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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

SLC35B1 Gene

protein-coding GIFtS: 49
GCID: GC17M047779

solute carrier family 35, member B1

Explore 1 disease affiliated with
SLC35B1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Solute Carrier Family 35, Member B1¹ ²		Solute Carrier Family 35 Member B1²
UGTREL1¹ ² ³ ⁵		UDP-Galactose Transporter Related²
HUGTrel1¹		UGTrel1³
UDP-Galactose Transporter-Related Protein 1² ³

External Ids:	HGNC: 20798¹	Entrez Gene: 10237²	Ensembl: ENSG00000121073⁷	OMIM: 610790⁵	UniProtKB: P78383³

Export aliases for SLC35B1 gene to outside databases

Previous GC identifers: GC17M048120 GC17M048253 GC17M045133 GC17M043143

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: S35B1_HUMAN, P78383

Function: Probable sugar transporter (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000017.10 NC_018928.1 NT_010783.15

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the SLC35B1 gene promoter:
HFH-3 Bach2 HNF-4alpha2 HNF-4alpha1 FOXI1 Nkx6-1 c-Myb Zic3 MRF-2
Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): SLC35B1 promoter sequence

Search SABiosciences Chromatin IP Primers for SLC35B1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC35B1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q21.33 Ensembl cytogenetic band: 17q21.33 HGNC cytogenetic band: 17q21.32

SLC35B1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC35B1 gene location

GeneLoc information about chromosome 17 GeneLoc Exon Structure

GeneLoc location for GC17M047779: view genomic region (about GC identifiers)

Start:	47,778,305 bp from pter	End:	47,786,376 bp from pter
Size:	8,072 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: S35B1_HUMAN, P78383 (See protein sequence)

Recommended Name: Solute carrier family 35 member B1

Size: 322 amino acids; 35760 Da

Subcellular location: Endoplasmic reticulum membrane; Multi-pass membrane protein (Potential)

Secondary accessions: Q96EW7

Explore the universe of human proteins at neXtProt for SLC35B1: NX_P78383

SLC35B1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_005818.1

ENSEMBL proteins:

ENSP00000240333 ENSP00000425179 ENSP00000423323 ENSP00000424367 ENSP00000424857

ENSP00000426961 ENSP00000427689 ENSP00000422104 ENSP00000426402 ENSP00000409548

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	Browse ProSpec Recombinant Proteins
	Uscn Proteins for SLC35B1

Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005789	endoplasmic reticulum membrane	IEA	--
GO:0005792	microsome	--	--
GO:0016021	integral to membrane	IEA	--
GO:0043231	intracellular membrane-bounded organelle	TAS	9010752

SLC35B1 for ontologies About GeneDecksing

SLC35B1 Antibody Products:

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	Uscn Antibodies for SLC35B1
	Search ThermoFisher Antibodies for SLC35B1

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	Uscn ELISAs and CLIAs for SLC35B1

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

SLC35B1 for domains About GeneDecksing

1 InterPro domain/family:

IPR013657 UAA

Graphical View of Domain Structure for InterPro Entry P78383

ProtoNet protein and cluster: P78383

2 Blocks protein families:

IPB000620 Protein of unknown function DUF6

IPB013657 UAA transporter

UniProtKB/Swiss-Prot: S35B1_HUMAN, P78383

Domain: The di-lysine motif confers endoplasmic reticulum localization for type I membrane proteins (By similarity)

Similarity: Belongs to the nucleotide-sugar transporter family. SLC35B subfamily

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: S35B1_HUMAN, P78383

Function: Probable sugar transporter (By similarity)

miRNA Products:		OriGene 3'-UTR Clone: SLC35B1 Browse MicroRNA Expression Plasmids
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Gene Editing
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DNA2.0 Custom Protein Engineering Service for SLC35B1

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Cell Line Products:		GenScript Custom overexpressing Cell Line Services for SLC35B1
		Search LifeMap BioReagents cell lines for SLC35B1

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35B1

Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005459	UDP-galactose transmembrane transporter activity	TAS	9010752

SLC35B1 for ontologies About GeneDecksing

1 GenomeRNAi human phenotype for SLC35B1:

Increased cell number in G1, s

Animal Models:
1 MGI phenotypic allele

for Slc35b1 (no phenotypes)

SLC35B1 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for SLC35B1

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

4 Interacting proteins for SLC35B1 (P78383³ ENSP00000240333⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
MED4	Q9NPJ6³, ENSP00000258648⁴	I2D: score=4 STRING: ENSP00000258648
ING2	Q9H160³	I2D: score=5
SPTLC2	O15270³	I2D: score=5
ASNA1	ENSP00000349887⁴	STRING: ENSP00000349887

