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Aliases for SLC26A4-AS1 Gene

Subcategory (RNA class) for SLC26A4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC26A4-AS1 Gene

  • SLC26A4 Antisense RNA 1 2 3 5
  • SLC26A4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC26A4-AS1 Gene

Previous GeneCards Identifiers for SLC26A4-AS1 Gene

  • GC07M107296

Summaries for SLC26A4-AS1 Gene

GeneCards Summary for SLC26A4-AS1 Gene

SLC26A4-AS1 (SLC26A4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC26A4-AS1 Gene

Genomics for SLC26A4-AS1 Gene

Regulatory Elements for SLC26A4-AS1 Gene

Enhancers for SLC26A4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F107697 0.9 ENCODE 12.2 -35.7 -35720 0.2 BHLHE40 ZMYM3 SLC26A4 SLC26A4-AS1 ENSG00000238832 PIR61394
GH07F107693 0.8 Ensembl ENCODE 12.2 -32.3 -32323 1.1 HLF CEBPB LOC101927974 SLC26A4 SLC26A4-AS1 ENSG00000238832 PIR61394
GH07F107694 0.5 Ensembl 11.9 -31.5 -31450 0.4 ZNF512 LOC101927974 SLC26A4 SLC26A4-AS1 ENSG00000238832 PIR61394
GH07F107628 1 ENCODE 11.8 +33.3 33301 0.2 SPI1 SLC26A4 SLC26A4-AS1 ENSG00000238832 GC07P107629 GC07P107630
GH07F107622 1.2 Ensembl ENCODE 11.7 +39.5 39481 1.2 SCRT2 ETV1 IKZF1 CEBPB ZNF24 COG5 SLC26A4 SLC26A4-AS1 GC07M107613 WBP1LP2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SLC26A4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SLC26A4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001895108 351 801 KLF17 ARID4B SIN3A ZNF2 RAD21 ZNF121 GLIS2 SCRT2 ZNF263 REST

Genomic Location for SLC26A4-AS1 Gene

Chromosome:
7
Start:
107,653,968 bp from pter
End:
107,662,151 bp from pter
Size:
8,184 bases
Orientation:
Minus strand

Genomic View for SLC26A4-AS1 Gene

Genes around SLC26A4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC26A4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC26A4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC26A4-AS1 Gene

Proteins for SLC26A4-AS1 Gene

Post-translational modifications for SLC26A4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC26A4-AS1 Gene

Domains & Families for SLC26A4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC26A4-AS1 Gene

Function for SLC26A4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC26A4-AS1 Gene

Localization for SLC26A4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC26A4-AS1 Gene

Pathways & Interactions for SLC26A4-AS1 Gene

SuperPathways for SLC26A4-AS1 Gene

No Data Available

Interacting Proteins for SLC26A4-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC26A4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC26A4-AS1 Gene

Transcripts for SLC26A4-AS1 Gene

mRNA/cDNA for SLC26A4-AS1 Gene

(6) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC26A4-AS1 Gene

SLC26A4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC26A4-AS1 Gene

No ASD Table

Relevant External Links for SLC26A4-AS1 Gene

GeneLoc Exon Structure for
SLC26A4-AS1
ECgene alternative splicing isoforms for
SLC26A4-AS1

Expression for SLC26A4-AS1 Gene

mRNA expression in normal human tissues for SLC26A4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC26A4-AS1 Gene

This gene is overexpressed in Thyroid (x20.5), Brain - Anterior cingulate cortex (BA24) (x8.9), Brain - Frontal Cortex (BA9) (x6.8), and Brain - Cortex (x5.0).

SOURCE GeneReport for Unigene cluster for SLC26A4-AS1 Gene:

Hs.512611
genes like me logo Genes that share expression patterns with SLC26A4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC26A4-AS1 Gene

Orthologs for SLC26A4-AS1 Gene

Evolution for SLC26A4-AS1 Gene

ENSEMBL:
Gene Tree for SLC26A4-AS1 (if available)
TreeFam:
Gene Tree for SLC26A4-AS1 (if available)

No data available for Orthologs for SLC26A4-AS1 Gene

Paralogs for SLC26A4-AS1 Gene

No data available for Paralogs for SLC26A4-AS1 Gene

Variants for SLC26A4-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC26A4-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs111033205 Pathogenic 107,661,726(+) ACAGC(C/G/T)AGCTC nc-transcript-variant, reference, missense, stop-gained
rs111033241 Pathogenic 107,663,425(+) GTGGC(-/CACGC)TGCAA upstream-variant-2KB, reference, frameshift-variant
rs111033302 Pathogenic 107,661,643(+) GGTCA(C/G/T)GGCAG nc-transcript-variant, reference, missense
rs397516411 Pathogenic 107,661,637(+) CTCGC(A/G)GGTCA nc-transcript-variant, upstream-variant-2KB, splice-acceptor-variant
rs397516420 Pathogenic 107,661,807(+) GCAGG(C/T)AGCGG upstream-variant-2KB, splice-donor-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC26A4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3614462 CNV gain 21293372

Relevant External Links for SLC26A4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC26A4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC26A4-AS1 Gene

Disorders for SLC26A4-AS1 Gene

Relevant External Links for SLC26A4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC26A4-AS1

No disorders were found for SLC26A4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC26A4-AS1 Gene

Publications for SLC26A4-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for SLC26A4-AS1 Gene

Sources for SLC26A4-AS1 Gene

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