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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SLC35F4 Gene

protein-coding   GIFtS: 37
GCID: GC14M058030

Solute Carrier Family 35, Member F4

(Previous name: chromosome 14 open reading frame 36)
(Previous symbol: C14orf36)
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Solute Carrier Family 35, Member F41 2
C14orf361 2 3
Chromosome 14 Open Reading Frame 361
c14_53732
Solute Carrier Family 35 Member F42

External Ids:    HGNC: 198451   Entrez Gene: 3418802   Ensembl: ENSG000001518127   UniProtKB: A4IF303   

Export aliases for SLC35F4 gene to outside databases

Previous GC identifers: GC14M056021 GC14M056022 GC14M057100 GC14M038196


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SLC35F4 Gene: 
SLC35F4 (solute carrier family 35, member F4) is a protein-coding gene. Diseases associated with SLC35F4 include bipolar disorder. An important paralog of this gene is SLC35F3.

UniProtKB/Swiss-Prot: S35F4_HUMAN, A4IF30
Function: Putative solute transporter (Potential)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NT_026437.12  NC_018925.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SLC35F4 gene promoter:
         HFH-3   HTF   GCNF   AP-4   FOXI1   POU2F1   GCNF-1   POU2F1a   c-Myb   GCNF-2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for SLC35F4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC35F4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q22.2   Ensembl cytogenetic band:  14q23.1   HGNC cytogenetic band: 14q22.3

SLC35F4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC35F4 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M058030:  view genomic region     (about GC identifiers)

Start:
58,030,640 bp from pter      End:
58,448,912 bp from pter
Size:
418,273 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: S35F4_HUMAN, A4IF30 (See protein sequence)
Recommended Name: Solute carrier family 35 member F4  
Size: 521 amino acids; 57809 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Secondary accessions: A6NDQ3
Alternative splicing: 2 isoforms:  A4IF30-1   A4IF30-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for SLC35F4: NX_A4IF30

Explore proteomics data for SLC35F4 at MOPED 

SLC35F4 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

SLC35F4 Protein Expression

REFSEQ proteins: NP_001193849.1  
ENSEMBL proteins: 
 ENSP00000452086   ENSP00000451990   ENSP00000450836   ENSP00000452196   ENSP00000342518  

Human Recombinant Protein Products for SLC35F4: 
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Cloud-Clone Corp. Proteins for SLC35F4 

Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016020membrane ----
GO:0016021integral to membrane IEA--

SLC35F4 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
SLC: Solute carriers

IUPHAR Guide to PHARMACOLOGY protein family classification: SLC35F4 
SLC35 family of nucleotide sugar transporters

1 InterPro protein domain:
 IPR026505 Solute_c_fam_35_mem_F3/F4

Graphical View of Domain Structure for InterPro Entry A4IF30

ProtoNet protein and cluster: A4IF30

UniProtKB/Swiss-Prot: S35F4_HUMAN, A4IF30
Similarity: Belongs to the SLC35F solute transporter family
Similarity: Contains 1 EamA domain


SLC35F4 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: S35F4_HUMAN, A4IF30
Function: Putative solute transporter (Potential)

Animal Models:

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In Situ Assay
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35F4


(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC35F4

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006810transport IEA--

SLC35F4 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
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Browse Tocris compounds for SLC35F4 (S35F4)

Search CenterWatch for drugs/clinical trials and news about SLC35F4 / S35F4

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for SLC35F4 gene (2 alternative transcripts): 
NM_001080455.1  NM_001206920.1  

Unigene Cluster for SLC35F4:

Solute carrier family 35, member F4
Hs.28280  [show with all ESTs]
Unigene Representative Sequence: BC101319
8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000556826(uc021rtp.1) ENST00000554729 ENST00000557254(uc010aoz.1)
ENST00000556306 ENST00000557430 ENST00000556568 ENST00000554648 ENST00000339762(uc010apa.1)

miRNA
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8/11 QIAGEN miScript miRNA Assays for microRNAs that regulate SLC35F4 (see all 11):
hsa-miR-30c hsa-miR-429 hsa-miR-27a hsa-miR-513a-5p hsa-miR-30d hsa-miR-200c hsa-miR-30a hsa-miR-30b
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:
     
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QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SLC35F4
Clone
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OriGene ORF clones in mouse, rat for SLC35F4
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Sirion Biotech Customized lentivirus for stable overexpression of SLC35F4 
                     Customized lentivirus expression plasmids for stable overexpression of SLC35F4 
Primer
Products:
    
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  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC35F4

Additional mRNA sequence: 

BC101318.1 BC101319.1 BC101320.1 BC101321.1 

3 DOTS entries:

DT.408488  DT.40124650  DT.120745265 

9 AceView cDNA sequences:

BX105912 Z41512 AA757343 Z45884 BG200028 AW298505 H16562 H15217 
H15157 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

SLC35F4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
SLC35F4 Expression
About this image


See SLC35F4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SLC35F4

SOURCE GeneReport for Unigene cluster: Hs.28280
    SABiosciences Custom PCR Arrays for SLC35F4
Primer
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QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC35F4
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35F4