About this table

Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006810	transport	TAS	9010752
GO:0055085	transmembrane transport	--	--
GO:0072334	UDP-galactose transmembrane transport	TAS	9010752

SLC35B1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for SLC35B1
Search CenterWatch for drugs/clinical trials and news about SLC35B1 / S35B1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for SLC35B1 gene:

NM_005827.1

Unigene Cluster for SLC35B1:

Solute carrier family 35, member B1

Hs.154073 [show with all ESTs]

Unigene Representative Sequence: AK124975

18/20 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 20):

ENST00000240333 ENST00000504260 ENST00000502406(uc002ipj.1) ENST00000508749

ENST00000507477 ENST00000507773 ENST00000503334 ENST00000508520 ENST00000502268

ENST00000513508 ENST00000435059(uc010wly.1) ENST00000514907 ENST00000515850

ENST00000511763 ENST00000508926 ENST00000511657 ENST00000509781 ENST00000508607

miRNA Products:		OriGene 3'-UTR Clone: SLC35B1 Browse OriGene MicroRNA Expression Plasmids
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Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
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		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SLC35B1

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Additional cDNA sequence:

AK098056.1 AK124975.1 AK293563.1 AK296073.1 BC011888.2 BX641166.1 D87989.1 Z36793.1

17 DOTS entries:

DT.454326 DT.100692132 DT.100829622 DT.102830995 DT.92438015 DT.92438012 DT.97814900 DT.100788102

DT.86854544 DT.92438022 DT.440644 DT.92438011 DT.92438019 DT.100788098 DT.40108910 DT.92438018

DT.97859963

24/285 AceView cDNA sequences (see all 285):

BM796687 CB148556 BM970080 AW389759 BM663556 CR600895 CA488916 CR625983

BQ027137 AI089832 BM691073 CR618351 AI252816 BM831488 BC011888 CR595746

N72699 AI951219 BV180435 D87989 CR626561 CK825555 AI583044 BE168096

GeneLoc Exon Structure

5/12 Alternative Splicing Database (ASD) splice patterns (SP) for SLC35B1 (see all 12) About this scheme

ExUns:	1	^	2	^	3a	·	3b	·	3c	·	3d	^	4	^	5	^	6a	·	6b	·	6c	^	7a	·	7b	^	8a	·	8b	^	9a	·	9b	·	9c	^	10a	·	10b	·	10c	^	11a	·	11b	^	12
SP1:													-								-		-				-								-		-								-
SP2:					-		-		-		-						-				-		-				-								-		-
SP3:													-				-				-		-				-								-		-
SP4:					-		-		-		-										-		-
SP5:													-		-		-				-		-				-

ECgene alternative splicing isoforms for SLC35B1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

SLC35B1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CAGTGGGTGG

About this image

SLC35B1 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Bone

Thoracic Rib

Bone

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See SLC35B1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SLC35B1

SOURCE GeneReport for Unigene cluster: Hs.154073

SABiosciences Custom PCR Arrays for SLC35B1

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In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35B1

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for SLC35B1 gene from 9/33 species (see all 33) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	SLC35B1¹	solute carrier family 35, member B1	77.67(n) 88.16(a)		395185 NM_204514.1 NP_989845.1
lizard (Anolis carolinensis)	Reptilia	SLC35B1⁶	--	76(a)	1 ↔ 1	6(76776160-76792994)
African clawed frog (Xenopus laevis)	Amphibia	AJ506039.1²	--	77.11(n)		AJ506039.1
zebrafish (Danio rerio)	Actinopterygii	slc35b1¹	solute carrier family 35, member B1	70.71(n) 74.44(a)		447844 NM_001004583.1 NP_001004583.1
fruit fly (Drosophila melanogaster)	Insecta	CG5802¹	CG5802	54.48(n) 51.46(a)		42510 NM_001104383.2 NP_001097853.1
worm (Caenorhabditis elegans)	Secernentea	hut-1¹	Protein HUT-1	50.78(n) 47.67(a)		176690 NM_067251.2 NP_499652.1
baker's yeast (Saccharomyces cerevisiae)	Saccharomycetes	HUT1¹	Hut1p	41.95(n) 29.59(a)		855832 NP_015080.1
thale cress (Arabidopsis thaliana)	eudicotyledons	UTR3¹	UDP-galactose transporter 3	48.18(n) 37.62(a)		837998 NM_101303.3 NP_563949.1
rice (Oryza sativa)	Liliopsida	Os06g0593100¹	hypothetical protein	48.24(n) 37.2(a)		4341421 NM_001064510.1 NP_001057975.1

