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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

SLC29A1 Gene

protein-coding GIFtS: 67
GCID: GC06P044187

solute carrier family 29 (nucleoside transporters), member...

(Previous symbol: ENT1)

Explore 38 diseases affiliated with
SLC29A1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Solute Carrier Family 29 (Nucleoside Transporters), Member 1¹ ²		Solute Carrier Family 29 Member 1² ³
ENT1¹ ² ³ ⁵		Equilibrative Nitrobenzylmercaptopurine Riboside (NBMPR)-Sensitive Nucleoside Transporter²
Equilibrative NBMPR-Sensitive Nucleoside Transporter² ³		Equilibrative Nucleoside Transporter 1²
Equilibrative Nitrobenzylmercaptopurine Riboside-Sensitive Nucleoside Transporter² ³		Solute Carrier Family 29, Member 1²
Nucleoside Transporter, Es-Type² ³

External Ids:	HGNC: 11003¹	Entrez Gene: 2030²	Ensembl: ENSG00000112759⁷	OMIM: 602193⁵	UniProtKB: Q99808³

Export aliases for SLC29A1 gene to outside databases

Previous GC identifers: GC06P044189 GC06P044234 GC06P044295 GC06P043909

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for SLC29A1:

This gene is a member of the equilibrative nucleoside transporter family. The gene encodes a transmembrane glycoprotein

that localizes to the plasma and mitochondrial membranes and mediates the cellular uptake of nucleosides from the

surrounding medium. The protein is categorized as an equilibrative (as opposed to concentrative) transporter that is

sensitive to inhibition by nitrobenzylthioinosine (NBMPR). Nucleoside transporters are required for nucleotide

synthesis in cells that lack de novo nucleoside synthesis pathways, and are also necessary for the uptake of cytotoxic

nucleosides used for cancer and viral chemotherapies. Multiple alternatively spliced variants, encoding the same

protein, have been found for this gene. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: S29A1_HUMAN, Q99808

Function: Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is

sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is

sodium-independent. It has a higher affinity for adenosine. Inhibited by dipyridamole and dilazep (anticancer

chemotherapeutics drugs)

summary for SLC29A1:

Nucleoside transporters are divided into two families; the Na+-dependent solute carrier family 28 (SLC28)

and the equilibrative solute carrier family 29 (SLC29). SLC28 family transporters (CNT1-3) display

subtype-selective expression patterns; CNT1 is localized primarily to epithelial tissue whereas CNT2 and

CNT3 have more widespread distributions. SLC29 family transporters (ENT1-4) are glycosylated proteins,

localized to the plasma and mitochondrial membranes. They are expressed in the heart, brain, mammary gland,

erythrocytes and placenta, and also in fetal liver and spleen. They mediate nucleoside influx and efflux and

exhibit highest affinity for adenosine. CNT and ENT transporters play critical roles in nucleoside salvage

pathways where they mediate the first step of nucleotide biosynthesis. In addition, these transporters work

in concert to terminate adenosine signaling and are vital determinants in the response to a variety of

anticancer and antiviral treatments, as they modulate the entry of these nucleoside analogs into target

tissues.

Gene Wiki entry for SLC29A1 (Equilibrative nucleoside transporter 1)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000006.11 NC_018917.1 NT_007592.15

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the SLC29A1 gene promoter:
STAT1 Sp1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): SLC29A1 promoter sequence

Search SABiosciences Chromatin IP Primers for SLC29A1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC29A1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.1 Ensembl cytogenetic band: 6p21.1 HGNC cytogenetic band: 6p21.1

SLC29A1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC29A1 gene location

GeneLoc information about chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06P044187: view genomic region (about GC identifiers)

Start:	44,187,242 bp from pter	End:	44,201,888 bp from pter
Size:	14,647 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: S29A1_HUMAN, Q99808 (See protein sequence)

Recommended Name: Equilibrative nucleoside transporter 1

Size: 456 amino acids; 50219 Da

Subcellular location: Basolateral cell membrane; Multi-pass membrane protein. Apical cell membrane; Multi-pass membrane

protein. Note=Predominantly localized in the basolateral membrane in polarized MDCK cells

Secondary accessions: B3KQY5 Q5T9W9 Q9UJY2

Explore the universe of human proteins at neXtProt for SLC29A1: NX_Q99808

Post-translational modifications:

