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SLC35E2 Gene

protein-coding   GIFtS: 40
GCID: GC01M001654

Solute Carrier Family 35, Member E2

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Solute Carrier Family 35, Member E21 2
Solute Carrier Family 35 Member E22

External Ids:    HGNC: 208631   Entrez Gene: 99062   Ensembl: ENSG000002157907   UniProtKB: P0CK973   

Export aliases for SLC35E2 gene to outside databases

Previous GC identifers: GC01M9N0168 GC01M001695 GC01M001584 GC01M001587 GC01M001646 GC01M000939


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SLC35E2 Gene:
SLC35E2 (solute carrier family 35, member E2) is a protein-coding gene. An important paralog of this gene is SLC35E2B.

UniProtKB/Swiss-Prot: S35E2_HUMAN, P0CK97
Function: Putative transporter (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the SLC35E2 gene promoter:
         CREB   deltaCREB   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLC35E2 promoter sequence
   Search Chromatin IP Primers for SLC35E2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SLC35E2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36.33   Ensembl cytogenetic band:  1p36.33   HGNC cytogenetic band: 1p36.33

SLC35E2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC35E2 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M001654:  view genomic region     (about GC identifiers)

Start:
1,656,277 bp from pter      End:
1,677,438 bp from pter
Size:
21,162 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: S35E2_HUMAN, P0CK97 (See protein sequence)
Recommended Name: Solute carrier family 35 member E2  
Size: 266 amino acids; 29079 Da
Secondary accessions: B3KWR0 O75035 Q2TAY8 Q569F8 Q5CZA4 Q5QPR8 Q9Y3J8
Alternative splicing: 2 isoforms:  P0CK97-1   P0CK97-2   

Explore the universe of human proteins at neXtProt for SLC35E2: NX_P0CK97

Explore proteomics data for SLC35E2 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys133
  • Modification sites at PhosphoSitePlus

  • See SLC35E2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001186716.1  NP_878258.1  

    ENSEMBL proteins: 
     ENSP00000347614   ENSP00000246421   ENSP00000383714  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    SLC: Solute carriers

    IUPHAR Guide to PHARMACOLOGY protein family classification: SLC35E2
    SLC35 family of nucleotide sugar transporters

    1 InterPro protein domain:
     IPR000620 DMT

    Graphical View of Domain Structure for InterPro Entry P0CK97

    ProtoNet protein and cluster: P0CK97

    UniProtKB/Swiss-Prot: S35E2_HUMAN, P0CK97
    Similarity: Belongs to the TPT transporter family. SLC35E subfamily


    Find genes that share domains with SLC35E2           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: S35E2_HUMAN, P0CK97
    Function: Putative transporter (By similarity)

    Animal Models:

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    Selected qRT-PCR Assays for microRNAs that regulate SLC35E2 (see all 18):
    hsa-miR-498 hsa-miR-429 hsa-miR-520d-5p hsa-miR-137 hsa-miR-340 hsa-miR-373* hsa-miR-1297 hsa-miR-155
    SwitchGear 3'UTR luciferase reporter plasmidSLC35E2 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    S35E2_HUMAN, P0CK97: Membrane; Multi-pass membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane3

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016020membrane ----
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with SLC35E2           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SLC35E2
    Interactions:

        Search GeneGlobe Interaction Network for SLC35E2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 9)

    Selected Interacting proteins for SLC35E2 (ENSP000002464214) via UniProtKB, MINT, STRING, and/or I2D (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    RAB19ENSP000002758744STRING: ENSP00000275874
    RAB1AENSP000003872864STRING: ENSP00000387286
    RAB1BENSP000003102264STRING: ENSP00000310226
    RAB33AENSP000002570174STRING: ENSP00000257017
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SLC35E2 (S35E2)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SLC35E2 gene (2 alternative transcripts): 
    NM_001199787.1  NM_182838.2  

    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000355439(uc001ahy.3) ENST00000246421(uc001aia.2) ENST00000475229
    ENST00000400924
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate SLC35E2 (see all 18):
    hsa-miR-498 hsa-miR-429 hsa-miR-520d-5p hsa-miR-137 hsa-miR-340 hsa-miR-373* hsa-miR-1297 hsa-miR-155
    SwitchGear 3'UTR luciferase reporter plasmidSLC35E2 3' UTR sequence
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat SLC35E2