ENSEMBL Gene Tree for SLC35B1 (if available)
TreeFam Gene Tree for SLC35B1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for SLC35B1 gene

SLC35B3² SLC35B2²

2 SIMAP similar genes for SLC35B1 using alignment to 11 protein entries: S35B1_HUMAN (see all proteins):

DKFZp686B17238 SLC35B2

SLC35B1 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 17 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs144594687^1,2		--	47778461(+)	`GCACAA/GTTCTG`	1	--	ds500¹		0	--	--	--	--
rs186713940^1,2		--	47778468(+)	`TCTGCA/GATCTC`	1	--	ds500¹		0	--	--	--	--
rs191128406^1,2		--	47778515(+)	`GAATCG/TCCCAC`	1	--	ds500¹		0	--	--	--	--
rs183248059^1,2		--	47778541(+)	`ACACCC/TGTGAG`	1	--	ds500¹		0	--	--	--	--
rs143574468^1,2	C,	--	47778636(+)	`AAAAA-/AA AAAACCCACC`	1	--	ds500¹		0	--	--	--	--
rs146168765^1,2	C,	--	47778680(+)	`AGAAT-/ATGTGA`	1	--	ds500¹		0	--	--	--	--
rs148463432^1,2		--	47778700(+)	`ATTTTA/GTTTTA`	1	--	ut3¹		0	--	--	--	--
rs8186^1,2	C,F,H,	--	47778793(-)	`ATCAAG/AAATAT`	1	--	ut3¹		15		MN NS EA NA CSA WA EU	2426
rs112437889^1,2	C	--	47778803(+)	`TGTGGA/G/TGGTAG`	2	--	ut3¹		1		CSA	1
rs15166^1,2	C	--	47778853(-)	`GCCAAG/TTTTGG`	2	K N	mis¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for SLC35B1 (47778305 - 47786376 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for SLC35B1: --

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SLC35B1

DNA2.0 Custom Variant and Variant Library Synthesis for SLC35B1

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

SLC35B1 for disorders           About GeneDecksing

OMIM gene information: 610790    OMIM disorders: --

1 disease for SLC35B1:    About MalaCards

malaria

Human Genome Epidemiology (HuGE) Navigator: SLC35B1 (1 document)

Export disorders for SLC35B1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for SLC35B1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with SLC35B1)

Utopia: connect your pdf to the dynamic
world of online information

Molecular cloning and characterization of a novel isoform of the human UDP-galactose transporter, and of related complementary DNAs belonging to the nucleotide-sugar transporter gene family. (PubMed id 9010752)^{1, 2, 3} Ishida N.... Kawakita M. (1996)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)¹ OlA!h J....OvA!di J. (2011)
Investigation of genetic susceptibility factors for h uman longevity - A targeted nonsynonymous SNP study. (PubMed id 20800603)¹ Flachsbart F....Nebel A. (2010)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)¹ Ota T.... Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression. (PubMed id 8617505)¹ Lennon G....Soares M.B. (1996)
The addition of 5'-coding information to a 3'-directed cDNA library improves analysis of gene expression. (PubMed id 8076819)¹ Matoba R....Matsubara K. (1994)
The ortholog of human solute carrier family 35 member B1 (UDP-galactose transporter-related protein 1) is involved in maintenance of ER homeostasis and essential for larval development in Caenorhabditis elegans. (PubMed id 19270184)⁹ Dejima K....Nomura K. (2009)
Hut1 proteins identified in Saccharomyces cerevisiae and Schizosaccharomyces pombe are functional homologues involved in the protein-folding process at the endoplasmic reticulum. (PubMed id 11284010)⁹ Nakanishi H....Jigami Y. (2001)

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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 10237	HGNC: 20798	AceView: SLC35B1	Ensembl:ENSG00000121073	euGenes: HUgn10237
ECgene: SLC35B1	H-InvDB: SLC35B1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for SLC35B1	Pharmacogenomics, SNPs, Pathways
GGDB	http://riodb.ibase.aist.go.jp/rcmg/ggdb/

Intellectual Property for SLC35B1 gene
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Patent Information for SLC35B1 gene:
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SLC35B1 Gene

solute carrier family 35, member B1

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SLC35B1 Gene

solute carrier family 35, member B1

Aliasesfor SLC35B1 gene

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