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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

SLC35F1 Gene

protein-coding GIFtS: 41
GCID: GC06P118274

solute carrier family 35, member F1

(Previous name: chromosome 6 open reading frame 169 )
(Previous symbol: C6orf169)

Explore 1 disease affiliated with
SLC35F1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Solute Carrier Family 35, Member F1¹ ²
C6orf169¹ ² ³
DJ230I3.1¹
Chromosome 6 Open Reading Frame 169¹
Solute Carrier Family 35 Member F1²

External Ids:	HGNC: 21483¹	Entrez Gene: 222553²	Ensembl: ENSG00000196376⁷	UniProtKB: Q5T1Q4³

Export aliases for SLC35F1 gene to outside databases

Previous GC identifers: GC06P118335 GC06P115810

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: S35F1_HUMAN, Q5T1Q4

Function: Putative solute transporter (Potential)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000006.11 NC_018917.1 NT_025741.15

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the SLC35F1 gene promoter:
AhR AML1a Lmo2 MIF-1 CUTL1 Arnt MEF-2A aMEF-2 Pax-4a Ik-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: SLC35F1 promoter sequence

Search SABiosciences Chromatin IP Primers for SLC35F1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC35F1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q22.31 Ensembl cytogenetic band: 6q22.1 HGNC cytogenetic band: 6q22.31

SLC35F1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC35F1 gene location

GeneLoc information about chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06P118274: view genomic region (about GC identifiers)

Start:	118,228,689 bp from pter	End:	118,638,839 bp from pter
Size:	410,151 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: S35F1_HUMAN, Q5T1Q4 (See protein sequence)

Recommended Name: Solute carrier family 35 member F1

Size: 408 amino acids; 45346 Da

Subcellular location: Membrane; Multi-pass membrane protein (Potential)

Sequence caution: Sequence=AAH36493.1; Type=Frameshift; Positions=53, 242;

Secondary accessions: E1P564 Q1RMG1 Q4G0U9 Q4G167 Q6N007

Explore the universe of human proteins at neXtProt for SLC35F1: NX_Q5T1Q4

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q5T1Q4

SLC35F1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_001025029.2

ENSEMBL proteins:

ENSP00000353557

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	Uscn Proteins for SLC35F1

Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0016021	integral to membrane	IEA	--

SLC35F1 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

SLC35F1 for domains About GeneDecksing

1 InterPro domain/family:

IPR009262 DUF914_euk

Graphical View of Domain Structure for InterPro Entry Q5T1Q4

ProtoNet protein and cluster: Q5T1Q4

UniProtKB/Swiss-Prot: S35F1_HUMAN, Q5T1Q4

Similarity: Belongs to the SLC35F solute transporter family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: S35F1_HUMAN, Q5T1Q4

Function: Putative solute transporter (Potential)

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In Situ Assay
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for SLC35F1

Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006810	transport	IEA	--

SLC35F1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for SLC35F1
Search CenterWatch for drugs/clinical trials and news about SLC35F1 / S35F1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for SLC35F1 gene:

NM_001029858.3

Unigene Cluster for SLC35F1:

Solute carrier family 35, member F1

Hs.654841 [show with all ESTs]

Unigene Representative Sequence: BC028615

1 Ensembl transcript including schematic representation, and UCSC links where relevant:

ENST00000360388(uc003pxx.4)

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Additional cDNA sequence:

AK092207.1 AK128717.1 AK295860.1 BC028615.1 BC036493.1 BC114925.1 BX640761.1

2 DOTS entries:

DT.95207073 DT.121359255

24/59 AceView cDNA sequences (see all 59):

AA205168 BM666126 T08276 BI914209 AW021457 BX640761 BX505241 AK092207

Z41073 BI492413 AA405212 BX282218 BI497187 AI287666 AW021175 BI520083

Z45359 BF970162 BI497151 BI492121 AW021315 AW023009 CB409175 BM711038

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

SLC35F1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CTCCCCTATG

About this image

SLC35F1 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Epiblast-like cells (Reconstitution of mo...)