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for SLC35F4 gene from 6/12 species (see all 12)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Slc35f41 , 5 solute carrier family 35, member F41, 5 89.88(n)1
95.45(a)1
  14 (25.52 cM)5
752881  NM_029238.21  NP_083514.11 
 492985195 
chicken
(Gallus gallus)
Aves SLC35F41 solute carrier family 35, member F4 81.34(n)
86.36(a)
  776258  XM_001235788.2  XP_001235789.2 
lizard
(Anolis carolinensis)
Reptilia SLC35F46
solute carrier family 35, member F4
80(a)
1 ↔ 1
GL343325.1(721355-770982)
zebrafish
(Danio rerio)
Actinopterygii LOC1005357371 solute carrier family 35 member F4-like 69.93(n)
77.45(a)
  100535737  XM_003200373.1  XP_003200421.1 
fruit fly
(Drosophila melanogaster)
Insecta CG423226
--
17(a)
1 → many
3R(16565836-16582361)
worm
(Caenorhabditis elegans)
Secernentea Y73B6BL.316
Protein Y73B6BL.31, isoform a
28(a)
1 → many
IV(6442287-6446552)


ENSEMBL Gene Tree for SLC35F4 (if available)
TreeFam Gene Tree for SLC35F4 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for SLC35F4 gene
SLC35F32  
1 SIMAP similar gene for SLC35F4 using alignment to 4 protein entries:     S35F4_HUMAN (see all proteins):
SLC35F3

SLC35F4 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/6781 SNPs in SLC35F4 are shown (see all 6781)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 14 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs719689931,2
C--38371496(+) TTTTC-/ATATAT
ATATATAT
ATATA
1 -- int10--------
rs557593611,2
C,F--58030173(+) CCAGAG/CAATTG 1 -- int16Minor allele frequency- C:0.20NA WA CSA EA 364
rs1441116661,2
--58030191(+) CAGAAG/TGTGCG 1 -- int10--------
rs572099441,2
C,F--58030234(+) AGTGAC/TGGCAA 1 -- int12Minor allele frequency- T:0.05WA 120
rs1908673711,2
--58030252(+) CAACTC/TTTTCA 1 -- int10--------
rs1443743311,2
--58030323(+) GATATG/TTGTGA 1 -- int10--------
rs2006555741,2
--58030448(+) ATGTT-/TAATAATA 1 -- cds10--------
rs355895391,2
C--58030449(+) TAATA-/AATA  
        
CATTT
1 -- int10--------
rs1476473121,2
C--58030450(+) GTTTA-/AATA  
        
ATACA
1 -- int10--------
rs1833318431,2
--58030502(+) CTTCGA/GCAGCT 1 -- int10--------

HapMap Linkage Disequilibrium report for SLC35F4 (58030640 - 58280640 bp, first 250kb of SLC35F4)

Structural Variations
     Database of Genomic Variants (DGV) 10/13 variations for SLC35F4 (see all 13):    About this table     
Variant IDTypeSubtypePubMed ID
esv2748728CNV Deletion23290073
esv2662506CNV Deletion23128226
nsv436182CNV Deletion17901297
esv2656934CNV Deletion23128226
esv2748729CNV Deletion23290073
esv2669570CNV Deletion23128226
nsv526016CNV Loss19592680
nsv517592CNV Loss19592680
nsv528158CNV Loss19592680
nsv515859CNV Loss19592680

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SeqTarget long-range PCR primers for resequencing SLC35F4
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
2 diseases for SLC35F4:    About MalaCards
bipolar disorder    


SLC35F4 for disorders           About GeneDecksing

Genetic Association Database (GAD): SLC35F4

Export disorders for SLC35F4 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for SLC35F4 gene, integrated from 9 sources (see all 13):
(articles sorted by number of sources associating them with SLC35F4)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Propensity score-based nonparametric test revealing ge netic variants underlying bipolar disorder. (PubMed id 21254220)1, 4 Jiang Y. and Zhang H. (2011)
  2. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. (PubMed id 17554300)1, 4  . (2007)
  3. A genome-wide meta-analysis identifies novel loci ass ociated with schizophrenia and bipolar disorder. (PubMed id 20889312)1 Wang K.S....Aragam N. (2010)
  4. Common genetic variation and the control of HIV-1 in humans. (PubMed id 20041166)4 Fellay J....Goldstein D.B. (2009)
  5. Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder. (PubMed id 18937294)4 Lasky-Su J....Faraone S.V. (2008)
  6. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PubMed id 17903296)4 Kiel D.P....Karasik D. (2007)
  7. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PubMed id 17903299)4 Kathiresan S....Cupples L.A. (2007)
  8. Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PubMed id 17903298)4 Meigs J.B....Dupuis J. (2007)
  9. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PubMed id 17903292)4 Hwang S.J....Fox C.S. (2007)
  10. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PubMed id 17903307)4 Wilk J.B....O'Connor G.T. (2007)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 341880 HGNC: 19845 AceView: SLC35F4 Ensembl:ENSG00000151812 euGenes: HUgn341880
ECgene: SLC35F4 H-InvDB: SLC35F4

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for SLC35F4 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for SLC35F4 gene:
Search GeneIP for patents involving SLC35F4

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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transforming growth factor, beta 1
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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