Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SLC27A1 Gene

Aliases for SLC27A1 Gene

  • Solute Carrier Family 27 Member 1 2 3 4 5
  • Solute Carrier Family 27 (Fatty Acid Transporter), Member 1 2 3
  • Fatty Acid Transport Protein 1 3 4
  • ACSVL5 3 4
  • FATP-1 3 4
  • FATP1 3 4
  • Long-Chain Fatty Acid Transport Protein 1 3
  • EC 6.2.1.- 4
  • EC 6.2.1 56
  • FATP 3

External Ids for SLC27A1 Gene

Previous GeneCards Identifiers for SLC27A1 Gene

  • GC19U990163
  • GC19P017442
  • GC19P017579
  • GC19P017146
  • GC19P017553
  • GC19P017701
  • GC19P017725
  • GC19P018292
  • GC19P018692
  • GC19P019002
  • GC19P019321

Summaries for SLC27A1 Gene

GeneCards Summary for SLC27A1 Gene

SLC27A1 (Solute Carrier Family 27 Member 1) is a Protein Coding gene. Diseases associated with SLC27A1 include Ichthyosis Prematurity Syndrome and Melkersson-Rosenthal Syndrome. Among its related pathways are Metabolism and Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha). Gene Ontology (GO) annotations related to this gene include protein homodimerization activity and long-chain fatty acid-CoA ligase activity. An important paralog of this gene is SLC27A4.

UniProtKB/Swiss-Prot for SLC27A1 Gene

  • Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids (By similarity).

Gene Wiki entry for SLC27A1 Gene

Additional gene information for SLC27A1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC27A1 Gene

Genomics for SLC27A1 Gene

GeneHancer (GH) Regulatory Elements for SLC27A1 Gene

Promoters and enhancers for SLC27A1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I017467 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 561.7 +1.1 1071 4.7 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF766 ZNF207 ZNF143 FOS SLC27A1 CHERP MED26 ENSG00000268087 HAUS8 ENSG00000269578 IQCN GTPBP3 ENSG00000268743 ENSG00000269427
GH19I018086 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12 +620.5 620546 5.9 HDGF PKNOX1 ZNF493 ZFP64 IRF4 ZNF48 TCF12 ZNF121 ZNF766 ZNF213 IL12RB1 ENSG00000268030 UPF1 IQCN GTPBP3 SUGP2 ENSG00000268938 ENSG00000269191 LOC100507551 ELL
GH19I017106 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12 -359.6 -359579 4.4 HDGF ZNF493 ZFP64 SIN3A GLI4 ZNF2 IRF4 ZNF121 GLIS2 ZNF213 CHERP ENSG00000268743 ENSG00000269578 C19orf44 ENSG00000267904 ENSG00000268087 GTPBP3 SIN3B MYO9B SMIM7
GH19I017472 Enhancer 1.2 Ensembl ENCODE dbSUPER 16.2 +4.4 4370 1.7 HDAC1 ATF1 GTF3C2 TCF12 FOS ATF7 SMARCA5 REST SMARCA4 ZBTB33 SLC27A1 NXNL1 PIR43275
GH19I017475 Enhancer 1.2 Ensembl ENCODE dbSUPER 16.2 +7.1 7145 1.7 ELF3 FOXA2 ARID4B DMAP1 THRB ZNF48 SLC30A9 KLF11 MXD4 ELF1 SLC27A1 LOC100507551 PIR43275
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC27A1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SLC27A1 gene promoter:

Genomic Locations for SLC27A1 Gene

Genomic Locations for SLC27A1 Gene
chr19:17,468,769-17,506,168
(GRCh38/hg38)
Size:
37,400 bases
Orientation:
Plus strand
chr19:17,579,578-17,616,977
(GRCh37/hg19)

Genomic View for SLC27A1 Gene

Genes around SLC27A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC27A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC27A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC27A1 Gene

Proteins for SLC27A1 Gene

  • Protein details for SLC27A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PCB7-S27A1_HUMAN
    Recommended name:
    Long-chain fatty acid transport protein 1
    Protein Accession:
    Q6PCB7
    Secondary Accessions:
    • A6NIH2
    • B7Z662

    Protein attributes for SLC27A1 Gene

    Size:
    646 amino acids
    Molecular mass:
    71108 Da
    Quaternary structure:
    • Self-associates. May function as a homodimer (By similarity).
    Miscellaneous:
    • FATP1-mediated fatty acid uptake is associated to paramaters related to insulin resistance, which is associated with disturbed fatty acid metabolism and homeostasis, such as obesity.

