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Aliases for SLC35E1 Gene

Aliases for SLC35E1 Gene

  • Solute Carrier Family 35 Member E1 2 3 5
  • Solute Carrier Family 35, Member E1 2

External Ids for SLC35E1 Gene

Previous GeneCards Identifiers for SLC35E1 Gene

  • GC19M016507
  • GC19M016523
  • GC19M016522
  • GC19M016660
  • GC19M016229

Summaries for SLC35E1 Gene

GeneCards Summary for SLC35E1 Gene

SLC35E1 (Solute Carrier Family 35 Member E1) is a Protein Coding gene. An important paralog of this gene is SLC35E2B.

UniProtKB/Swiss-Prot for SLC35E1 Gene

  • Putative transporter.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC35E1 Gene

Genomics for SLC35E1 Gene

Regulatory Elements for SLC35E1 Gene

Enhancers for SLC35E1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G016593 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.6 -22.1 -22092 2.1 HDAC1 HDGF RELB ETV6 IKZF2 MIER1 REST MIER2 GATAD2B TBX21 C19orf44 SLC35E1 RN7SL146P CHERP ENSG00000141979 MED26 KLF2 GC19M016221 ENSG00000268087
GH19G016063 1.9 FANTOM5 ENCODE dbSUPER 10.4 +499.5 499469 18.7 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 MCM3 AKAP8 ENSG00000269578 SMIM7 ENSG00000267904 ENSG00000268087 C19orf44 CYP4F24P ENSG00000268743 SIN3B CYP4F11
GH19G016291 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +278.7 278721 3.6 ATF1 KLF17 SIN3A RFX5 GTF3C2 ZNF121 ZNF766 GLIS2 DEK EGR2 AKAP8 ENSG00000269578 ENSG00000268087 ENSG00000267904 SLC35E1 ENSG00000268743 PIR54763 GC19M016240
GH19G016607 1.4 Ensembl ENCODE dbSUPER 12 -36.0 -35973 1.7 HDGF PKNOX1 ARNT INSM2 FEZF1 BMI1 ZNF2 RAD21 ZNF366 ZSCAN5C C19orf44 EPS15L1 MED26 CALR3 SLC35E1 SMIM7 TMEM38A RN7SL146P CHERP CPAMD8
GH19G016626 1.4 ENCODE dbSUPER 11.8 -56.1 -56135 4.1 HDGF PKNOX1 FOXA2 ARNT CREB3L1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 SMIM7 C19orf44 SLC35E1 TMEM38A ENSG00000269044 ENSG00000267275 LOC105372296 MED26
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC35E1 on UCSC Golden Path with GeneCards custom track

Promoters for SLC35E1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107773 -118 1801 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143

Genomic Location for SLC35E1 Gene

Chromosome:
19
Start:
16,549,831 bp from pter
End:
16,572,382 bp from pter
Size:
22,552 bases
Orientation:
Minus strand

Genomic View for SLC35E1 Gene

Genes around SLC35E1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC35E1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC35E1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC35E1 Gene

Proteins for SLC35E1 Gene

  • Protein details for SLC35E1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96K37-S35E1_HUMAN
    Recommended name:
    Solute carrier family 35 member E1
    Protein Accession:
    Q96K37
    Secondary Accessions:
    • Q8NBQ2
    • Q96JV7

    Protein attributes for SLC35E1 Gene

    Size:
    410 amino acids
    Molecular mass:
    44773 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH14557.1; Type=Frameshift; Positions=372, 384; Evidence={ECO:0000305}; Sequence=AAH62562.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB55306.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB55410.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC11565.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SLC35E1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC35E1 Gene

Post-translational modifications for SLC35E1 Gene

  • Ubiquitination at isoforms=2345, Lys358, and isoforms=2367
  • Modification sites at PhosphoSitePlus

Other Protein References for SLC35E1 Gene

No data available for DME Specific Peptides for SLC35E1 Gene

Domains & Families for SLC35E1 Gene

Gene Families for SLC35E1 Gene

Protein Domains for SLC35E1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC35E1 Gene

Graphical View of Domain Structure for InterPro Entry

Q96K37

UniProtKB/Swiss-Prot:

S35E1_HUMAN :
  • Belongs to the TPT transporter family. SLC35E subfamily.
Family:
  • Belongs to the TPT transporter family. SLC35E subfamily.
genes like me logo Genes that share domains with SLC35E1: view

Function for SLC35E1 Gene

Molecular function for SLC35E1 Gene

UniProtKB/Swiss-Prot Function:
Putative transporter.
genes like me logo Genes that share phenotypes with SLC35E1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SLC35E1

CRISPR Products

miRNA for SLC35E1 Gene

miRTarBase miRNAs that target SLC35E1

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC35E1 Gene

Localization for SLC35E1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC35E1 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC35E1 gene
Compartment Confidence
golgi apparatus 5
plasma membrane 3

