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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SLC35A4 Gene

protein-coding   GIFtS: 43
GCID: GC05P139944

Solute Carrier Family 35, Member A4

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Solute Carrier Family 35, Member A41 2
Probable UDP-Sugar Transporter Protein SLC35A42
Solute Carrier Family 35 (UDP-Galactose Transporter), Member A42
Tumor Rejection Antigen2
Solute Carrier Family 35 Member A43

External Ids:    HGNC: 207531   Entrez Gene: 1138292   Ensembl: ENSG000001760877   UniProtKB: Q96G793   

Export aliases for SLC35A4 gene to outside databases

Previous GC identifers: GC05P140528 GC05P139927 GC05P139972 GC05P139924 GC05P135089


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SLC35A4 Gene: 
SLC35A4 (solute carrier family 35, member A4) is a protein-coding gene. Diseases associated with SLC35A4 include lung cancer. GO annotations related to this gene include sugar:hydrogen symporter activity. An important paralog of this gene is SLC35A1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NC_018916.2  NT_029289.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SLC35A4 gene promoter:
         TBP   p53   NRSF form 1   TFIID   NRSF form 2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLC35A4 promoter sequence
   Search SABiosciences Chromatin IP Primers for SLC35A4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC35A4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q31.3   Ensembl cytogenetic band:  5q31.3   HGNC cytogenetic band: 5q31.3

SLC35A4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC35A4 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P139944:  view genomic region     (about GC identifiers)

Start:
139,944,041 bp from pter      End:
139,948,688 bp from pter
Size:
4,648 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: S35A4_HUMAN, Q96G79 (See protein sequence)
Recommended Name: Probable UDP-sugar transporter protein SLC35A4  
Size: 324 amino acids; 34593 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential). Golgi apparatus (By similarity)
Miscellaneous: Classified as NST family 1 subfamily D in a phylogenic study. Family 1 seems to be the most recent
in evolution
Secondary accessions: A8K013

Explore the universe of human proteins at neXtProt for SLC35A4: NX_Q96G79

Explore proteomics data for SLC35A4 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96G79

  • SLC35A4 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SLC35A4 Protein Expression
    REFSEQ proteins: NP_542401.1  
    ENSEMBL proteins: 
     ENSP00000327133   ENSP00000424566  

    Human Recombinant Protein Products for SLC35A4: 
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    Novus Biologicals SLC35A4 Protein
    Novus Biologicals SLC35A4 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for SLC35A4 

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000139Golgi membrane IEA--
    GO:0016020membrane ----
    GO:0016021integral to membrane IEA--

    SLC35A4 for ontologies           About GeneDecksing



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    Cloud-Clone Corp. ELISAs for SLC35A4 
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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    SLC: Solute carriers

    IUPHAR Guide to PHARMACOLOGY protein family classification: MGC2541 
    SLC35 family of nucleotide sugar transporters

    2 InterPro protein domains:
     IPR007271 Nuc_sug_transpt
     IPR021189 UDP/CMP-sugar_transptr

    Graphical View of Domain Structure for InterPro Entry Q96G79

    ProtoNet protein and cluster: Q96G79

    UniProtKB/Swiss-Prot: S35A4_HUMAN, Q96G79
    Similarity: Belongs to the nucleotide-sugar transporter family. SLC35A subfamily


    SLC35A4 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005351sugar:hydrogen symporter activity IEA--
         
    SLC35A4 for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for SLC35A4 
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    miRNA
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    miRTarBase miRNAs that target SLC35A4:
    hsa-mir-125b (MIRT004997)

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    8/23 QIAGEN miScript miRNA Assays for microRNAs that regulate SLC35A4 (see all 23):
    hsa-miR-3938 hsa-miR-125a-5p hsa-miR-137 hsa-miR-330-5p hsa-miR-15a hsa-miR-124 hsa-miR-424 hsa-miR-125b
    SwitchGear 3'UTR luciferase reporter plasmidSLC35A4 3' UTR sequence
    Inhib. RNA
    Products:
        
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    Gene Editing
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    Clone
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35A4


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC35A4

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008643carbohydrate transport ----

    SLC35A4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SLC35A4 (S35A4)

    Search CenterWatch for drugs/clinical trials and news about SLC35A4 / S35A4

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SLC35A4 gene: 
    NM_080670.2  

    Unigene Cluster for SLC35A4:

    Solute carrier family 35, member A4
    Hs.406840  [show with all ESTs]
    Unigene Representative Sequence: AF445025
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000323146(uc003lgg.1) ENST00000508770 ENST00000514199(uc003lgh.1)
    ENST00000514137
    miRNA
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    8/23 QIAGEN miScript miRNA Assays for microRNAs that regulate SLC35A4 (see all 23):
    hsa-miR-3938 hsa-miR-125a-5p hsa-miR-137 hsa-miR-330-5p hsa-miR-15a hsa-miR-124 hsa-miR-424 hsa-miR-125b
    SwitchGear 3'UTR luciferase reporter plasmidSLC35A4 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
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    Primer
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    OriGene qPCR primer pairs and template standards for SLC35A4
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC35A4
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    Additional mRNA sequence: 

