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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SLC35E4 Gene

protein-coding   GIFtS: 39
GCID: GC22P031031

Solute Carrier Family 35, Member E4

  Search for SLC35E4
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Solute Carrier Family 35, Member E41 2
Solute Carrier Family 35 Member E42

External Ids:    HGNC: 170581   Entrez Gene: 3396652   Ensembl: ENSG000001000367   UniProtKB: Q6ICL73   

Export aliases for SLC35E4 gene to outside databases

Previous GC identifers: GC22P029357 GC22P029347 GC22P029358 GC22P013994


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SLC35E4 Gene: 
SLC35E4 (solute carrier family 35, member E4) is a protein-coding gene.

UniProtKB/Swiss-Prot: S35E4_HUMAN, Q6ICL7
Function: Putative transporter (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000022.10  NC_018933.2  NT_011520.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SLC35E4 gene promoter:
         Tal-1   AML1a   SREBP-1c   LCR-F1   SREBP-1b   E47   CREB   SREBP-1a   TFIID   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLC35E4 promoter sequence
   Search SABiosciences Chromatin IP Primers for SLC35E4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC35E4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q12.2   Ensembl cytogenetic band:  22q12.2   HGNC cytogenetic band: 22q12.2

SLC35E4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC35E4 gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22P031031:  view genomic region     (about GC identifiers)

Start:
31,031,639 bp from pter      End:
31,065,003 bp from pter
Size:
33,365 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: S35E4_HUMAN, Q6ICL7 (See protein sequence)
Recommended Name: Solute carrier family 35 member E4  
Size: 350 amino acids; 36747 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Secondary accessions: Q567P0
Alternative splicing: 2 isoforms:  Q6ICL7-1   Q6ICL7-2   

Explore the universe of human proteins at neXtProt for SLC35E4: NX_Q6ICL7

Explore proteomics data for SLC35E4 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q6ICL7

  • SLC35E4 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SLC35E4 Protein Expression
    REFSEQ proteins: NP_001001479.1  
    ENSEMBL proteins: 
     ENSP00000339626   ENSP00000384377   ENSP00000413552   ENSP00000300385  

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    Cloud-Clone Corp. Proteins for SLC35E4 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016020membrane ----
    GO:0016021integral to membrane IEA--

    SLC35E4 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    SLC: Solute carriers

    IUPHAR Guide to PHARMACOLOGY protein family classification: SLC35E4 
    SLC35 family of nucleotide sugar transporters

    2 InterPro protein domains:
     IPR004853 DUF250
     IPR000620 DMT

    Graphical View of Domain Structure for InterPro Entry Q6ICL7

    ProtoNet protein and cluster: Q6ICL7

    UniProtKB/Swiss-Prot: S35E4_HUMAN, Q6ICL7
    Similarity: Belongs to the TPT transporter family. SLC35E subfamily
    Similarity: Contains 1 EamA domain


    SLC35E4 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: S35E4_HUMAN, Q6ICL7
    Function: Putative transporter (By similarity)

    Animal Models:

       inGenious Targeting Laboratory - Custom generated mouse model solutions for SLC35E4 
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    SwitchGear 3'UTR luciferase reporter plasmidSLC35E4 3' UTR sequence
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35E4


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC35E4

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for SLC35E4 (ENSP000003396264) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0055085transmembrane transport ----

    SLC35E4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SLC35E4 (S35E4)

    Search CenterWatch for drugs/clinical trials and news about SLC35E4 / S35E4

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SLC35E4 gene: 
    NM_001001479.2  

    Unigene Cluster for SLC35E4:

    Solute carrier family 35, member E4
    Hs.660384  [show with all ESTs]
    Unigene Representative Sequence: BC040191
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000343605(uc003ais.1) ENST00000406566 ENST00000451479(uc003ait.3)
    ENST00000300385
    miRNA
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    hsa-miR-1271 hsa-miR-520a-5p hsa-miR-1304 hsa-miR-3116 hsa-miR-199b-5p hsa-miR-3915 hsa-miR-96 hsa-miR-22
    SwitchGear 3'UTR luciferase reporter plasmidSLC35E4 3' UTR sequence
    Inhib. RNA
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC35E4
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC35E4

    Additional mRNA sequence: 

    BC031973.1 BC040191.1 BC063569.1 BC093099.1 BC107119.2 CR456351.1 

    6 DOTS entries:

    DT.100771472  DT.109710  DT.97837467  DT.99951401  DT.95084062  DT.95373433 

    24/42 AceView cDNA sequences (see all 42):