Gene Ontology (GO) - Cellular Components for SLC35E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IDA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC35E1: view

Pathways & Interactions for SLC35E1 Gene

SuperPathways for SLC35E1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC35E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
genes like me logo Genes that share ontologies with SLC35E1: view

No data available for Pathways by source and SIGNOR curated interactions for SLC35E1 Gene

Transcripts for SLC35E1 Gene

Unigene Clusters for SLC35E1 Gene

Solute carrier family 35, member E1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC35E1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c · 9d
SP1: - - - -
SP2: - - - - -
SP3: - - -
SP4: - -
SP5: -
SP6: - - -

Relevant External Links for SLC35E1 Gene

GeneLoc Exon Structure for
SLC35E1
ECgene alternative splicing isoforms for
SLC35E1

Expression for SLC35E1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC35E1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SLC35E1 Gene

This gene is overexpressed in Placenta (13.3), Breast (7.3), and Monocytes (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SLC35E1 Gene



Protein tissue co-expression partners for SLC35E1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SLC35E1 Gene:

SLC35E1

SOURCE GeneReport for Unigene cluster for SLC35E1 Gene:

Hs.620596

Evidence on tissue expression from TISSUES for SLC35E1 Gene

  • Nervous system(2.1)
genes like me logo Genes that share expression patterns with SLC35E1: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC35E1 Gene

Orthologs for SLC35E1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SLC35E1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC35E1 34 35
  • 99.82 (n)
dog
(Canis familiaris)
Mammalia SLC35E1 34 35
  • 92.5 (n)
cow
(Bos Taurus)
Mammalia SLC35E1 34 35
  • 90.66 (n)
mouse
(Mus musculus)
Mammalia Slc35e1 34 16 35
  • 86.67 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SLC35E1 35
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slc35e1 34
  • 85.63 (n)
oppossum
(Monodelphis domestica)
Mammalia SLC35E1 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC35E1 34 35
  • 77.78 (n)
lizard
(Anolis carolinensis)
Reptilia SLC35E1 35
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia slc35e1 34
  • 74.13 (n)
Str.215 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.11369 34
zebrafish
(Danio rerio)
Actinopterygii slc35e1 34 35
  • 70.51 (n)
Dr.3762 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000544 34
  • 58.28 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG14621 34 35
  • 57.08 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR543C 34
  • 47.49 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F08569g 34
  • 40.44 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SLY41 34
  • 38.65 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons GPT1 34
  • 47.17 (n)
rice
(Oryza sativa)
Liliopsida Os08g0187800 34
  • 45.62 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 53 (a)
OneToMany
bread mold
(Neurospora crassa)
Ascomycetes NCU05453 34
  • 47.62 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC83.11 34
  • 40.14 (n)
Species where no ortholog for SLC35E1 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SLC35E1 Gene

ENSEMBL:
Gene Tree for SLC35E1 (if available)
TreeFam:
Gene Tree for SLC35E1 (if available)

Paralogs for SLC35E1 Gene

Paralogs for SLC35E1 Gene

(1) SIMAP similar genes for SLC35E1 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for SLC35E1 Gene

genes like me logo Genes that share paralogs with SLC35E1: view

Variants for SLC35E1 Gene

Sequence variations from dbSNP and Humsavar for SLC35E1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000004711 -- 16,574,019(+) TTCCA(C/G)TGACA intron-variant, upstream-variant-2KB
rs1000093968 -- 16,571,540(+) TAATG(A/G)TCCGG upstream-variant-2KB, reference, missense
rs1000141944 -- 16,574,272(+) CTGAC(A/T)GTAGT intron-variant, upstream-variant-2KB
rs1000257632 -- 16,570,946(+) CAAAA(A/C)AATTA intron-variant, upstream-variant-2KB
rs1000286888 -- 16,564,772(+) AAAAT(C/T)AGTCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC35E1 Gene

Variant ID Type Subtype PubMed ID
nsv510757 CNV deletion 20534489

Variation tolerance for SLC35E1 Gene

Residual Variation Intolerance Score: 25.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.68; 14.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SLC35E1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC35E1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC35E1 Gene

Disorders for SLC35E1 Gene

Relevant External Links for SLC35E1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC35E1

No disorders were found for SLC35E1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC35E1 Gene

Publications for SLC35E1 Gene

  1. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  5. The HECT type ubiquitin ligase NEDL2 is degraded by anaphase-promoting complex/cyclosome (APC/C)-Cdh1, and its tight regulation maintains the metaphase to anaphase transition. (PMID: 24163370) Lu L. … Zhang L. (J. Biol. Chem. 2013) 3 64

Products for SLC35E1 Gene

Sources for SLC35E1 Gene

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