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Aliases for SLC25A53 Gene

Aliases for SLC25A53 Gene

  • Solute Carrier Family 25 Member 53 2 3 5
  • Mitochondrial Carrier Triple Repeat Protein 6 3 4
  • Solute Carrier Family 25, Member 53 2 3
  • MCART6 3 4
  • Mitochondrial Carrier Triple Repeat 6 2

External Ids for SLC25A53 Gene

Previous HGNC Symbols for SLC25A53 Gene

  • MCART6

Previous GeneCards Identifiers for SLC25A53 Gene

  • GC0XM103344

Summaries for SLC25A53 Gene

GeneCards Summary for SLC25A53 Gene

SLC25A53 (Solute Carrier Family 25 Member 53) is a Protein Coding gene. An important paralog of this gene is SLC25A52.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC25A53 Gene

Genomics for SLC25A53 Gene

Regulatory Elements for SLC25A53 Gene

Promoters for SLC25A53 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SLC25A53 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC25A53 Gene

Chromosome:
X
Start:
104,099,214 bp from pter
End:
104,157,027 bp from pter
Size:
57,814 bases
Orientation:
Minus strand

Genomic View for SLC25A53 Gene

Genes around SLC25A53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A53 Gene

Proteins for SLC25A53 Gene

  • Protein details for SLC25A53 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5H9E4-S2553_HUMAN
    Recommended name:
    Solute carrier family 25 member 53
    Protein Accession:
    Q5H9E4
    Secondary Accessions:
    • B2RTT9

    Protein attributes for SLC25A53 Gene

    Size:
    307 amino acids
    Molecular mass:
    34481 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SLC25A53 Gene

Proteomics data for SLC25A53 Gene at MOPED

Post-translational modifications for SLC25A53 Gene

No Post-translational modifications

Other Protein References for SLC25A53 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SLC25A53 Gene

Domains & Families for SLC25A53 Gene

Gene Families for SLC25A53 Gene

Protein Domains for SLC25A53 Gene

Suggested Antigen Peptide Sequences for SLC25A53 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5H9E4

UniProtKB/Swiss-Prot:

S2553_HUMAN :
  • Belongs to the mitochondrial carrier (TC 2.A.29) family.
  • Contains 3 Solcar repeats.
Family:
  • Belongs to the mitochondrial carrier (TC 2.A.29) family.
Similarity:
  • Contains 3 Solcar repeats.
genes like me logo Genes that share domains with SLC25A53: view

Function for SLC25A53 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A53 Gene

Localization for SLC25A53 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC25A53 Gene

Mitochondrion inner membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC25A53 Gene COMPARTMENTS Subcellular localization image for SLC25A53 gene
Compartment Confidence
mitochondrion 4
peroxisome 2
cytosol 1
extracellular 1
nucleus 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for SLC25A53 Gene

Pathways & Interactions for SLC25A53 Gene

SuperPathways for SLC25A53 Gene

No Data Available

Interacting Proteins for SLC25A53 Gene

Gene Ontology (GO) - Biological Process for SLC25A53 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC25A53 Gene

Drugs & Compounds for SLC25A53 Gene

No Compound Related Data Available

Transcripts for SLC25A53 Gene

mRNA/cDNA for SLC25A53 Gene

(4) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC25A53 Gene

Solute carrier family 25, member 53:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A53 Gene

No ASD Table

Relevant External Links for SLC25A53 Gene

GeneLoc Exon Structure for
SLC25A53
ECgene alternative splicing isoforms for
SLC25A53

Expression for SLC25A53 Gene

mRNA expression in normal human tissues for SLC25A53 Gene

Protein differential expression in normal tissues from HIPED for SLC25A53 Gene

This gene is overexpressed in CD8 Tcells (56.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SLC25A53 Gene



SOURCE GeneReport for Unigene cluster for SLC25A53 Gene Hs.660022

genes like me logo Genes that share expression patterns with SLC25A53: view

Protein tissue co-expression partners for SLC25A53 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SLC25A53 Gene

Orthologs for SLC25A53 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SLC25A53 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MCART6 35
  • 90.27 (n)
  • 91.15 (a)
dog
(Canis familiaris)
Mammalia SLC25A53 35
  • 92.79 (n)
  • 95.41 (a)
mouse
(Mus musculus)
Mammalia Slc25a53 35
  • 86.95 (n)
  • 89.47 (a)
Slc25a53 16
rat
(Rattus norvegicus)
Mammalia Mcart1l 35
  • 87.65 (n)
  • 92.13 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100489481 35
  • 57.72 (n)
  • 57.35 (a)
Species with no ortholog for SLC25A53:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SLC25A53 Gene

ENSEMBL:
Gene Tree for SLC25A53 (if available)
TreeFam:
Gene Tree for SLC25A53 (if available)

Paralogs for SLC25A53 Gene

Paralogs for SLC25A53 Gene

(2) SIMAP similar genes for SLC25A53 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SLC25A53: view

Variants for SLC25A53 Gene

Sequence variations from dbSNP and Humsavar for SLC25A53 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs178120 -- 104,101,362(-) gaggg(A/G)tggaa downstream-variant-500B, utr-variant-3-prime
rs178121 -- 104,101,420(-) aaggc(A/G)ccatt downstream-variant-500B, utr-variant-3-prime
rs178124 -- 104,104,115(-) CACAG(C/T)TTCAG utr-variant-3-prime
rs733131 -- 104,130,345(+) TAATG(G/T)GTATG intron-variant
rs733132 -- 104,130,456(+) TCAGT(C/G)AAACA intron-variant

Variation tolerance for SLC25A53 Gene

Residual Variation Intolerance Score: 66% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.83; 17.43% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SLC25A53 Gene

HapMap Linkage Disequilibrium report
SLC25A53

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SLC25A53 Gene

Disorders for SLC25A53 Gene

Relevant External Links for SLC25A53

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC25A53

No disorders were found for SLC25A53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A53 Gene

Publications for SLC25A53 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4 67
  2. The mitochondrial transporter family SLC25: identification, properties and physiopathology. (PMID: 23266187) Palmieri F. (Mol. Aspects Med. 2013) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SLC25A53 Gene

Sources for SLC25A53 Gene

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