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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SLC35D3 Gene

protein-coding   GIFtS: 41
GCID: GC06P137243

solute carrier family 35, member D3


(Previous symbol: FRCL1)
 Explore 2 diseases affiliated with
SLC35D3 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for SLC35D3    

Aliases
for SLC35D3 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Solute Carrier Family 35, Member D31 2
FRCL11 2 3
Fringe Connection-Like Protein 12 3
BA55K22.31
Frc, Fringe-Like 12
Solute Carrier Family 35 Member D32

External Ids:    HGNC: 156211   Entrez Gene: 3401462   Ensembl: ENSG000001827477   OMIM: 6125195   UniProtKB: Q5M8T23   

Export aliases for SLC35D3 gene to outside databases

Previous GC identifers: GC06P137178 GC06P137223 GC06P137218 GC06P137279 GC06P137287 GC06P134808


Summaries
for SLC35D3 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
UniProtKB/Swiss-Prot: S35D3_HUMAN, Q5M8T2
Function: May play a role in hemostasis as a regulator of the biosynthesis of platelet-dense granules (By similarity)




Genomic Views
for SLC35D3 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NC_018917.1  NT_025741.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SLC35D3 gene promoter:
         AhR   AML1a   Pbx1a   Arnt   E47   AREB6   Cart-1   NF-Y   CBF(2)   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for SLC35D3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC35D3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q23.3   Ensembl cytogenetic band:  6q23.3   HGNC cytogenetic band: 6q23.2

SLC35D3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC35D3 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06P137243:  view genomic region     (about GC identifiers)

Start:
 137,243,402 bp from pter      End:
 137,246,777 bp from pter
Size:
 3,376 bases      Orientation:
 plus strand

Proteins
for SLC35D3 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: S35D3_HUMAN, Q5M8T2 (See protein sequence)
Recommended Name: Solute carrier family 35 member D3  
Size: 416 amino acids; 44183 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Secondary accessions: B4DI58 Q5QNZ6 Q6NX71

Explore the universe of human proteins at neXtProt for SLC35D3: NX_Q5M8T2

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q5M8T2

    • SLC35D3 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_001008783.1  
    ENSEMBL proteins: 
     ENSP00000333591  

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    Uscn Proteins for SLC35D3

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral to membrane IEA--


    SLC35D3 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for SLC35D3 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    SLC35D3 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR004853 DUF250

    Graphical View of Domain Structure for InterPro Entry Q5M8T2

    ProtoNet protein and cluster: Q5M8T2

    UniProtKB/Swiss-Prot: S35D3_HUMAN, Q5M8T2
    Similarity: Belongs to the TPT transporter family. SLC35D subfamily


    Function
    for SLC35D3 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: S35D3_HUMAN, Q5M8T2
    Function: May play a role in hemostasis as a regulator of the biosynthesis of platelet-dense granules (By similarity)

    miRNA
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    1 GenomeRNAi human phenotype for SLC35D3:
     Increased gamma-H2AX phosphory 

    Animal Models:
         3 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Slc35d3):
     hematopoietic system  homeostasis/metabolism  pigmentation 

    SLC35D3 for phenotypes           About GeneDecksing


    Pathways & Interactions
    for SLC35D3 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC35D3

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008643carbohydrate transport IEA--


    SLC35D3 for ontologies           About GeneDecksing



    Drugs & Compounds
    for SLC35D3 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SLC35D3
    Search CenterWatch for drugs/clinical trials and news about SLC35D3 / S35D3 

    Transcripts
    for SLC35D3 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for SLC35D3 gene: 
    NM_001008783.1  

    Unigene Cluster for SLC35D3:

    Solute carrier family 35, member D3
    Hs.369703  [show with all ESTs]
    Unigene Representative Sequence: BC087842
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000331858(uc003qhe.3)

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    7 QIAGEN miScript miRNA Assays for microRNAs that regulate SLC35D3:
    hsa-miR-30c hsa-miR-3163 hsa-miR-30a hsa-miR-30b hsa-miR-30d hsa-miR-340 hsa-miR-30e
    SwitchGear 3'UTR luciferase reporter plasmid: SLC35D3 3' UTR sequence
    Inhib. RNA
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    Clone
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    Additional cDNA sequence: 

    AK295424.1 AK316095.1 BC067217.1 BC087842.1 

    1 DOTS entry:

    DT.99963968 

    1 AceView cDNA sequence:

    BQ888132 

    GeneLoc Exon Structure


    Expression
    for SLC35D3 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SLC35D3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TACCAAGAGT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    SLC35D3 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Extraembryonic MesodermExtraembryonic Capillary PlexusExtraembryonic AngioblastsEndothelium
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See SLC35D3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SLC35D3

    SOURCE GeneReport for Unigene cluster: Hs.369703
        SABiosciences Custom PCR Arrays for SLC35D3
    Primer
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    In Situ
    Assay Products:     
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    Orthologs
    for SLC35D3 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of eukaryotes.

    Orthologs for SLC35D3 gene from 5/18 species (see all 18)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    chicken
    (Gallus gallus)    		 Aves SLC35D31 solute carrier family 35, member D3 75.45(n)
    74.39(a)    		   428614  XM_426171.2  XP_426171.2 
    lizard
    (Anolis carolinensis)    		 Reptilia SLC35D36
    		 --
    		 76(a)
    		 1 ↔ 1
    		 GL343200.1(2060674-2069004)
    zebrafish
    (Danio rerio)    		 Actinopterygii LOC5656031 solute carrier family 35 member D3-like 63.57(n)
    64.3(a)    		   565603  XM_688872.5  XP_693964.1 
    thale cress
    (Arabidopsis thaliana)    		 eudicotyledons AT4G316001 UDP-N-acetylglucosamine (UAA) transporter family protein 43.28(n)
    30.49(a)    		   829287  NM_119309.3  NP_567879.1 
    rice
    (Oryza sativa)    		 Liliopsida Os06g01881001 hypothetical protein 42.87(n)
    30.59(a)    		   4340355  NM_001063555.1  NP_001057020.1 


    ENSEMBL Gene Tree for SLC35D3 (if available)
    TreeFam Gene Tree for SLC35D3 (if available) 

    Paralogs
    for SLC35D3 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SLC35D3 gene
    SLC35D12  SLC35D22  

    SLC35D3 for paralogs           About GeneDecksing



    Genomic Variants
    for SLC35D3 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SLC35D3
    DNA2.0 Custom Variant and Variant Library Synthesis for SLC35D3

    Disorders / Diseases
    for SLC35D3 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    SLC35D3 for disorders           About GeneDecksing

    OMIM gene information: 612519    OMIM disorders: --

    2 diseases for SLC35D3:    About MalaCards
    chediak-higashi syndrome    hermansky-pudlak syndrome

    2 diseases from the University of Copenhagen DISEASES database for SLC35D3:
    Hermansky-Pudlak syndrome     Chediak-Higashi syndrome

    Export disorders for SLC35D3 gene to outside databases

    Publications
    for SLC35D3 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SLC35D3 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with SLC35D3)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    3. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)2 Mungall A.J.... Beck S. (2003)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    External Searches for SLC35D3 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing SLC35D3 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 340146 HGNC: 15621 AceView: SLC35D3 Ensembl:ENSG00000182747 euGenes: HUgn340146
    ECgene: SLC35D3 H-InvDB: SLC35D3

    Other Databases showing SLC35D3 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing SLC35D3 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SLC35D3 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for SLC35D3 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for SLC35D3 gene:
    Search GeneIP for patents involving SLC35D3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    for SLC35D3 gene

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    About This Section

     
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