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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SLC35F3 Gene

protein-coding   GIFtS: 44
GCID: GC01P234040

Solute Carrier Family 35, Member F3

  Search for SLC35F3
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Solute Carrier Family 35, Member F31 2
Solute Carrier Family 35 Member F32

External Ids:    HGNC: 236161   Entrez Gene: 1486412   Ensembl: ENSG000001837807   UniProtKB: Q8IY503   

Export aliases for SLC35F3 gene to outside databases

Previous GC identifers: GC01P231124 GC01P230347 GC01P232107 GC01P204531


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SLC35F3 Gene: 
SLC35F3 (solute carrier family 35, member F3) is a protein-coding gene. An important paralog of this gene is SLC35F4.

UniProtKB/Swiss-Prot: S35F3_HUMAN, Q8IY50
Function: Putative solute transporter (Potential)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NT_167186.1  NC_018912.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SLC35F3 gene promoter:
         USF1   Pbx1a   ATF-2   CUTL1   C/EBPalpha   RORalpha1   Max   USF-1   c-Jun   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLC35F3 promoter sequence
   Search SABiosciences Chromatin IP Primers for SLC35F3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC35F3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q42.2   Ensembl cytogenetic band:  1q42.2   HGNC cytogenetic band: 1q42.3

SLC35F3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC35F3 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P234040:  view genomic region     (about GC identifiers)

Start:
234,040,679 bp from pter      End:
234,460,262 bp from pter
Size:
419,584 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: S35F3_HUMAN, Q8IY50 (See protein sequence)
Recommended Name: Solute carrier family 35 member F3  
Size: 421 amino acids; 46817 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Secondary accessions: Q5TDD6 Q8N9C9
Alternative splicing: 2 isoforms:  Q8IY50-1   Q8IY50-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for SLC35F3: NX_Q8IY50

Explore proteomics data for SLC35F3 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8IY50

  • SLC35F3 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SLC35F3 Protein Expression
    REFSEQ proteins: NP_775779.1  
    ENSEMBL proteins: 
     ENSP00000355577   ENSP00000355576  

    Human Recombinant Protein Products for SLC35F3: 
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    Novus Biologicals SLC35F3 Protein
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    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for SLC35F3 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016020membrane ----
    GO:0016021integral to membrane IEA--

    SLC35F3 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    SLC: Solute carriers

    IUPHAR Guide to PHARMACOLOGY protein family classification: SLC35F3 
    SLC35 family of nucleotide sugar transporters

    2 InterPro protein domains:
     IPR026505 Solute_c_fam_35_mem_F3/F4
     IPR000620 DMT

    Graphical View of Domain Structure for InterPro Entry Q8IY50

    ProtoNet protein and cluster: Q8IY50

    1 Blocks protein domain: IPB000620 Protein of unknown function DUF6

    UniProtKB/Swiss-Prot: S35F3_HUMAN, Q8IY50
    Similarity: Belongs to the SLC35F solute transporter family


    SLC35F3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: S35F3_HUMAN, Q8IY50
    Function: Putative solute transporter (Potential)

    Animal Models:

       inGenious Targeting Laboratory - Custom generated mouse model solutions for SLC35F3 
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    SwitchGear 3'UTR luciferase reporter plasmidSLC35F3 3' UTR sequence
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35F3


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC35F3

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006810transport IEA--

    SLC35F3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SLC35F3 (S35F3)

    Search CenterWatch for drugs/clinical trials and news about SLC35F3 / S35F3

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SLC35F3 gene: 
    NM_173508.2  

    Unigene Cluster for SLC35F3:

    Solute carrier family 35, member F3
    Hs.158748  [show with all ESTs]
    Unigene Representative Sequence: AK095031
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000366618(uc001hvy.1) ENST00000366617(uc001hwa.1)
    miRNA
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    8/13 QIAGEN miScript miRNA Assays for microRNAs that regulate SLC35F3 (see all 13):
    hsa-miR-411* hsa-miR-379* hsa-miR-27a hsa-miR-767-5p hsa-miR-128 hsa-let-7a-2* hsa-miR-3681* hsa-miR-659
    SwitchGear 3'UTR luciferase reporter plasmidSLC35F3 3' UTR sequence
    Inhib. RNA
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC35F3

    Additional mRNA sequence: 

    AK054726.1 AK095031.1 BC037878.1 

    4 DOTS entries:

    DT.100021874  DT.314256  DT.95147181  DT.97765766 

    24/63 AceView cDNA sequences (see all 63):

    Z41377 AI656220 AI203071 BQ786942 F04514 AI457528 BE348802 AI916559 
    BE466751 BF433659 AA995374 AW572445 AA888880 F08376 BX117127 BI962922 
    AA782845 BE503076 BE503875 BE504488 NM_173508 AK095031 Z45616 AI214558 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SLC35F3 expression in normal human tissues (normalized intensities)      SLC35F3 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    SLC35F3 Expression
    About this image


    SLC35F3 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/8 selected tissues (see all 8) fully expand
     
     Endothelium (Cardiovascular System)    fully expand to see all 2 entries
             Human corneal endothelial cells
             Human Villous Capillary Endothelial Cells (HVCEC)   
     
     Eye (Sensory Organs)    fully expand to see all 2 entries
             Mature Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
             Human corneal endothelial cells
     
     Intestine
             Human Villous Capillary Endothelial Cells (HVCEC)   
     
     Breast (Uncategorized)
             Human Mammary Epithelial Cells (HMEpiC)   
     
     Primitive Streak (Early Embryonic Tissues)
             Mesendoderm-like cells ( Generation of mesendoderm and definitive endoderm cells...

