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Aliases for SLC25A5-AS1 Gene

Subcategory (RNA class) for SLC25A5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SLC25A5-AS1 Gene

  • SLC25A5 Antisense RNA 1 2 3 5
  • SLC25A5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC25A5-AS1 Gene

ORGUL Members for SLC25A5-AS1 Gene

Previous GeneCards Identifiers for SLC25A5-AS1 Gene

  • GC0XM118601

Summaries for SLC25A5-AS1 Gene

GeneCards Summary for SLC25A5-AS1 Gene

SLC25A5-AS1 (SLC25A5 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC25A5-AS1 Gene

Genomics for SLC25A5-AS1 Gene

Regulatory Elements for SLC25A5-AS1 Gene

Enhancers for SLC25A5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF119493 1.1 Ensembl ENCODE 13.4 -26.4 -26379 4.3 DMAP1 ZNF48 RAD21 RARA ZNF654 CEBPA HNF4A MYC CTCF SOX13 SLC25A43 CXorf56 SLC25A5 SLC25A5-AS1 ENSG00000226661 GC0XM119476 GC0XM119539
GH0XF119512 0.9 Ensembl ENCODE 12.7 -43.4 -43373 0.6 CTCF ZNF654 ARID4B ZNF384 REST RAD21 ZNF121 SMC3 BCL6 CXorf56 SLC25A43 SLC25A5 SLC25A5-AS1 RNU1-67P ENSG00000237903 ENSG00000226661 GC0XM119539 GC0XM119476
GH0XF119466 1.1 ENCODE 7.9 -0.1 -89 4.6 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SP3 NFYC REST SLC25A43 UPF3B CXorf56 ENSG00000237903 RNU1-67P RHOXF1 NKAPP1 NKRF LINC01402 ZCCHC12
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC25A5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SLC25A5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000073058 220 2201 PKNOX1 ATF1 ZNF493 ARID4B SIN3A DMAP1 ZNF2 GLIS2 ELK1 ZNF143

Genomic Location for SLC25A5-AS1 Gene

Chromosome:
X
Start:
119,466,033 bp from pter
End:
119,469,120 bp from pter
Size:
3,088 bases
Orientation:
Minus strand

Genomic View for SLC25A5-AS1 Gene

Genes around SLC25A5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A5-AS1 Gene

Proteins for SLC25A5-AS1 Gene

Post-translational modifications for SLC25A5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A5-AS1 Gene

Domains & Families for SLC25A5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC25A5-AS1 Gene

Function for SLC25A5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A5-AS1 Gene

Localization for SLC25A5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC25A5-AS1 Gene

Pathways & Interactions for SLC25A5-AS1 Gene

SuperPathways for SLC25A5-AS1 Gene

No Data Available

Interacting Proteins for SLC25A5-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC25A5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC25A5-AS1 Gene

Transcripts for SLC25A5-AS1 Gene

mRNA/cDNA for SLC25A5-AS1 Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC25A5-AS1 Gene

SLC25A5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A5-AS1 Gene

No ASD Table

Relevant External Links for SLC25A5-AS1 Gene

GeneLoc Exon Structure for
SLC25A5-AS1
ECgene alternative splicing isoforms for
SLC25A5-AS1

Expression for SLC25A5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC25A5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLC25A5-AS1 Gene:

Hs.714405
genes like me logo Genes that share expression patterns with SLC25A5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC25A5-AS1 Gene

Orthologs for SLC25A5-AS1 Gene

Evolution for SLC25A5-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A5-AS1 (if available)
TreeFam:
Gene Tree for SLC25A5-AS1 (if available)

No data available for Orthologs for SLC25A5-AS1 Gene

Paralogs for SLC25A5-AS1 Gene

No data available for Paralogs for SLC25A5-AS1 Gene

Variants for SLC25A5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC25A5-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs115513989 Uncertain significance 119,470,436(+) TGTCA(C/G)TGCTG upstream-variant-2KB, reference, missense
rs73213195 Benign 119,471,038(+) ATGAT(G/T)AAATC upstream-variant-2KB, reference, stop-gained
rs77294853 Benign 119,471,054(+) GTACA(C/T)ATAAG upstream-variant-2KB, reference, missense
rs80323990 Benign 119,471,049(+) AAGAA(C/G)TACAC upstream-variant-2KB, reference, missense
rs1055285 -- 119,466,250(-) TTAAG(A/G)TCATG intron-variant, nc-transcript-variant

Relevant External Links for SLC25A5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC25A5-AS1 Gene

Disorders for SLC25A5-AS1 Gene

Relevant External Links for SLC25A5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC25A5-AS1

No disorders were found for SLC25A5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A5-AS1 Gene

Publications for SLC25A5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SLC25A5-AS1 Gene

Sources for SLC25A5-AS1 Gene

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