    Selected AceView cDNA sequences (see all 499):

    BI753229 AI066775 CB161273 CR600892 AA706409 BF868528 CR612504 CB159795 
    AI262667 BU732836 F02917 C02016 AW072757 AI374934 AA761922 BM661926 
    NM_182838 AA693335 AI263381 CK429285 AW662168 BM510601 BE047587 BM761686 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SLC35E2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    SLC35E2 Expression
    About this image

    SLC35E2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SLC35E2 Protein Expression
        Custom PCR Arrays for SLC35E2
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35E2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for SLC35E2 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chimpanzee
    (Pan troglodytes)
    Mammalia SLC35E21 solute carrier family 35, member E2 99.32(n)
    99.59(a)
      457206  XM_003949273.1  XP_003949322.1 
    lizard
    (Anolis carolinensis)
    Reptilia SLC35E26
    solute carrier family 35, member E2
    78(a)
    1 ↔ 1
    AAWZ02040307(248-4555)
    African clawed frog
    (Xenopus laevis)
    Amphibia BC056135.12   -- 72.66(n)    BC056135.1 
    zebrafish
    (Danio rerio)
    Actinopterygii CK025158.12   -- 77.46(n)    CK025158.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG146216
    --
    10(a)
    1 → many
    X(21846590-21849017)


    ENSEMBL Gene Tree for SLC35E2 (if available)
    TreeFam Gene Tree for SLC35E2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for SLC35E2 gene
    SLC35E2B2  SLC35E12  
    1 SIMAP similar gene for SLC35E2 using alignment to 1 protein entry:     S35E2_HUMAN:
    SLC35E2B

    Find genes that share paralogs with SLC35E2           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SLC35E2 (see all 529)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1840596781,2
    --1657826(+) GCCACC/TATGCC 1 -- int10--------
    rs1491603981,2
    C--1657884(+) GCCAGG/TATGGT 1 -- int10--------
    rs755738151,2
    C--1657898(+) GATCTC/TGTGAC 1 -- int10--------
    rs1817468431,2
    --1658082(+) CTCAGC/GCTCCC 1 -- int10--------
    rs120590771,2
    C,F--1658088(+) ctcccG/Aagtag 1 -- int13Minor allele frequency- A:0.33NA CSA 6
    rs1871952401,2
    --1658093(+) GAGTAC/GCTGGG 1 -- int10--------
    rs1903670161,2
    --1658108(+) CAGGCA/GCCCAC 1 -- int10--------
    rs1825570291,2
    C--1658119(+) CACTAC/TGCCCG 1 -- int10--------
    rs1388102091,2
    C--1658126(+) CCCGGC/GTAATT 1 -- int10--------
    rs121431731,2
    C--1658130(+) gctaaA/Tttttt 1 -- int10--------

    HapMap Linkage Disequilibrium report for SLC35E2 (1656277 - 1677438 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for SLC35E2 (see all 29):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2748696CNV Deletion23290073
    nsv436343CNV Deletion17901297
    nsv482957CNV Loss15286789
    dgv51n71CNV Loss21882294
    nsv822809CNV Loss20364138
    nsv871954CNV Loss21882294
    nsv871560CNV Loss21882294
    dgv10n71CNV Loss21882294
    dgv34n71CNV Loss21882294
    dgv20n71CNV Loss21882294

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SLC35E2 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with SLC35E2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (EMBO J. 2009)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (Nature 2006)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    6. Characterization of cDNA clones in size-fractionated cDNA libraries from human brain. (PubMed id 9455484)1 Seki N.... Ohara O. (DNA Res. 1997)
    7. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 9906 HGNC: 20863 AceView: CDC2L1andSLC35E2 Ensembl:ENSG00000215790 euGenes: HUgn9906
    ECgene: SLC35E2 H-InvDB: SLC35E2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for SLC35E2 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for SLC35E2 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SLC35E2 gene:
    Search GeneIP for patents involving SLC35E2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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