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Aliases for SLC25A30-AS1 Gene

Subcategory (RNA class) for SLC25A30-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC25A30-AS1 Gene

  • SLC25A30 Antisense RNA 1 2 3 5
  • SLC25A30 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXyac-YMR12DG2.1 3

External Ids for SLC25A30-AS1 Gene

Previous GeneCards Identifiers for SLC25A30-AS1 Gene

  • GC13P045993

Summaries for SLC25A30-AS1 Gene

GeneCards Summary for SLC25A30-AS1 Gene

SLC25A30-AS1 (SLC25A30 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC25A30-AS1 Gene

Genomics for SLC25A30-AS1 Gene

Regulatory Elements for SLC25A30-AS1 Gene

Enhancers for SLC25A30-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F045394 0.7 Ensembl ENCODE 22.5 -22.0 -22043 2.7 ETV1 ZIC2 GATA2 MYNN ZNF512 GLIS1 SCRT2 ZNF600 SLC25A30-AS1 SLC25A30 PPIAP25 COG3 TPT1-AS1 RCN1P2
GH13F045444 0.8 ENCODE 13.8 +29.5 29508 5.7 ATF1 MLX ZFP64 ARID4B ZNF48 YY1 SLC30A9 SP5 PPARG KAT8 SLC25A30 SLC25A30-AS1 TPT1-AS1 PPIAP25 COG3
GH13F045455 0.4 ENCODE 13.1 +38.3 38328 1.5 ZNF680 JUND FOS PPIAP25 SLC25A30 SLC25A30-AS1 TPT1-AS1 COG3
GH13F045499 0.2 ENCODE 12.5 +82.3 82324 2.8 JUN CEBPG RAD21 RARA YY1 ZNF316 HNF4G FOS MAFK MAFG COG3 PPIAP25 SLC25A30 SLC25A30-AS1 TPT1-AS1 GC13M045553
GH13F045395 0.5 ENCODE 12.3 -24.0 -23992 0.1 CTCF SMC3 PRDM1 RAD21 SLC25A30 SLC25A30-AS1 PPIAP25 COG3 RCN1P2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SLC25A30-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC25A30-AS1 Gene

Chromosome:
13
Start:
45,418,162 bp from pter
End:
45,420,371 bp from pter
Size:
2,210 bases
Orientation:
Plus strand

Genomic View for SLC25A30-AS1 Gene

Genes around SLC25A30-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A30-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A30-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A30-AS1 Gene

Proteins for SLC25A30-AS1 Gene

Post-translational modifications for SLC25A30-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A30-AS1 Gene

Domains & Families for SLC25A30-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC25A30-AS1 Gene

Function for SLC25A30-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A30-AS1 Gene

Localization for SLC25A30-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC25A30-AS1 Gene

Pathways & Interactions for SLC25A30-AS1 Gene

SuperPathways for SLC25A30-AS1 Gene

No Data Available

Interacting Proteins for SLC25A30-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC25A30-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC25A30-AS1 Gene

Transcripts for SLC25A30-AS1 Gene

mRNA/cDNA for SLC25A30-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC25A30-AS1 Gene

SLC25A30 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A30-AS1 Gene

No ASD Table

Relevant External Links for SLC25A30-AS1 Gene

GeneLoc Exon Structure for
SLC25A30-AS1
ECgene alternative splicing isoforms for
SLC25A30-AS1

Expression for SLC25A30-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC25A30-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLC25A30-AS1 Gene:

Hs.658038
genes like me logo Genes that share expression patterns with SLC25A30-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC25A30-AS1 Gene

Orthologs for SLC25A30-AS1 Gene

Evolution for SLC25A30-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A30-AS1 (if available)
TreeFam:
Gene Tree for SLC25A30-AS1 (if available)

No data available for Orthologs for SLC25A30-AS1 Gene

Paralogs for SLC25A30-AS1 Gene

No data available for Paralogs for SLC25A30-AS1 Gene

Variants for SLC25A30-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC25A30-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10661035 -- 45,418,578(+) TGAGG(-/AGG)GAGCT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs10687246 -- 45,418,577(+) TGCCT(-/GAG)GAGGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111729345 -- 45,418,945(+) CAAAA(A/C)AAAAA intron-variant, upstream-variant-2KB
rs112112074 -- 45,418,946(+) AAAAA(A/C)AAAAA intron-variant, upstream-variant-2KB
rs113768424 -- 45,419,088(+) ATCGC(A/G)CCACT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SLC25A30-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv223e201 CNV deletion 23290073
esv3631957 CNV loss 21293372
nsv455875 CNV loss 19166990
nsv510579 CNV deletion 20534489
nsv561578 CNV loss 21841781

Relevant External Links for SLC25A30-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A30-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC25A30-AS1 Gene

Disorders for SLC25A30-AS1 Gene

Relevant External Links for SLC25A30-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC25A30-AS1

No disorders were found for SLC25A30-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A30-AS1 Gene

Publications for SLC25A30-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SLC25A30-AS1 Gene

Sources for SLC25A30-AS1 Gene

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