Glycosylated¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q99808

SLC29A1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (5 alternative transcripts):

NP_001071642.1 NP_001071645.1 NP_004946.1 NP_001071643.1 NP_001071644.1

ENSEMBL proteins:

ENSP00000392668 ENSP00000360820 ENSP00000360805 ENSP00000360796 ENSP00000360789

ENSP00000360778 ENSP00000360773 ENSP00000319152 ENSP00000377427 ENSP00000377424

Reactome Protein details: Q99808
Human Recombinant Protein Products:

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	OriGene Purified Protein: SLC29A1 OriGene Protein Over-expression Lysate (see all 4): SLC29A1 OriGene Custom Protein Services for SLC29A1
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	Novus Biologicals SLC29A1 Protein Novus Biologicals SLC29A1 Lysates
	Browse Sino Biological Recombinant Proteins
	Browse ProSpec Recombinant Proteins
	Uscn Proteins for SLC29A1

Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005624	membrane fraction	--	--
GO:0005886	plasma membrane	TAS	--
GO:0005887	integral to plasma membrane	TAS	8986748
GO:0016020	membrane	TAS	8986748
GO:0016323	basolateral plasma membrane	IDA	12527552

SLC29A1 for ontologies About GeneDecksing

SLC29A1 Antibody Products:

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	Novus Biologicals SLC29A1 Antibodies
	Abcam antibodies for SLC29A1
	Uscn Antibodies for SLC29A1
	ThermoFisher Antibodies for SLC29A1

Assay Products for SLC29A1:

	Browse Kits and Assays available from EMD Millipore
	OriGene Custom Immunoassay Development Browse OriGene Fluorogenic Cell Assay Kits
	Browse R&D Systems for biochemical assays
	GenScript Custom Assay Services for SLC29A1
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for SLC29A1

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

SLC29A1 for domains About GeneDecksing

1 InterPro domain/family:

IPR002259 Eqnu_transpt

Graphical View of Domain Structure for InterPro Entry Q99808

ProtoNet protein and cluster: Q99808

1 Blocks protein family: IPB002259 Delayed-early response protein/equilibrative nucleoside transporter signature

UniProtKB/Swiss-Prot: S29A1_HUMAN, Q99808

Similarity: Belongs to the SLC29A/ENT transporter (TC 2.A.57) family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: S29A1_HUMAN, Q99808

Function: Mediates both influx and efflux of nucleosides across the membrane (equilibrative transporter). It is

sensitive (ES) to low concentrations of the inhibitor nitrobenzylmercaptopurine riboside (NBMPR) and is

sodium-independent. It has a higher affinity for adenosine. Inhibited by dipyridamole and dilazep (anticancer

chemotherapeutics drugs)

Biophysicochemical properties: Kinetic parameters: KM=0.62 mM for adenosine; Note=Vmax for adenosine uptake is about

the same for SLC29A1 and SLC29A2;

Genatlas biochemistry entry for SLC29A1:

solute carrier family 29,member A1,equilibrative nucleoside transporter,widely distributed

miRNA Products:		OriGene 3'-UTR Clone (see all 5): SLC29A1 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat SLC29A1
		8/9 QIAGEN miScript miRNA Assays for microRNAs that regulate SLC29A1 (see all 9):
		hsa-miR-34b* hsa-miR-29b-1* hsa-miR-146a* hsa-miR-124 hsa-miR-298 hsa-miR-506 hsa-miR-2114* hsa-miR-449c

		SwitchGear 3'UTR luciferase reporter plasmid: SLC29A1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SLC29A1 (see all 7) OriGene shRNA RFP: SLC29A1 OriGene siRNA: SLC29A1
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SLC29A1

Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for SLC29A1

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SLC29A1 (see all 7) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SLC29A1 (see all 5) OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 5): SLC29A1 (NM_001078177)
		Browse Sino Biological Human cDNA Clones
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for SLC29A1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SLC29A1

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for SLC29A1
		Search LifeMap BioReagents cell lines for SLC29A1

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC29A1

Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005337	nucleoside transmembrane transporter activity	IEA	--

