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Aliases for SLC26A4-AS1 Gene

Subcategory (RNA class) for SLC26A4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC26A4-AS1 Gene

  • SLC26A4 Antisense RNA 1 2 3 5
  • SLC26A4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC26A4-AS1 Gene

Previous GeneCards Identifiers for SLC26A4-AS1 Gene

  • GC07M107296

Summaries for SLC26A4-AS1 Gene

GeneCards Summary for SLC26A4-AS1 Gene

SLC26A4-AS1 (SLC26A4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SLC26A4-AS1 include Retinitis Pigmentosa 11.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC26A4-AS1 Gene

Genomics for SLC26A4-AS1 Gene

Regulatory Elements for SLC26A4-AS1 Gene

Enhancers for SLC26A4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G107559 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +99.6 99560 6.8 HDGF PKNOX1 MLX CREB3L1 ARNT AGO1 ARID4B SIN3A FEZF1 DMAP1 COG5 ENSG00000238832 SLC26A4 SLC26A4-AS1 HBP1 DUS4L GC07M107524
GH07G107742 1.4 ENCODE dbSUPER 10.7 -82.3 -82349 4.8 CREB3L1 DMAP1 YY1 ZNF143 SP3 TBX21 MEF2D ZNF585B GLIS1 NBN HBP1 LOC101927974 RPL7P32 CBLL1 SLC26A4 SLC26A4-AS1 COG5 DUS4L ENSG00000272072
GH07G107638 1 Ensembl ENCODE 11.6 +23.4 23388 0.9 PKNOX1 MXI1 TBL1XR1 ASH2L BMI1 ZBTB40 RELA RCOR1 RELB IKZF2 COG5 SLC26A4 SLC26A4-AS1 ENSG00000238832 GC07M107643 GC07P107630
GH07G107594 1.1 Ensembl ENCODE 10.5 +66.2 66183 3.7 PKNOX1 FEZF1 RFX5 GATA2 ZNF366 ZSCAN5C FOS CEBPB OVOL3 ZEB2 COG5 SLC26A4 SLC26A4-AS1 DUS4L PIR46022 ENSG00000238832
GH07G107075 1.9 FANTOM5 Ensembl ENCODE dbSUPER 5.4 +583.9 583913 5.5 HDGF PKNOX1 CREB3L1 ARNT SIN3A ZNF766 CBX5 FOS ZNF263 JUNB COG5 SLC26A4-AS1 LOC101927974 GC07M107108 PRKAR2B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC26A4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC26A4-AS1 Gene

Chromosome:
7
Start:
107,653,968 bp from pter
End:
107,662,151 bp from pter
Size:
8,184 bases
Orientation:
Minus strand

Genomic View for SLC26A4-AS1 Gene

Genes around SLC26A4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC26A4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC26A4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC26A4-AS1 Gene

Proteins for SLC26A4-AS1 Gene

Post-translational modifications for SLC26A4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC26A4-AS1 Gene

Domains & Families for SLC26A4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC26A4-AS1 Gene

Function for SLC26A4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC26A4-AS1 Gene

Localization for SLC26A4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC26A4-AS1 Gene

Pathways & Interactions for SLC26A4-AS1 Gene

SuperPathways for SLC26A4-AS1 Gene

No Data Available

Interacting Proteins for SLC26A4-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC26A4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC26A4-AS1 Gene

Drugs & Compounds for SLC26A4-AS1 Gene

No Compound Related Data Available

Transcripts for SLC26A4-AS1 Gene

mRNA/cDNA for SLC26A4-AS1 Gene

(6) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC26A4-AS1 Gene

SLC26A4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC26A4-AS1 Gene

No ASD Table

Relevant External Links for SLC26A4-AS1 Gene

GeneLoc Exon Structure for
SLC26A4-AS1
ECgene alternative splicing isoforms for
SLC26A4-AS1

Expression for SLC26A4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC26A4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC26A4-AS1 Gene

This gene is overexpressed in Thyroid (x20.5), Brain - Anterior cingulate cortex (BA24) (x8.9), Brain - Frontal Cortex (BA9) (x6.8), and Brain - Cortex (x5.0).

SOURCE GeneReport for Unigene cluster for SLC26A4-AS1 Gene:

Hs.512611
genes like me logo Genes that share expression patterns with SLC26A4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC26A4-AS1 Gene

Orthologs for SLC26A4-AS1 Gene

Evolution for SLC26A4-AS1 Gene

ENSEMBL:
Gene Tree for SLC26A4-AS1 (if available)
TreeFam:
Gene Tree for SLC26A4-AS1 (if available)

No data available for Orthologs for SLC26A4-AS1 Gene

Paralogs for SLC26A4-AS1 Gene

No data available for Paralogs for SLC26A4-AS1 Gene

Variants for SLC26A4-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC26A4-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1057516658 Pathogenic 107,663,380(+) GAATG(A/G)CTGCT upstream-variant-2KB, reference, stop-gained
rs1057516953 Pathogenic 107,663,412(+) TAGTA(C/T)TGGGC upstream-variant-2KB, reference, missense
rs111033205 Pathogenic 107,661,726(+) ACAGC(C/G/T)AGCTC nc-transcript-variant, reference, missense
rs111033241 Pathogenic 107,663,425(+) GTGGC(-/CACGC)TGCAA upstream-variant-2KB, reference, frameshift-variant
rs111033302 Pathogenic 107,661,643(+) GGTCA(C/G/T)GGCAG nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SLC26A4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3614462 CNV gain 21293372

Relevant External Links for SLC26A4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC26A4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC26A4-AS1 Gene

Disorders for SLC26A4-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SLC26A4-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SLC26A4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC26A4-AS1
genes like me logo Genes that share disorders with SLC26A4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC26A4-AS1 Gene

Publications for SLC26A4-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for SLC26A4-AS1 Gene

Sources for SLC26A4-AS1 Gene

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