Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SLC2A1-AS1 Gene

Subcategory (RNA class) for SLC2A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC2A1-AS1 Gene

  • SLC2A1 Antisense RNA 1 2 3 5
  • SLC2A1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC2A1-AS1 Gene

Previous GeneCards Identifiers for SLC2A1-AS1 Gene

  • GC01P043427

Summaries for SLC2A1-AS1 Gene

GeneCards Summary for SLC2A1-AS1 Gene

SLC2A1-AS1 (SLC2A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC2A1-AS1 Gene

Genomics for SLC2A1-AS1 Gene

Regulatory Elements for SLC2A1-AS1 Gene

Enhancers for SLC2A1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F042926 1.3 FANTOM5 Ensembl ENCODE 54 -21.2 -21180 22.0 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 ZNF766 ZNF143 SLC2A1-AS1 SZT2 SLC2A1 PPIH RNU6-880P FOXJ3 KDM4A LOC105378682 ZNF691 LOC105378687
GH01F042965 1.3 FANTOM5 Ensembl ENCODE 43.2 +7.8 7848 2.9 ATF1 PKNOX1 ARNT CREB3L1 SIN3A FEZF1 ZNF121 GLIS2 GATA2 FOS SLC2A1-AS1 RNU6-880P HYI SLC2A1 CCDC30
GH01F042971 1.1 Ensembl ENCODE 43.2 +13.1 13092 1.2 JUND SMARCA4 POLR2A IKZF1 FOS SLC2A1-AS1 CFAP57 EBNA1BP2 MIR6733 SLC2A1 RNU6-880P
GH01F042949 0.9 FANTOM5 ENCODE 42.1 -2.2 -2166 15.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 YBX1 YY1 CBX5 SLC2A1-AS1 SLC2A1 RNU6-880P ERMAP LOC101929609 CLDN19 SVBP ATP6V1E1P1
GH01F042973 0.2 ENCODE 10.1 +14.5 14472 0.7 BCOR ZFP37 KLF17 ZMYM3 HIC1 POLR2A KDM1A TRIM28 SLC2A1-AS1 SLC2A1 RNU6-880P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SLC2A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC2A1-AS1 Gene

Chromosome:
1
Start:
42,959,049 bp from pter
End:
42,983,358 bp from pter
Size:
24,310 bases
Orientation:
Plus strand

Genomic View for SLC2A1-AS1 Gene

Genes around SLC2A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC2A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC2A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC2A1-AS1 Gene

Proteins for SLC2A1-AS1 Gene

Post-translational modifications for SLC2A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC2A1-AS1 Gene

Domains & Families for SLC2A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC2A1-AS1 Gene

Function for SLC2A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC2A1-AS1 Gene

Localization for SLC2A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC2A1-AS1 Gene

Pathways & Interactions for SLC2A1-AS1 Gene

SuperPathways for SLC2A1-AS1 Gene

No Data Available

Interacting Proteins for SLC2A1-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC2A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC2A1-AS1 Gene

Transcripts for SLC2A1-AS1 Gene

mRNA/cDNA for SLC2A1-AS1 Gene

(2) Additional mRNA sequences :
(20) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC2A1-AS1 Gene

SLC2A1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC2A1-AS1 Gene

No ASD Table

Relevant External Links for SLC2A1-AS1 Gene

GeneLoc Exon Structure for
SLC2A1-AS1
ECgene alternative splicing isoforms for
SLC2A1-AS1

Expression for SLC2A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC2A1-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLC2A1-AS1 Gene:

Hs.260928
genes like me logo Genes that share expression patterns with SLC2A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC2A1-AS1 Gene

Orthologs for SLC2A1-AS1 Gene

Evolution for SLC2A1-AS1 Gene

ENSEMBL:
Gene Tree for SLC2A1-AS1 (if available)
TreeFam:
Gene Tree for SLC2A1-AS1 (if available)

No data available for Orthologs for SLC2A1-AS1 Gene

Paralogs for SLC2A1-AS1 Gene

No data available for Paralogs for SLC2A1-AS1 Gene

Variants for SLC2A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC2A1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs80359841 Pathogenic 42,958,633(-) GCAAG(A/G)TGAGT upstream-variant-2KB, splice-donor-variant
rs587784388 Likely benign 42,958,653(-) CGCTG(C/T)CATGG upstream-variant-2KB, utr-variant-5-prime
rs796053244 Likely benign 42,958,701(-) CGCCC(G/T)TCGCC upstream-variant-2KB, utr-variant-5-prime
rs375001117 Benign 42,958,677(+) TCTGG(C/G)TGCGC upstream-variant-2KB, utr-variant-5-prime
rs587781171 Benign 42,958,622(-) CGCGC(G/T)CCCGC intron-variant, upstream-variant-2KB

Relevant External Links for SLC2A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC2A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC2A1-AS1 Gene

Disorders for SLC2A1-AS1 Gene

Relevant External Links for SLC2A1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC2A1-AS1

No disorders were found for SLC2A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC2A1-AS1 Gene

Publications for SLC2A1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SLC2A1-AS1 Gene

Sources for SLC2A1-AS1 Gene

Content
Loading form....