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Aliases for SLC25A48 Gene

Aliases for SLC25A48 Gene

  • Solute Carrier Family 25, Member 48 2 3
  • HCC-Down-Regulated Mitochondrial Carrier Protein 2

External Ids for SLC25A48 Gene

Previous GeneCards Identifiers for SLC25A48 Gene

  • GC05P135170
  • GC05P130358

Summaries for SLC25A48 Gene

GeneCards Summary for SLC25A48 Gene

SLC25A48 (Solute Carrier Family 25, Member 48) is a Protein Coding gene. An important paralog of this gene is SLC25A20.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC25A48 Gene

Genomics for SLC25A48 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SLC25A48 Gene

Chromosome:
5
Start:
135,834,649 bp from pter
End:
135,888,637 bp from pter
Size:
53,989 bases
Orientation:
Plus strand

Genomic View for SLC25A48 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SLC25A48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A48 Gene

No data available for Regulatory Elements for SLC25A48 Gene

Proteins for SLC25A48 Gene

  • Protein details for SLC25A48 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZT89-S2548_HUMAN
    Recommended name:
    Solute carrier family 25 member 48
    Protein Accession:
    Q6ZT89
    Secondary Accessions:
    • Q8TAV9

    Protein attributes for SLC25A48 Gene

    Size:
    311 amino acids
    Molecular mass:
    33440 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SLC25A48 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC25A48 Gene

Proteomics data for SLC25A48 Gene at MOPED

Post-translational modifications for SLC25A48 Gene

No Post-translational modifications

Other Protein References for SLC25A48 Gene

No data available for DME Specific Peptides for SLC25A48 Gene

Domains & Families for SLC25A48 Gene

Gene Families for SLC25A48 Gene

Protein Domains for SLC25A48 Gene

Suggested Antigen Peptide Sequences for SLC25A48 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZT89

UniProtKB/Swiss-Prot:

S2548_HUMAN :
  • Belongs to the mitochondrial carrier (TC 2.A.29) family.
  • Contains 3 Solcar repeats.
Family:
  • Belongs to the mitochondrial carrier (TC 2.A.29) family.
Similarity:
  • Contains 3 Solcar repeats.
genes like me logo Genes that share domains with SLC25A48: view

Function for SLC25A48 Gene

Gene Ontology (GO) - Molecular Function for SLC25A48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with SLC25A48: view

Phenotypes for SLC25A48 Gene

GenomeRNAi human phenotypes for SLC25A48:
genes like me logo Genes that share phenotypes with SLC25A48: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SLC25A48

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A48 Gene

Localization for SLC25A48 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC25A48 Gene

Mitochondrion inner membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC25A48 Gene COMPARTMENTS Subcellular localization image for SLC25A48 gene
Compartment Confidence
mitochondrion 3
cytoskeleton 2

Gene Ontology (GO) - Cellular Components for SLC25A48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
GO:0005743 mitochondrial inner membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC25A48: view

Pathways & Interactions for SLC25A48 Gene

SuperPathways for SLC25A48 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC25A48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport --
GO:0055085 transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC25A48: view

No data available for Pathways by source and SIGNOR curated interactions for SLC25A48 Gene

Drugs & Compounds for SLC25A48 Gene

No Compound Related Data Available

Transcripts for SLC25A48 Gene

Unigene Clusters for SLC25A48 Gene

Solute carrier family 25, member 48:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SLC25A48

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A48 Gene

No ASD Table

Relevant External Links for SLC25A48 Gene

GeneLoc Exon Structure for
SLC25A48
ECgene alternative splicing isoforms for
SLC25A48

Expression for SLC25A48 Gene

mRNA expression in normal human tissues for SLC25A48 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SLC25A48 Gene

This gene is overexpressed in Nerve - Tibial (x12.3), Brain - Amygdala (x4.3), and Brain - Hippocampus (x4.3).

Protein differential expression in normal tissues from HIPED for SLC25A48 Gene

This gene is overexpressed in Blymphocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SLC25A48 Gene



SOURCE GeneReport for Unigene cluster for SLC25A48 Gene Hs.412418

genes like me logo Genes that share expression patterns with SLC25A48: view

Protein tissue co-expression partners for SLC25A48 Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SLC25A48 Gene

Orthologs for SLC25A48 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC25A48 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Slc25a48 16
Slc25a48 36
  • 41 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SLC25A48 36
  • 42 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC25A48 36
  • 44 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SLC25A48 36
  • 39 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SLC25A48 36
  • 8 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SLC25A48 36
  • 47 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC25A48 36
  • 29 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SLC25A48 36
  • 34 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.8530 35
zebrafish
(Danio rerio)
Actinopterygii Dr.28307 35
slc25a48 36
  • 31 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG5646 36
  • 16 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea R07B7.10 36
  • 18 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YMC1 36
  • 14 (a)
ManyToMany
YMC2 36
  • 16 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 21 (a)
OneToOne
Species with no ortholog for SLC25A48:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SLC25A48 Gene

ENSEMBL:
Gene Tree for SLC25A48 (if available)
TreeFam:
Gene Tree for SLC25A48 (if available)

Paralogs for SLC25A48 Gene

Paralogs for SLC25A48 Gene

(8) SIMAP similar genes for SLC25A48 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with SLC25A48: view

Variants for SLC25A48 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLC25A48 Gene

Variant ID Type Subtype PubMed ID
nsv508380 CNV Loss 20534489
dgv1853e1 CNV Complex 17122850

Variation tolerance for SLC25A48 Gene

Residual Variation Intolerance Score: 68.77% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.31; 26.09% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SLC25A48 Gene

HapMap Linkage Disequilibrium report
SLC25A48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SLC25A48 Gene

Disorders for SLC25A48 Gene

Relevant External Links for SLC25A48

Human Genome Epidemiology (HuGE) Navigator
SLC25A48
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC25A48
genes like me logo Genes that share disorders with SLC25A48: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A48 Gene

Publications for SLC25A48 Gene

  1. HDMCP uncouples yeast mitochondrial respiration and alleviates steatosis in L02 and hepG2 cells by decreasing ATP and H2O2 levels: a novel mechanism for NAFLD. (PMID: 19303656) Jin X. … Li Y.M. (J. Hepatol. 2009) 2 67
  2. Cloning and identification of hepatocellular carcinoma down-regulated mitochondrial carrier protein, a novel liver-specific uncoupling protein. (PMID: 15322095) Tan M.G.K. … Hui K.M. (J. Biol. Chem. 2004) 2 67
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
  4. The mitochondrial transporter family SLC25: identification, properties and physiopathology. (PMID: 23266187) Palmieri F. (Mol. Aspects Med. 2013) 67
  5. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 67

Products for SLC25A48 Gene

Sources for SLC25A48 Gene

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