    AF445025.1 AJ420598.1 AK122601.1 AK289378.1 AK307282.1 AL833972.1 BC009906.2 

    16 DOTS entries:

    DT.101984984  DT.100810892  DT.95204941  DT.75156810  DT.92458990  DT.100810894  DT.100810882  DT.120809307 
    DT.97855095  DT.95374368  DT.100030141  DT.92458992  DT.120809256  DT.91799426  DT.92458996  DT.99957431 

    24/586 AceView cDNA sequences (see all 586):

    CF125322 BE535472 BM468941 BQ672949 CF126050 BM722155 CB133711 BQ351584 
    BQ227085 BE718418 BQ351588 CO401886 BE718400 BE718408 BM999635 BQ351579 
    BE718405 CN480228 BE718452 BE718420 BU556604 BQ333714 AJ420598 BU073381 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for SLC35A4    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c
    SP1:              -                                 
    SP2:              -                                 
    SP3:                                                


    ECgene alternative splicing isoforms for SLC35A4

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SLC35A4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CTTCCCACTC
    SLC35A4 Expression
    About this image


    See SLC35A4 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SLC35A4

    SOURCE GeneReport for Unigene cluster: Hs.406840
        SABiosciences Custom PCR Arrays for SLC35A4
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35A4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for SLC35A4 gene from 8/14 species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Slc35a41 , 5 solute carrier family 35, member A41, 5 85.96(n)1
    88.85(a)1
      18 (19.46 cM)5
    678431  NM_001083317.11  NP_001076786.11 
     366795795 
    chicken
    (Gallus gallus)
    Aves SLC35A41 solute carrier family 35, member A4 65.24(n)
    63.33(a)
      416136  XM_414469.3  XP_414469.3 
    lizard
    (Anolis carolinensis)
    Reptilia SLC35A46
    Uncharacterized protein
    61(a)
    1 ↔ 1
    4(77876878-77877810)
    African clawed frog
    (Xenopus laevis)
    Amphibia 480344402   -- 74.59(n)    48034440 
    zebrafish
    (Danio rerio)
    Actinopterygii BI709828.12   -- 73.33(n)    BI709828.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG140406
    --
    18(a)
    1 → many
    2L(5052843-5054575)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT5G417601 Nucleotide-sugar transporter family protein 42.39(n)
    32.75(a)
      834180  NM_001036915.3  NP_001031992.1 
    rice
    (Oryza sativa)
    Liliopsida Os06g05234001 hypothetical protein 42.13(n)
    33.68(a)
      4341175  NM_001064288.1  NP_001057753.1 


    ENSEMBL Gene Tree for SLC35A4 (if available)
    TreeFam Gene Tree for SLC35A4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SLC35A4 gene
    SLC35A12  SLC35A22  SLC35A32  SLC35A52  

    SLC35A4 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for SLC35A4
    PGOHUM00000263129


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/94 SNPs in SLC35A4 are shown (see all 94)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs175241231,2
    C,F,H--139946265(+) CATCTA/GTGCGG 1 -- ut51 ese37Minor allele frequency- G:0.01NA NS 832
    rs115513121,2
    C,F--139946269(+) TATGCG/AGCTCA 1 -- ut51 ese31Minor allele frequency- A:0.04NA 120
    rs1421672061,2
    --139946371(+) AGGCAA/GGATGA 1 -- ut510--------
    rs1448159221,2
    C--139946392(+) CTTCAA/GGTGGA 1 -- ut510--------
    rs115513131,2
    C,H--139946545(+) CCATGG/TGACTC 1 -- ut512Minor allele frequency- T:0.01NS NA 182
    rs1485892001,2
    --139946584(+) CAGCCC/TCTTAC 1 -- ut510--------
    rs1429918691,2
    C--139946764(+) GTGTAA/GAGGAT 2 K E mis10--------
    rs2018833741,2
    --139946839(+) CTGCCA/GTGTAC 2 M V mis10--------
    rs2012849101,2
    C--139946846(+) GTACGG/TTGCCC 2 G V mis10--------
    rs617453361,2
    C,F--139946888(+) CGGCCG/AAGTGC 2 /Q /R mis14Minor allele frequency- A:0.04NS WA NA EU 6063

    HapMap Linkage Disequilibrium report for SLC35A4 (139944041 - 139948688 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for SLC35A4:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv462462CNV Loss19166990

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing SLC35A4
    DNA2.0 Custom Variant and Variant Library Synthesis for SLC35A4

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    2 diseases for SLC35A4:    About MalaCards
    lung cancer    


    SLC35A4 for disorders           About GeneDecksing


    Export disorders for SLC35A4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SLC35A4 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with SLC35A4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
    2. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    5. Gene and peptide analyses of newly defined lung cancer antigens recognized by HLA-A2402-restricted tumor-specific cytotoxic T lymphocytes. (PubMed id 12782588)1 Yamada A.... Itoh K. (2003)
    6. The nucleotide-sugar transporter family: a phylogenetic approach. (PubMed id 12770764)2 Martinez-Duncker I.... Oriol R. (2003)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 113829 HGNC: 20753 AceView: SLC35A4 Ensembl:ENSG00000176087 euGenes: HUgn113829
    ECgene: SLC35A4 H-InvDB: SLC35A4

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SLC35A4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SLC35A4 gene:
    Search GeneIP for patents involving SLC35A4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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