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Aliases for SLC25A52 Gene

Aliases for SLC25A52 Gene

  • Solute Carrier Family 25 Member 52 2 3 5
  • Mitochondrial Carrier Triple Repeat Protein 2 3 4
  • Mitochondrial Carrier Triple Repeat 2 2 3
  • MCART2 3 4
  • Solute Carrier Family 25, Member 52 2

External Ids for SLC25A52 Gene

Previous HGNC Symbols for SLC25A52 Gene

  • MCART2

Previous GeneCards Identifiers for SLC25A52 Gene

  • GC18M029340

Summaries for SLC25A52 Gene

Entrez Gene Summary for SLC25A52 Gene

  • This gene is similar to the mitochondrial carrier triple repeat 1 gene on chromosome 9. The gene is intronless and may be an evolving pseudogene; however, it is transcribed and it contains a full-length coding region so it is currently classified as a protein-coding locus. [provided by RefSeq, Jul 2008]

GeneCards Summary for SLC25A52 Gene

SLC25A52 (Solute Carrier Family 25 Member 52) is a Protein Coding gene. An important paralog of this gene is SLC25A51.

Additional gene information for SLC25A52 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC25A52 Gene

Genomics for SLC25A52 Gene

GeneHancer (GH) Regulatory Elements for SLC25A52 Gene

Promoters and enhancers for SLC25A52 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I031760 Promoter 0.7 EPDnew 550.8 +0.0 2 0.1 ATF1 NRF1 GC18M031760 SLC25A52
GH18I031941 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 5.6 -182.3 -182317 3.4 PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ENSG00000263823 TRAPPC8 ENSG00000263393 HNRNPA1P7 ENSG00000263924 SLC25A52 GC18P031876
GH18I031581 Enhancer 0.9 Ensembl ENCODE 9.5 +179.0 179007 0.7 FOXA2 RXRA HLF MAX CEBPG REST RAD21 FOXA1 NR2F2 YY1 B4GALT6 SLC25A52 TTR DSG2-AS1 GC18M031541
GH18I031565 Enhancer 0.8 ENCODE 10.4 +194.3 194280 1.8 ELF3 FOXA2 DMAP1 THRB RAD21 RARA CREM RXRA MXD4 REST TTR B4GALT6 SLC25A52 TRAPPC8 DSG2 DSG2-AS1 GC18M031541
GH18I031821 Enhancer 1.1 Ensembl ENCODE 6.8 -61.0 -61009 0.8 ATF1 ARNT TCF12 ZNF766 GATA2 ATF7 CAVIN1 NCOA1 ZNF592 MBD2 ENSG00000263393 ENSG00000263924 HNRNPA1P7 RNU6-1050P SLC25A52
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC25A52 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC25A52 Gene

Genomic Locations for SLC25A52 Gene
chr18:31,759,562-31,760,880
(GRCh38/hg38)
Size:
1,319 bases
Orientation:
Minus strand
chr18:29,339,525-29,340,843
(GRCh37/hg19)

Genomic View for SLC25A52 Gene

Genes around SLC25A52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A52 Gene

Proteins for SLC25A52 Gene

  • Protein details for SLC25A52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3SY17-S2552_HUMAN
    Recommended name:
    Solute carrier family 25 member 52
    Protein Accession:
    Q3SY17

    Protein attributes for SLC25A52 Gene

    Size:
    297 amino acids
    Molecular mass:
    33721 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SLC25A52 Gene

Post-translational modifications for SLC25A52 Gene

No Post-translational modifications

Other Protein References for SLC25A52 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SLC25A52 Gene

Domains & Families for SLC25A52 Gene

Gene Families for SLC25A52 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for SLC25A52 Gene

Suggested Antigen Peptide Sequences for SLC25A52 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q3SY17

UniProtKB/Swiss-Prot:

S2552_HUMAN :
  • Belongs to the mitochondrial carrier (TC 2.A.29) family.
Family:
  • Belongs to the mitochondrial carrier (TC 2.A.29) family.
genes like me logo Genes that share domains with SLC25A52: view

Function for SLC25A52 Gene

Phenotypes From GWAS Catalog for SLC25A52 Gene

Gene Ontology (GO) - Molecular Function for SLC25A52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0022857 transmembrane transporter activity IBA --
genes like me logo Genes that share ontologies with SLC25A52: view
genes like me logo Genes that share phenotypes with SLC25A52: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A52 Gene

Localization for SLC25A52 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC25A52 Gene