    CR614052 BG699772 AA643008 NM_001001479 BC040191 CA425705 CR456351 BF035708 
    BQ956283 BC063569 BM559764 BX281594 AA010644 BX326836 F27442 BX389051 
    BI825246 BX403294 BX369073 BV196162 BM479343 BU500423 BC031973 BI830603 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SLC35E4 expression in normal human tissues (normalized intensities)      SLC35E4 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAGGGAGGG
    SLC35E4 Expression
    About this image


    SLC35E4 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/6 selected tissues (see all 6) fully expand
     
     Brain (Nervous System)    fully expand to see all 4 entries
             Cerebral Cortex
             brain/forebrain/telencephalon   
     
     Neural Tube (Nervous System)
             Telencephalon
     
     Testis (Reproductive System)
     
     Epidermis (Integumentary System)
     
     Spinal Cord (Nervous System)

    See SLC35E4 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SLC35E4

    SOURCE GeneReport for Unigene cluster: Hs.660384
        SABiosciences Custom PCR Arrays for SLC35E4
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35E4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for SLC35E4 gene from 5/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Slc35e41 , 5 solute carrier family 35, member E41, 5 82.86(n)1
    83.71(a)1
      11 (2.75 cM)5
    1037101  NM_153142.31  NP_694782.11 
     39070215 
    chicken
    (Gallus gallus)
    Aves SLC35E46
    solute carrier family 35, member E4
    62(a)
    1 ↔ 1
    15(10779334-10779759)
    lizard
    (Anolis carolinensis)
    Reptilia SLC35E46
    Uncharacterized protein
    54(a)
    1 ↔ 1
    GL343417.1(189952-193345)
    zebrafish
    (Danio rerio)
    Actinopterygii slc35e41 solute carrier family 35, member E4 61.62(n)
    55.89(a)
      550555  NM_001017857.1  NP_001017857.1 
    rice
    (Oryza sativa)
    Liliopsida Os05g01219001 hypothetical protein 46.14(n)
    33.77(a)
      4337657  NM_001061037.1  NP_001054502.1 


    ENSEMBL Gene Tree for SLC35E4 (if available)
    TreeFam Gene Tree for SLC35E4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/353 SNPs in SLC35E4 are shown (see all 353)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 22 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1897463571,2
    --31029809(+) AGCCAC/GTGTAC 1 -- us2k10--------
    rs121581651,2
    C--31029887(+) gtttaC/Tgcctg 1 -- us2k10--------
    rs57532581,2
    C,F--31029898(+) TAATCC/TCAGCA 1 -- us2k16Minor allele frequency- T:0.25NA CSA 12
    rs57491471,2
    C,F,A,H--31030018(+) ggtggT/Cgcacg 1 -- us2k16Minor allele frequency- C:0.18NA CSA 11
    rs1818462461,2
    --31030077(+) CCTGGC/GAGGCA 1 -- us2k10--------
    rs1445969391,2
    C--31030078(+) CTGGGA/GGGCAG 1 -- us2k10--------
    rs96210521,2
    C--31030104(+) gagatC/Tgtgcc 1 -- us2k10--------
    rs1124570621,2
    C,F--31030138(+) AGAGCG/AAAACT 1 -- us2k11Minor allele frequency- A:0.50CSA 2
    rs412799651,2
    F--31030173(+) AAAAAC/ACTGAC 1 -- us2k11Minor allele frequency- A:0.01NA 120
    rs57491481,2
    C,F,A,H--31030213(+) GGGTCC/TCAGAT 1 -- us2k116Minor allele frequency- T:0.31NS EA NA WA 930

    HapMap Linkage Disequilibrium report for SLC35E4 (31031639 - 31065003 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for SLC35E4:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2675394CNV Deletion23128226
    nsv829171CNV Loss20364138
    nsv829172CNV Gain20364138
    nsv834175CNV Gain17160897

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SLC35E4 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with SLC35E4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802)1, 2 Collins J.E.... Dunham I. (2004)
    2. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 339665 HGNC: 17058 AceView: SLC35E4 Ensembl:ENSG00000100036 euGenes: HUgn339665
    ECgene: SLC35E4 H-InvDB: SLC35E4

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SLC35E4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SLC35E4 gene:
    Search GeneIP for patents involving SLC35E4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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