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See SLC35F1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SLC35F1

SOURCE GeneReport for Unigene cluster: Hs.654841

SABiosciences Custom PCR Arrays for SLC35F1

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for SLC35F1 gene from 8/22 species (see all 22) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Slc35f1^{1 , 5}	solute carrier family 35, member F1^{1, 5}	90.58(n)¹ 97.3(a)¹		10 (26.79 cM)⁵ 215085¹ NM_178675.4¹ NP_848790.2¹ 52690533⁵
chicken (Gallus gallus)	Aves	SLC35F1¹	solute carrier family 35, member F1	81.65(n) 89.93(a)		770279 XM_001233613.2 XP_001233614.1
lizard (Anolis carolinensis)	Reptilia	SLC35F1⁶	--	90(a)	1 ↔ 1	1(185127869-185191605)
zebrafish (Danio rerio)	Actinopterygii	slc35f1¹	solute carrier family 35, member F1	74.98(n) 83.57(a)		555352 XM_677843.4 XP_682935.4
honey bee (Apis mellifera)	Insecta	--	--	28(a)	1 → many	Group2.7(563143-566537)
worm (Caenorhabditis elegans)	Secernentea	Y73E7A.3¹	Protein Y73E7A.3	52.1(n) 48.01(a)		190665 NM_058466.3 NP_490867.3
thale cress (Arabidopsis thaliana)	eudicotyledons	AT3G59310¹	hypothetical protein	51.07(n) 41.69(a)		825100 NM_115793.4 NP_191490.2
rice (Oryza sativa)	Liliopsida	Os08g0540000¹	hypothetical protein	50.99(n) 44.74(a)		4346184 NM_001068915.1 NP_001062380.1

ENSEMBL Gene Tree for SLC35F1 (if available)
TreeFam Gene Tree for SLC35F1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for SLC35F1 gene

SLC35F2²

1 SIMAP similar gene for SLC35F1 using alignment to 1 protein entry: S35F1_HUMAN:

SLC35F2

SLC35F1 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 6 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs183575427^1,2		--	118226719(+)	`GGAGGC/TAAGCC`	1	--	us2k¹		0	--	--	--	--
rs117804733^1,2	F,	--	118226981(+)	`CAAATC/GTGAGG`	1	--	us2k¹		1		NA	120
rs144842255^1,2		--	118227030(+)	`AGGACA/GACATT`	1	--	us2k¹		0	--	--	--	--
rs147920408^1,2		--	118227093(+)	`ACCTCA/GGGGAT`	1	--	us2k¹		0	--	--	--	--
rs186743589^1,2		--	118227198(+)	`GACTCC/TGAATT`	1	--	us2k¹		0	--	--	--	--
rs201638938^1,2		--	118227254(+)	`TTATT-/TATA TCCTT`	1	--	us2k¹		0	--	--	--	--
rs151255009^1,2	C,	--	118227255(+)	`TATTT-/ATATC CTTCC`	1	--	us2k¹		0	--	--	--	--
rs12523756^1,2	C,F,H,	--	118227450(+)	`AACTTA/CCTCAA`	1	--	us2k¹		1		EA	120
rs142073757^1,2		--	118227477(+)	`GAAGAA/GTTTTT`	1	--	us2k¹		0	--	--	--	--
rs112243759^1,2		--	118227582(+)	`TAATTG/CGGATC`	1	--	us2k¹		1		CSA	2

HapMap Linkage Disequilibrium report for SLC35F1 (118228689 - 118478689 bp, first 250kb of SLC35F1)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for SLC35F1: --

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

SLC35F1 for disorders About GeneDecksing

1 disease for SLC35F1: About MalaCards

osteoporosis

Human Genome Epidemiology (HuGE) Navigator: SLC35F1 (4 documents)

Export disorders for SLC35F1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for SLC35F1 gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with SLC35F1)

