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Aliases for SLC25A5-AS1 Gene

Subcategory (RNA class) for SLC25A5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SLC25A5-AS1 Gene

  • SLC25A5 Antisense RNA 1 2 3 5
  • SLC25A5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC25A5-AS1 Gene

ORGUL Members for SLC25A5-AS1 Gene

Previous GeneCards Identifiers for SLC25A5-AS1 Gene

  • GC0XM118601

Summaries for SLC25A5-AS1 Gene

GeneCards Summary for SLC25A5-AS1 Gene

SLC25A5-AS1 (SLC25A5 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for SLC25A5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC25A5-AS1 Gene

Genomics for SLC25A5-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC25A5-AS1 Gene

Promoters and enhancers for SLC25A5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI119466 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 558 -0.1 -89 4.6 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF143 SP3 SLC25A5-AS1 SLC25A5 PIR58034 SLC25A43 CXorf56 ENSG00000237903 RNU1-67P EEF1A1P30 NKAP NKAPP1
GH0XI119674 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -215.6 -215584 20.2 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B FEZF1 IRF4 YY1 POLR2B SEPT6 NKAPP1 EEF1A1P30 CUL4B UPF3B NKAP NKRF MIR766 CXorf56 LINC01402
GH0XI119493 Enhancer 1.2 Ensembl ENCODE dbSUPER 13.4 -26.4 -26378 4.3 SOX13 TFAP4 FOXA2 SAP130 MAX ZNF384 DMAP1 ZNF644 ZNF48 RARA SLC25A43 CXorf56 SLC25A5 SLC25A5-AS1 ENSG00000226661 GC0XM119476 GC0XM119539
GH0XI119512 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.7 -43.4 -43372 0.6 CTCF ZNF654 RB1 ZNF449 ARID4B ZNF384 REST RAD21 SP1 ZNF121 CXorf56 SLC25A43 SLC25A5-AS1 SLC25A5 ENSG00000237903 RNU1-67P ENSG00000226661 GC0XM119539 GC0XM119476
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC25A5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC25A5-AS1 Gene

Genomic Locations for SLC25A5-AS1 Gene
chrX:119,466,033-119,469,120
(GRCh38/hg38)
Size:
3,088 bases
Orientation:
Minus strand
chrX:118,599,996-118,603,083
(GRCh37/hg19)

Genomic View for SLC25A5-AS1 Gene

Genes around SLC25A5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A5-AS1 Gene

Proteins for SLC25A5-AS1 Gene

Post-translational modifications for SLC25A5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A5-AS1 Gene

Domains & Families for SLC25A5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC25A5-AS1 Gene

Function for SLC25A5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A5-AS1 Gene

Localization for SLC25A5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC25A5-AS1 Gene

Pathways & Interactions for SLC25A5-AS1 Gene

SuperPathways for SLC25A5-AS1 Gene

No Data Available

Interacting Proteins for SLC25A5-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC25A5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC25A5-AS1 Gene

Drugs & Compounds for SLC25A5-AS1 Gene

No Compound Related Data Available

Transcripts for SLC25A5-AS1 Gene

mRNA/cDNA for SLC25A5-AS1 Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC25A5-AS1 Gene

SLC25A5 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A5-AS1 Gene

No ASD Table

Relevant External Links for SLC25A5-AS1 Gene

GeneLoc Exon Structure for
SLC25A5-AS1
ECgene alternative splicing isoforms for
SLC25A5-AS1

Expression for SLC25A5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC25A5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLC25A5-AS1 Gene:

Hs.714405
genes like me logo Genes that share expression patterns with SLC25A5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC25A5-AS1 Gene

Orthologs for SLC25A5-AS1 Gene

Evolution for SLC25A5-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A5-AS1 (if available)
TreeFam:
Gene Tree for SLC25A5-AS1 (if available)

No data available for Orthologs for SLC25A5-AS1 Gene

Paralogs for SLC25A5-AS1 Gene

No data available for Paralogs for SLC25A5-AS1 Gene

Variants for SLC25A5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC25A5-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs115513989 uncertain-significance, not specified 119,470,436(-) C/G upstream_transcript_variant
rs73213195 benign, not specified 119,471,038(-) G/T upstream_transcript_variant
rs77294853 benign, not specified 119,471,054(-) C/T upstream_transcript_variant
rs80323990 benign, not specified 119,471,049(-) G/C upstream_transcript_variant
rs1001118558 -- 119,469,498(-) C/T upstream_transcript_variant

Additional Variant Information for SLC25A5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC25A5-AS1 Gene

Disorders for SLC25A5-AS1 Gene

Additional Disease Information for SLC25A5-AS1

No disorders were found for SLC25A5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A5-AS1 Gene

Publications for SLC25A5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SLC25A5-AS1 Gene

Sources for SLC25A5-AS1 Gene

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