SLC29A1 for ontologies About GeneDecksing

1 GenomeRNAi human phenotype for SLC29A1:

Increased gamma-H2AX phosphory

Animal Models:
Mouse knock-out Slc29a1^tm1Msg for SLC29A1
4 MGI mutant phenotypes (inferred from 2 alleles) (MGI details for Slc29a1):

behavior/neurological

growth/size

nervous system

no phenotypic analysis

SLC29A1 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/7 super-pathways (see all 7) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

SLC-mediated transmembrane transport

SLC-mediated transmembrane transport

1.00

Transmembrane transport of small molecules

0.50

Fluoropyrimidine Activity

Fluoropyrimidine Activity

1.00

Fluoropyrimidine Pathway, Pharmacokinetics

0.73

Gemcitabine Pathway, Pharmacodynamics

Gemcitabine Pathway, Pharmacodynamics

1.00

Selected targets of GCR-alpha

Selected targets of GCR-alpha

1.00

Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane

Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane

1.00

Pathway sources
See GeneCards unified pathways
Show all pathways

1 EMD Millipore Pathway for SLC29A1

Selected targets of GCR-alpha

1 BioSystems Pathway for SLC29A1

Fluoropyrimidine Activity

4 Reactome Pathways for SLC29A1

	SLC-mediated transmembrane transport
	Transmembrane transport of small molecules
	Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane
	Transport of vitamins, nucleosides, and related molecules

3 PharmGKB Pathways for SLC29A1

	Fluoropyrimidine Pathway, Pharmacokinetics
	Gemcitabine Pathway, Pharmacodynamics
	Thiopurine Pathway, Pharmacokinetics/Pharmacodynamics

SLC29A1 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for SLC29A1

STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

5/6 Interacting proteins for SLC29A1 (Q99808^{1, 2, 3} ENSP00000360773⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 6)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
STK19	P49842¹^,²^,³, ENSP00000364482⁴	EBI-347907,EBI-347581 MINT-62585 MINT-62759 MINT-62683 I2D: score=5 STRING: ENSP00000364482
CREB3	O43889³	I2D: score=1
RP1	ENSP00000220676⁴	STRING: ENSP00000220676
UBC	ENSP00000344818⁴	STRING: ENSP00000344818
--	ENSP00000391798⁴	STRING: ENSP00000391798

About this table

Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006139	nucleobase-containing compound metabolic process	TAS	8986748
GO:0007595	lactation	IEA	--
GO:0015858	nucleoside transport	IDA	12527552
GO:0015862	uridine transport	IEA	--
GO:0030431	sleep	IEA	--

SLC29A1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

SLC29A1 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Compounds for SLC29A1 available from Tocris Bioscience About this table

Compound	Action	CAS #
Dipyridamole	Adenosine transport inhibitor	[58-32-2]
Cilostazol	PDE3A inhibitor. Also adenosine uptake inhibitor	[73963-72-1]
NBMPR	Equilibrative nucleoside transporter 1 (ENT1) inhibitor	[38048-32-7]
Dilazep dihydrochloride	Adenosine uptake inhibitor	[35898-87-4]

1 HMDB Compound for SLC29A1 About this table

Compound	Synonyms	CAS #	PubMed Ids
Sodium	Sodium (see all 2)	7440-23-5	--

6 DrugBank Compounds for SLC29A1 About this table

Compound	Synonyms	CAS #	Type	Actions	PubMed Ids
Ribavirin	RBV (see all 4)	36791-04-5	transporter	substrate	20096989 20185188
Cytarabine	Ara-C (see all 26)	147-94-4	transporter	substrate	20082300
Fludarabine	FAMP (see all 4)	75607-67-9	transporter	substrate	20082300
Gemcitabine	--	95058-81-4	transporter	substrate	20082300
Pemetrexed	LY231514 (see all 2)	150399-23-8	enzyme	inducer	21336182
Troglitazone	--	97322-87-7	target	inhibitor	15963471