    See SLC35F3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SLC35F3

    SOURCE GeneReport for Unigene cluster: Hs.158748
        SABiosciences Custom PCR Arrays for SLC35F3
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35F3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for SLC35F3 gene from 6/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Slc35f31 , 5 solute carrier family 35, member F31, 5 86.75(n)1
    91.39(a)1
      8 (73.82 cM)5
    2100271  NM_175434.31  NP_780643.21 
     1262985585 
    chicken
    (Gallus gallus)
    Aves SLC35F31 solute carrier family 35, member F3 80.78(n)
    87.12(a)
      421518  XM_419560.3  XP_419560.2 
    lizard
    (Anolis carolinensis)
    Reptilia SLC35F36
    Uncharacterized protein
    80(a)
    1 ↔ 1
    1(220156091-220359562)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1003325371 novel protein similar to H.sapiens SLC35F3, solute more 69.73(n)
    71.43(a)
      100332537  XM_002664211.1  XP_002664257.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG423226
    --
    17(a)
    1 → many
    3R(16565836-16582361)
    worm
    (Caenorhabditis elegans)
    Secernentea Y73B6BL.311 Protein Y73B6BL.31 49.39(n)
    37.54(a)
      177408  NM_001028397.2  NP_001023568.1 


    ENSEMBL Gene Tree for SLC35F3 (if available)
    TreeFam Gene Tree for SLC35F3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SLC35F3 gene
    SLC35F42  
    1 SIMAP similar gene for SLC35F3 using alignment to 1 protein entry:     S35F3_HUMAN:
    SLC35F4

    SLC35F3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/9007 SNPs in SLC35F3 are shown (see all 9007)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1912561301,2
    --234038826(+) GTCTGC/TTCTTT 1 -- us2k10--------
    rs744151981,2
    C,F--234038926(+) ATATTG/CTGTTG 1 -- us2k11Minor allele frequency- C:0.15EA 120
    rs727517741,2
    C,F--234039000(+) AACCTC/TCTGGG 1 -- us2k11Minor allele frequency- T:0.03NA 120
    rs790784541,2
    F--234039086(+) ATCCAT/CGAACA 1 -- us2k11Minor allele frequency- C:0.06WA 118
    rs1831650481,2
    --234039490(+) TATGAA/TGCTGA 1 -- us2k10--------
    rs1879037411,2
    --234039582(+) TGTTAA/GCTGTA 1 -- us2k10--------
    rs717192681,2
    C--234039669(+) AATAT-/AAAAAA 1 -- us2k11Minor allele frequency- A:0.50CSA 2
    rs1149197751,2
    C,F--234039674(+) AAAAAA/GAGCAG 1 -- us2k11Minor allele frequency- G:0.03WA 118
    rs1384056481,2
    C--234039788(+) TTTTT-/GGCTGG 1 -- us2k10--------
    rs109103081,2
    C,F,A,H--234039857(+) AATAAT/CATTAG 1 -- us2k120Minor allele frequency- C:0.45NS EA NA WA CSA 2344

    HapMap Linkage Disequilibrium report for SLC35F3 (234040679 - 234290679 bp, first 250kb of SLC35F3)

    Structural Variations
         Database of Genomic Variants (DGV) 10/36 variations for SLC35F3 (see all 36):    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2725196CNV Deletion23290073
    esv2666716CNV Deletion23128226
    esv2656563CNV Deletion23128226
    esv2725185CNV Deletion23290073
    dgv68e201CNV Deletion23290073
    esv2725141CNV Deletion23290073
    esv2659243CNV Deletion23128226
    esv4582CNV Deletion18987735
    esv2725129CNV Deletion23290073
    esv2725118CNV Deletion23290073

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing SLC35F3
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    SLC35F3 for disorders           About MalaCards

    SLC35F3 for disorders           About GeneDecksing

    Genetic Association Database (GAD): SLC35F3
    Human Genome Epidemiology (HuGE) Navigator: SLC35F3 (4 documents)

    Export disorders for SLC35F3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SLC35F3 gene, integrated from 9 sources (see all 14):
    (articles sorted by number of sources associating them with SLC35F3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (2010)
    2. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (2010)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    5. Global identification of modular cullin-RING ligase su bstrates. (PubMed id 21963094)1 Emanuele M.J....Elledge S.J. (2011)
    6. Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)
    7. Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study. (PubMed id 17903306)4 Newton-Cheh C....Larson M.G. (2007)
    8. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PubMed id 17903300)4 Fox C.S....Atwood L.D. (2007)
    9. Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study. (PubMed id 17903295)4 Lunetta K.L....Murabito J.M. (2007)
    10. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PubMed id 17903292)4 Hwang S.J....Fox C.S. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 148641 HGNC: 23616 AceView: SLC35F3 Ensembl:ENSG00000183780 euGenes: HUgn148641
    ECgene: SLC35F3 H-InvDB: SLC35F3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SLC35F3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SLC35F3 gene:
    Search GeneIP for patents involving SLC35F3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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