Mitochondrion inner membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC25A52 gene
Compartment Confidence
mitochondrion 4
peroxisome 3
cytosol 2
nucleus 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for SLC25A52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005743 mitochondrial inner membrane IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA,IEA --
genes like me logo Genes that share ontologies with SLC25A52: view

Pathways & Interactions for SLC25A52 Gene

SuperPathways for SLC25A52 Gene

No Data Available

Interacting Proteins for SLC25A52 Gene

Selected Interacting proteins: Q3SY17-S2552_HUMAN for SLC25A52 Gene via IID

Symbol External ID(s) Details
BCL2L12
SLC39A4

Gene Ontology (GO) - Biological Process for SLC25A52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006839 mitochondrial transport IBA --
GO:0055085 transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC25A52: view

No data available for Pathways by source and SIGNOR curated interactions for SLC25A52 Gene

Drugs & Compounds for SLC25A52 Gene

No Compound Related Data Available

Transcripts for SLC25A52 Gene

mRNA/cDNA for SLC25A52 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC25A52 Gene

Solute carrier family 25, member 52:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A52 Gene

No ASD Table

Relevant External Links for SLC25A52 Gene

GeneLoc Exon Structure for
SLC25A52
ECgene alternative splicing isoforms for
SLC25A52

Expression for SLC25A52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC25A52 Gene

mRNA differential expression in normal tissues according to GTEx for SLC25A52 Gene

This gene is overexpressed in Testis (x34.4).

Protein differential expression in normal tissues from HIPED for SLC25A52 Gene

This gene is overexpressed in Fetal Brain (17.0), Heart (12.7), Frontal cortex (11.6), Placenta (10.2), CD4 Tcells (9.5), and CD8 Tcells (8.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SLC25A52 Gene



Protein tissue co-expression partners for SLC25A52 Gene

NURSA nuclear receptor signaling pathways regulating expression of SLC25A52 Gene:

SLC25A52

SOURCE GeneReport for Unigene cluster for SLC25A52 Gene:

Hs.567708
genes like me logo Genes that share expression patterns with SLC25A52: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC25A52 Gene

Orthologs for SLC25A52 Gene

This gene was present in the common ancestor of animals.

Orthologs for SLC25A52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC25A52 33 34
  • 98.7 (n)
dog
(Canis familiaris)
Mammalia -- 34
  • 93 (a)
OneToMany
cow
(Bos Taurus)
Mammalia MCART1 34
  • 91 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Slc25a51 34
  • 85 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 76 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 34
  • 68 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 72 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii zgc:73228 33 34
  • 62.53 (n)
BX088718.1 34
  • 54 (a)
ManyToMany
CU638740.1 34
  • 54 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG7943 34
  • 39 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea T20D3.5 34
  • 40 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 50 (a)
OneToMany
Species where no ortholog for SLC25A52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for SLC25A52 Gene

ENSEMBL:
Gene Tree for SLC25A52 (if available)
TreeFam:
Gene Tree for SLC25A52 (if available)

Paralogs for SLC25A52 Gene

Paralogs for SLC25A52 Gene

(2) SIMAP similar genes for SLC25A52 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SLC25A52: view

Variants for SLC25A52 Gene

Sequence variations from dbSNP and Humsavar for SLC25A52 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1002214733 -- 31,759,561(-) C/A/G downstream_transcript_variant
rs1004932207 -- 31,760,863(-) G/A 5_prime_UTR_variant
rs1006442289 -- 31,761,084(-) A/G upstream_transcript_variant
rs1006848866 -- 31,759,318(-) G/A downstream_transcript_variant
rs1010909906 -- 31,760,291(-) G/T coding_sequence_variant, missense_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC25A52 Gene

Variant ID Type Subtype PubMed ID
esv3893086 CNV gain 25118596
nsv1057229 CNV gain 25217958
nsv960273 CNV duplication 23825009

Variation tolerance for SLC25A52 Gene

Residual Variation Intolerance Score: 94.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.19; 52.01% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SLC25A52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC25A52 Gene

Disorders for SLC25A52 Gene

Additional Disease Information for SLC25A52

No disorders were found for SLC25A52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A52 Gene

Publications for SLC25A52 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58
  3. The mitochondrial transporter family SLC25: identification, properties and physiopathology. (PMID: 23266187) Palmieri F (Molecular aspects of medicine 2013) 3 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  5. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C … Lander ES (Nature 2005) 4 58

Products for SLC25A52 Gene

Sources for SLC25A52 Gene

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