10/29 Novoseek chemical compound relationships for SLC29A1 gene (see all 29) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
nitrobenzylthioinosine	95.3	10	15081020 (2), 8093099 (1), 11085929 (1), 10366666 (1) (see all 8)
5-(saenta-x8)fluorescein	93.7	3	8432200 (2), 9207471 (1)
nucleoside	93.5	269	12724623 (4), 19801629 (4), 8432200 (3), 15102528 (3) (see all 99)
draflazine	90.6	2	18462193 (1), 17379602 (1)
soluflazine	89.6	2	18462193 (1), 17379602 (1)
saenta	87.8	1	11849208 (1)
deoxycytidine	85.9	18	15471562 (2), 16585222 (1), 17224927 (1), 17296311 (1) (see all 16)
gemcitabine	80.4	37	15501974 (2), 16585222 (2), 19318496 (2), 15471562 (2) (see all 28)
dipyridamole	79.9	18	17636949 (3), 18462193 (1), 19748575 (1), 15644498 (1) (see all 10)
uridine	75.2	9	17121826 (2), 10722669 (1), 12416024 (1), 15043160 (1) (see all 6)

Search CenterWatch for drugs/clinical trials and news about SLC29A1 / S29A1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for SLC29A1 gene (5 alternative transcripts):

NM_001078174.1 NM_001078177.1 NM_004955.2 NM_001078175.2 NM_001078176.2

Unigene Cluster for SLC29A1:

Solute carrier family 29 (nucleoside transporters), member 1

Hs.25450 [show with all ESTs]

Unigene Representative Sequence: NM_001078177

11 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000427851 ENST00000371755(uc003owy.1) ENST00000371740(uc003owx.1)

ENST00000371731 ENST00000371724 ENST00000371713 ENST00000371708 ENST00000472176(uc011dvq.1)

ENST00000313248 ENST00000393844(uc021yzw.1 uc011dvp.1 uc003owu.1 uc003owv.1 uc003oww.1)

ENST00000393841(uc003owz.1 uc021yzx.1)

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		SwitchGear 3'UTR luciferase reporter plasmid: SLC29A1 3' UTR sequence

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		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC29A1

Additional cDNA sequence:

AB490708.1 AB490709.1 AF079117.1 AK090491.1 AK090615.1 AK293558.1 AK304285.1 BC001382.2

BC008954.2 BC095398.1 U81375.1

24/29 DOTS entries (see all 29):

DT.100677517 DT.100647849 DT.416615 DT.416616 DT.100677515 DT.92450528 DT.95349688 DT.97847963

DT.92450530 DT.100677507 DT.95358664 DT.100677519 DT.95358661 DT.95358669 DT.100677504 DT.95358681

DT.100852953 DT.95204966 DT.95358670 DT.92450518 DT.95212146 DT.100677512 DT.121317670 DT.121317712

24/419 AceView cDNA sequences (see all 419):

BU849167 BM904389 CR593933 CB961939 H43624 CR619640 BP375132 BC001382

AX746476 BQ218503 BP376093 BQ719761 CR593431 BG253964 BQ083557 BI225991

BM661584 AW051901 AK090615 AI084999 BP365072 AA262891 BC008954 CB960967

GeneLoc Exon Structure

5/32 Alternative Splicing Database (ASD) splice patterns (SP) for SLC29A1 (see all 32) About this scheme

ExUns:	1a	·	1b	·	1c	·	1d	·	1e	·	1f	^	2	^	3	^	4a	·	4b	^	5a	·	5b	·	5c	^	6	^	7a	·	7b	^	8a	·	8b	^	9	^	10	^	11a	·	11b	·	11c	·	11d	·	11e	^	12a	·
SP1:													-				-		-		-		-		-		-		-		-		-		-
SP2:																											-		-				-		-
SP3:													-		-		-		-		-		-		-		-		-		-		-		-
SP4:													-		-		-		-		-		-		-		-		-		-		-		-
SP5:																					-		-		-		-		-		-		-		-

ExUns:	12b	·	12c	·	12d	·	12e	·	12f	·	12g	·	12h	^	13a	·	13b	^	14a	·	14b	^	15	^	16a	·	16b	^	17a	·	17b	^	18a	·	18b	^	19a	·	19b	^	20a	·	20b	·	20c	^	21	^	22a	·	22b	·
SP1:							-		-		-		-		-		-														-		-
SP2:							-		-		-		-		-		-														-		-
SP3:							-		-		-		-		-		-														-		-
SP4:							-		-		-		-		-		-														-		-
SP5:							-		-		-		-		-		-														-		-