Utopia: connect your pdf to the dynamic
world of online information

Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)¹ Rose J.E....Uhl G.R. (2010)
Genome-wide association analysis identifies multiple loci related to resting heart rate. (PubMed id 20639392)¹ Eijgelsheim M....O'Donnell C.J. (2010)
Genome-wide pleiotropy of osteoporosis-related phenot ypes: The Framingham study. (PubMed id 20200953)¹ Karasik D....Demissie S. (2010)
Common variants in 22 loci are associated with QRS du ration and cardiac ventricular conduction. (PubMed id 21076409)¹ Sotoodehnia N....Arking D.E. (2010)
Common genetic variation near the phospholamban gene is associated with cardiac repolarisation: meta-analysis of three genome-wide a ssociation studies. (PubMed id 19587794)¹ Nolte I.M....Jamshidi Y. (2009)
Genetic variants associated with cardiac structure an d function: a meta-analysis and replication of genome-wide association data. (PubMed id 19584346)¹ Vasan R.S....Blankenberg S. (2009)
Common variants at ten loci influence QT interval duration in the QTGEN Study. (PubMed id 19305408)¹ Newton-Cheh C....Stricker B.H. (2009)
The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)² Bechtel S.... Schupp I. (2007)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)² Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)¹ Ota T.... Sugano S. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 222553	HGNC: 21483	AceView: SLC35F1	Ensembl:ENSG00000196376	euGenes: HUgn222553
ECgene: SLC35F1	H-InvDB: SLC35F1

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for SLC35F1	Pharmacogenomics, SNPs, Pathways

Intellectual Property for SLC35F1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for SLC35F1 gene:
Search GeneIP for patents involving SLC35F1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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	OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SLC35F1		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SLC35F1
	Browse OriGene Protein Over-expression Lysates		Browse OriGene Fluorogenic Cell Assay Kits
	OriGene siRNA for SLC35F1		OriGene 3'-UTR Clone for SLC35F1
	OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SLC35F1		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SLC35F1
	Browse OriGene GFP tagged cDNA clones in CMV expression vector		Browse OriGene MicroRNA Expression Plasmids
	Browse OriGene basic RS shRNAs		Browse OriGene validated miRNA SYBR primer pairs
	Browse OriGene full length recombinant human proteins expressed in human HEK293 cells		OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
	OriGene Custom Antibody Services for SLC35F1		OriGene Custom Protein Services for SLC35F1
	OriGene Custom Immunoassay Development

	QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SLC35F1
	QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SLC35F1
	QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC35F1
	QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SLC35F1
	QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC35F1
	QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC35F1

	GenScript Custom Purified and Recombinant Proteins Services for SLC35F1		GenScript cDNA clones with any tag delivered in your preferred vector for SLC35F1
	GenScript Custom Assay Services for SLC35F1		GenScript Custom Superior Antibodies Services for SLC35F1
	GenScript Custom overexpressing Cell Line Services for SLC35F1		CloneReady with Over 120,000 Genes
	Gene Synthesis: Any Gene in Any Vector		Vector-based siRNA and miRNA, Ready for Transfection
	Gene Mutant Library, Variants up to 10^11		Plasmid Preparation
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SLC35F1

GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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SLC35F1 Gene

solute carrier family 35, member F1

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SLC35F1 Gene

solute carrier family 35, member F1

Aliasesfor SLC35F1 gene

Summariesfor SLC35F1 gene

Genomic Viewsfor SLC35F1 gene

Proteinsfor SLC35F1 gene

Protein Domains /Familiesfor SLC35F1 gene

Functionfor SLC35F1 gene

Pathways & Interactionsfor SLC35F1 gene

Drugs & Compoundsfor SLC35F1 gene

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Expression for SLC35F1 gene

Orthologsfor SLC35F1 gene

Paralogsfor SLC35F1 gene

Genomic Variantsfor SLC35F1 gene

Disorders / Diseasesfor SLC35F1 gene

Publicationsfor SLC35F1 gene

External Searches for SLC35F1 gene

Genome Databases showing SLC35F1 gene

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Specialized Databases showing SLC35F1 gene

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Aliases
for SLC35F1 gene

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for SLC35F1 gene

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for SLC35F1 gene

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for SLC35F1 gene

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for SLC35F1 gene

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for SLC35F1 gene

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Expression
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Orthologs
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