    Alternative splice isoforms for SLC27A1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC27A1 Gene

Selected DME Specific Peptides for SLC27A1 Gene

Q6PCB7:
  • RHRVRLAVGNGLRP
  • DPLRRFDGY
  • GDVLVMDELGY
  • YDCLPLYHSAGNI
  • RKKFSASRFWDDC
  • GENVSTTEVE
  • TSGTTGLPKA
  • VHSRYYR
  • EFYGATECNCS
  • EFVGLWLG

Post-translational modifications for SLC27A1 Gene

No Post-translational modifications

Domains & Families for SLC27A1 Gene

Gene Families for SLC27A1 Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins
  • Transporters

Protein Domains for SLC27A1 Gene

Suggested Antigen Peptide Sequences for SLC27A1 Gene

Graphical View of Domain Structure for InterPro Entry

Q6PCB7

UniProtKB/Swiss-Prot:

S27A1_HUMAN :
  • Belongs to the ATP-dependent AMP-binding enzyme family.
Family:
  • Belongs to the ATP-dependent AMP-binding enzyme family.
genes like me logo Genes that share domains with SLC27A1: view

Function for SLC27A1 Gene

Molecular function for SLC27A1 Gene

UniProtKB/Swiss-Prot Function:
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids (By similarity).

Enzyme Numbers (IUBMB) for SLC27A1 Gene

Phenotypes From GWAS Catalog for SLC27A1 Gene

Gene Ontology (GO) - Molecular Function for SLC27A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003824 catalytic activity IEA --
GO:0004467 long-chain fatty acid-CoA ligase activity IEA --
GO:0015245 fatty acid transmembrane transporter activity TAS,IEA --
GO:0016874 ligase activity IEA --
genes like me logo Genes that share ontologies with SLC27A1: view
genes like me logo Genes that share phenotypes with SLC27A1: view

Animal Models for SLC27A1 Gene

MGI Knock Outs for SLC27A1:

Animal Model Products

CRISPR Products

miRNA for SLC27A1 Gene

miRTarBase miRNAs that target SLC27A1

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SLC27A1 Gene

Localization for SLC27A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC27A1 Gene

Cell membrane; Single-pass membrane protein. Endomembrane system; Single-pass membrane protein. Cytoplasm. Note=Plasma membrane and intracellular membranes, at least in adipocytes. Predominantly cytoplasmic in myocytes (By similarity). {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC27A1 gene
Compartment Confidence
plasma membrane 5
endoplasmic reticulum 3
extracellular 2
mitochondrion 2
peroxisome 2
cytosol 1
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Plasma membrane (3)
  • Cytosol (1)
  • Mitochondria (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SLC27A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005739 mitochondrion IDA --
GO:0005783 endoplasmic reticulum IEA --
GO:0005829 cytosol IDA --
GO:0005886 plasma membrane TAS --
genes like me logo Genes that share ontologies with SLC27A1: view

Pathways & Interactions for SLC27A1 Gene

genes like me logo Genes that share pathways with SLC27A1: view

Gene Ontology (GO) - Biological Process for SLC27A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001579 medium-chain fatty acid transport IEA --
GO:0001676 long-chain fatty acid metabolic process IEA --
GO:0006629 lipid metabolic process IEA --
GO:0006631 fatty acid metabolic process IEA --
GO:0006646 phosphatidylethanolamine biosynthetic process IMP 19523918
genes like me logo Genes that share ontologies with SLC27A1: view

No data available for SIGNOR curated interactions for SLC27A1 Gene

Drugs & Compounds for SLC27A1 Gene

(14) Drugs for SLC27A1 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Palmitic Acid Approved, Experimental Pharma Full agonist, Agonist 23
Stearic acid Approved, Experimental Pharma 0
Hexanoyl-CoA Experimental Pharma 0
Myristic acid Experimental Pharma 0
Propanoyl-CoA Experimental Pharma 0

(43) Additional Compounds for SLC27A1 Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
(2E)-Decenoyl-CoA
  • (E)-S-2-decenoate
  • (E)-S-2-decenoate CoA
  • (E)-S-2-decenoate Coenzyme A
  • (E)-S-2-decenoic acid
  • 2-trans-Decenoyl-CoA
10018-95-8
(2E)-Dodecenoyl-CoA
  • (2E)-Dodec-2-enoyl-CoA
  • (2E)-Dodec-2-enoyl-Coenzyme A
  • 2-trans-Dodecenoyl-CoA
  • 2-trans-Dodecenoyl-Coenzyme A
1066-12-2
(2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-Coenzyme A
  • trans-2-Hexadecenoyl-CoA
  • trans-2-Hexadecenoyl-Coenzyme A
4460-95-1
(2E)-Octenoyl-CoA
  • (E)-S-2-octenoate
  • (E)-S-2-octenoate CoA
  • (E)-S-2-octenoate Coenzyme A
  • (E)-S-2-octenoic acid
  • 2,3-trans-Octenoyl coenzyme A
10018-94-7
(2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-Coenzyme A
  • Trans-tetra-dec-2-enoyl-CoA
  • Trans-tetra-dec-2-enoyl-CoA.
  • Trans-tetra-dec-2-enoyl-Coenzyme A
38795-33-4
genes like me logo Genes that share compounds with SLC27A1: view

Transcripts for SLC27A1 Gene

Unigene Clusters for SLC27A1 Gene

Solute carrier family 27 (fatty acid transporter), member 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC27A1 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15
SP1:
SP2:
SP3: - -
SP4: -
SP5: - -
SP6:
SP7:

Relevant External Links for SLC27A1 Gene

GeneLoc Exon Structure for
SLC27A1
ECgene alternative splicing isoforms for
SLC27A1

Expression for SLC27A1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC27A1 Gene

Protein differential expression in normal tissues from HIPED for SLC27A1 Gene

This gene is overexpressed in Nasal epithelium (34.0) and Testis (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SLC27A1 Gene



Protein tissue co-expression partners for SLC27A1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SLC27A1 Gene:

SLC27A1

SOURCE GeneReport for Unigene cluster for SLC27A1 Gene:

Hs.363138

mRNA Expression by UniProt/SwissProt for SLC27A1 Gene:

Q6PCB7-S27A1_HUMAN
Tissue specificity: Highest levels of expression are detected in muscle and adipose tissue small, intermediate levels in small intestine, and barely detectable in liver.

Evidence on tissue expression from TISSUES for SLC27A1 Gene

  • Nervous system(4.4)
  • Muscle(2.7)
  • Heart(2.3)
genes like me logo Genes that share expression patterns with SLC27A1: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC27A1 Gene

Orthologs for SLC27A1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC27A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC27A1 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC27A1 33 34
  • 89.42 (n)
cow
(Bos Taurus)
Mammalia SLC27A1 33 34
  • 88.96 (n)
mouse
(Mus musculus)
Mammalia Slc27a1 33 16 34
  • 84.52 (n)
rat
(Rattus norvegicus)
Mammalia Slc27a1 33
  • 84.06 (n)
oppossum
(Monodelphis domestica)
Mammalia SLC27A1 34
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SLC27A1 34
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC27A1 33 34
  • 71.93 (n)
lizard
(Anolis carolinensis)
Reptilia SLC27A1 34
  • 71 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii slc27a1a 33 34
  • 64.81 (n)
slc27a1b 34
  • 63 (a)
OneToMany
wufc10e12 33
fruit fly
(Drosophila melanogaster)
Insecta CG30194 34
  • 42 (a)
ManyToMany
Fatp 34
  • 40 (a)
ManyToMany
CG3394 34
  • 38 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea acs-22 34
  • 40 (a)
ManyToMany
acs-20 34
  • 38 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes FAT1 34
  • 28 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9398 34
  • 42 (a)
OneToMany
Species where no ortholog for SLC27A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for SLC27A1 Gene

ENSEMBL:
Gene Tree for SLC27A1 (if available)
TreeFam:
Gene Tree for SLC27A1 (if available)

Paralogs for SLC27A1 Gene

Paralogs for SLC27A1 Gene

(6) SIMAP similar genes for SLC27A1 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with SLC27A1: view

Variants for SLC27A1 Gene

Sequence variations from dbSNP and Humsavar for SLC27A1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000123502 -- 17,506,308(+) G/C downstream_transcript_variant
rs1000266265 -- 17,506,629(+) G/A downstream_transcript_variant
rs1000314908 -- 17,491,637(+) C/T intron_variant
rs1000319804 -- 17,472,127(+) G/A intron_variant
rs1000397305 -- 17,472,289(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC27A1 Gene

Variant ID Type Subtype PubMed ID
esv2677036 CNV deletion 23128226
esv3643820 CNV loss 21293372
esv3643821 CNV loss 21293372
nsv833768 CNV loss 17160897

Variation tolerance for SLC27A1 Gene

Residual Variation Intolerance Score: 12.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.13; 38.78% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SLC27A1 Gene

Human Gene Mutation Database (HGMD)
SLC27A1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC27A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC27A1 Gene

Disorders for SLC27A1 Gene

MalaCards: The human disease database

(4) MalaCards diseases for SLC27A1 Gene - From: HGMD, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SLC27A1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with SLC27A1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC27A1 Gene

Publications for SLC27A1 Gene

  1. FATP1 channels exogenous FA into 1,2,3-triacyl-sn-glycerol and down-regulates sphingomyelin and cholesterol metabolism in growing 293 cells. (PMID: 12235169) Hatch GM … Bernlohr DA (Journal of lipid research 2002) 3 4 22 25 58
  2. The human fatty acid transport protein-1 (SLC27A1; FATP-1) cDNA and gene: organization, chromosomal localization, and expression. (PMID: 10873384) Martin G … Auwerx J (Genomics 2000) 2 3 4 22 58
  3. Lack of association between certain candidate gene polymorphisms and the metabolic syndrome. (PMID: 15978856) Meirhaeghe A … Dallongeville J (Molecular genetics and metabolism 2005) 3 22 44 58
  4. A common polymorphism in the fatty acid transport protein-1 gene associated with elevated post-prandial lipaemia and alterations in LDL particle size distribution. (PMID: 12818409) Gertow K … Fisher RM (Atherosclerosis 2003) 3 22 44 58
  5. Identification of type 2 diabetes-associated combination of SNPs using support vector machine. (PMID: 20416077) Ban HJ … Park KJ (BMC genetics 2010) 3 44 58

Products for SLC27A1 Gene

Sources for SLC27A1 Gene

Content
Loading form....