ECgene alternative splicing isoforms for SLC29A1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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SLC29A1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCTAAAAAAA

About this image

SLC29A1 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Liver

Liver Lobule

Liver

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 5 LifeMap Cells

Name

Category

PureStem™ endothelial progenitor 30-MV2-12 (Embryonic Progenitor Cell)

Blood, Endothelium

PureStem™ progenitor E68 (Embryonic Progenitor Cell)

PureStem™ epithelial progenitor E164 (Embryonic Progenitor Cell)

Intermediate Mesoderm, Kidney

PureStem™ progenitor U31 (Embryonic Progenitor Cell)

HyStem+TGF?3+GDF5-induced SK11 cells (HyStem+TGF?3+GDF5 in...)

Bone, Cartilage

See SLC29A1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SLC29A1

SOURCE GeneReport for Unigene cluster: Hs.25450

UniProtKB/Swiss-Prot: S29A1_HUMAN, Q99808

Tissue specificity: Expressed in heart, brain, mammary gland, erythrocytes and placenta, and also in fetal liver and

spleen

SABiosciences Expression via Pathway-Focused PCR Array including SLC29A1:

Drug Transporters in human mouse rat

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC29A1 gene from 6/26 species (see all 26) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Details
chicken (Gallus gallus)	Aves	SLC29A1¹	solute carrier family 29 (nucleoside transporters), more	68.31(n) 62.47(a)	421439 XM_419491.3 XP_419491.1
African clawed frog (Xenopus laevis)	Amphibia	MGC68732²	hypothetical protein MGC68732	77.24(n)	BC060420.1
zebrafish (Danio rerio)	Actinopterygii	LOC100331439¹	equilibrative nucleoside transporter 1-like	66.82(n) 68.86(a)	100331439 XM_002667285.2 XP_002667331.2
fruit fly (Drosophila melanogaster)	Insecta	CG11907³ Ent1¹	equilibrative nucleoside transporter, nitrobenzyl-thioinosine-insensitive³ Equilibrative nucleoside transporter 1¹	32(a) (best of 2)³ 46.96(n)¹ 34.62(a)¹	21C2³ 33207¹ NM_134675.4¹ NP_608519.2¹
worm (Caenorhabditis elegans)	Secernentea	K09A9.3³	--	26(a) (best of 2)	X(15636297-15638548) --
baker's yeast (Saccharomyces cerevisiae)	Saccharomycetes	FUN26¹	Fun26p	42.21(n) 26.63(a)	851211 NP_009380.1

ENSEMBL Gene Tree for SLC29A1 (if available)
TreeFam Gene Tree for SLC29A1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for SLC29A1 gene

SLC29A4² SLC29A3² SLC29A2²

2 SIMAP similar genes for SLC29A1 using alignment to 4 protein entries: S29A1_HUMAN (see all proteins):

SLC29A2 SLC29A3

SLC29A1 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 6 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs3734701^1,2	C,F,A,H,	--	44185254(+)	`TGTCCC/TGCCTG`	2	--	us2k¹		17		NS NA WA CSA EA	1141
rs79241016^1,2		--	44185264(+)	`GCTGCT/AGCCTG`	2	--	us2k¹		4		CSA WA NA EA	360
rs115005927^1,2	F,	--	44185299(+)	`TCCTGC/TCCCTG`	2	--	us2k¹		1		WA	118
rs181453173^1,2		--	44185324(+)	`CCGCCA/GCCTGG`	2	--	us2k¹		0	--	--	--	--
rs186545105^1,2		--	44185408(+)	`TGGGGA/TGGCCT`	2	--	us2k¹		0	--	--	--	--
rs140998806^1,2		--	44185425(+)	`TGGACC/TGCCTG`	2	--	us2k¹		0	--	--	--	--
rs111303907^1,2	C,	--	44185448(+)	`AGGTTG/AGGCCC`	2	--	us2k¹		1		NA	2
rs7774103^1,2	C	--	44185522(+)	`GATAAG/GA /T/TCCTGGC`	2	--	us2k¹		0	--	--	--	--
rs57595790^1,2	C,F,	--	44185522(+)	`GATAAT/GCCTGG`	2	--	us2k¹		4		WA NA	242
rs7753792^1,2	C,F,	--	44185523(+)	`ATAATC/ACTGGC`	2	--	us2k¹		4		WA NA	242

HapMap Linkage Disequilibrium report for SLC29A1 (44187242 - 44201888 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for SLC29A1
1 CNV: 36526
Human Gene Mutation Database (HGMD): SLC29A1

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

SLC29A1 for disorders           About GeneDecksing

OMIM gene information: 602193    OMIM disorders: --

20/38 diseases for SLC29A1 (see all 38):    About MalaCards

pre-eclampsia non-hodgkin lymphoma beta thalassemia mantle cell lymphoma

pancreas adenocarcinoma hodgkin's lymphoma inflammatory bowel disease acute lymphoblastic leukemia

gestational diabetes chronic lymphocytic leukemia lymphoblastic leukemia acute myeloid leukemia

lymphocytic leukemia thalassemia myeloid leukemia leukemia

acute leukemia eclampsia hyperglycemia myelodysplastic syndrome

1 disease from the University of Copenhagen DISEASES database for SLC29A1:

Pancreatic cancer

10/14 Novoseek disease relationships for SLC29A1 gene (see all 14) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
pancreatic cancer	59.3	6	16585222 (1), 18378536 (1), 18589402 (1), 18992248 (1) (see all 6)
diabetes gestational	43.8	12	20032083 (4), 16688763 (3), 19193655 (1), 15272035 (1)
leukemia	41.4	2	9207471 (1), 18279955 (1)
adenocarcinoma	27.8	4	15501974 (1), 17390066 (1), 19318496 (1), 19214867 (1)
acute leukemia	23	1	16609362 (1)
pancreatic carcinoma	14.1	1	17695509 (1)
nsclc	12.5	7	15471562 (2), 17658213 (2)
tumors	9.19	1	16585222 (1)
breast cancer	0	3	16965766 (1), 11801546 (1), 12912975 (1)
hyperglycemia	0	1	19193655 (1)

Human Genome Epidemiology (HuGE) Navigator: SLC29A1 (15 documents)

Export disorders for SLC29A1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for SLC29A1 gene, integrated from 9 sources (see all 215):
(articles sorted by number of sources associating them with SLC29A1)

Utopia: connect your pdf to the dynamic
world of online information

Cloning of a human nucleoside transporter implicated in the cellular uptake of adenosine and chemotherapeutic drugs. (PubMed id 8986748)^{1, 2, 3} Griffiths M.... Baldwin S.A. (1997)
Characterization of ribavirin uptake systems in human hepatocytes. (PubMed id 20185188)^{1, 7, 9} Fukuchi Y....Chiba K. (2010)
Optimizing pemetrexed-gemcitabine combination in pati ents with advanced non-small cell lung cancer: a pharmacogenetic approach. (PubMed id 21336182)^{1, 7} De Pas T.M....De Braud F. (2011)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Localization of human equilibrative nucleoside transporters, hENT1 and hENT2, in renal epithelial cells. (PubMed id 12527552)^{1, 2} Mangravite L.M.... Giacomini K.M. (2003)
Comparative genomic analysis of equilibrative nucleoside transporters suggests conserved protein structure despite limited sequence identity. (PubMed id 12384580)^{1, 2} Sankar N.... Coe I.R. (2002)
Human intestinal es nucleoside transporter: molecular characterization and nucleoside inhibitory profiles. (PubMed id 10755314)^{1, 2} Lum P.Y.... Unadkat J.D. (2000)
Assignment of the human equilibrative nucleoside transporter (hENT1) to 6p21.1-p21.2. (PubMed id 9344680)^{1, 3} Coe I.R....Cass C.E. (1997)
Effect of thiazolidinediones on equilibrative nucleoside transporter-1 in human aortic smooth muscle cells. (PubMed id 15963471)^{7, 9} Leung G.P....Tse C.M. (2005)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 2030	HGNC: 11003	AceView: SLC29A1	Ensembl:ENSG00000112759	euGenes: HUgn2030
ECgene: SLC29A1	H-InvDB: SLC29A1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for SLC29A1	Pharmacogenomics, SNPs, Pathways

Intellectual Property for SLC29A1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for SLC29A1 gene:
Search GeneIP for patents involving SLC29A1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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SLC29A1 Gene

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