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Aliases for SLC25A21-AS1 Gene

Subcategory (RNA class) for SLC25A21-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC25A21-AS1 Gene

  • SLC25A21 Antisense RNA 1 2 3 5

External Ids for SLC25A21-AS1 Gene

Previous GeneCards Identifiers for SLC25A21-AS1 Gene

  • GC14P037642

Summaries for SLC25A21-AS1 Gene

GeneCards Summary for SLC25A21-AS1 Gene

SLC25A21-AS1 (SLC25A21 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC25A21-AS1 Gene

Genomics for SLC25A21-AS1 Gene

Regulatory Elements for SLC25A21-AS1 Gene

Enhancers for SLC25A21-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F037171 1.1 ENCODE 16.6 +0.6 557 1.9 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 ZNF143 SLC25A21-AS1 SLC25A21
GH14F037582 1.7 FANTOM5 Ensembl ENCODE 8.6 +419.6 419563 18.0 PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF143 MIPOL1 SLC25A21-AS1 FOXA1 TTC6 ENSG00000259087
GH14F037196 1.1 ENCODE 12.8 +25.7 25728 2.5 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF263 SP3 SP5 NFYC MIPOL1 SLC25A21-AS1 RNU6-273P
GH14F037116 1 ENCODE 12.4 -54.7 -54679 2.2 PKNOX1 DMAP1 FEZF1 YY1 FOS ZNF202 SP5 MXD4 ZHX2 MIER2 SLC25A21-AS1 SLC25A21 GC14P037106
GH14F037142 0.9 Ensembl ENCODE 12.5 -28.8 -28774 1.4 PKNOX1 RFX1 CEBPB REST PLRG1 ZSCAN16 ATF3 SCRT2 SLC25A21-AS1 GC14P037106
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC25A21-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SLC25A21-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000240215 813 2199 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF207

Genomic Location for SLC25A21-AS1 Gene

Chromosome:
14
Start:
37,171,888 bp from pter
End:
37,173,811 bp from pter
Size:
1,924 bases
Orientation:
Plus strand

Genomic View for SLC25A21-AS1 Gene

Genes around SLC25A21-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A21-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A21-AS1 Gene

Proteins for SLC25A21-AS1 Gene

Post-translational modifications for SLC25A21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A21-AS1 Gene

Domains & Families for SLC25A21-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC25A21-AS1 Gene

Function for SLC25A21-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A21-AS1 Gene

Localization for SLC25A21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC25A21-AS1 Gene

Pathways & Interactions for SLC25A21-AS1 Gene

SuperPathways for SLC25A21-AS1 Gene

No Data Available

Interacting Proteins for SLC25A21-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC25A21-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC25A21-AS1 Gene

Transcripts for SLC25A21-AS1 Gene

mRNA/cDNA for SLC25A21-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A21-AS1 Gene

No ASD Table

Relevant External Links for SLC25A21-AS1 Gene

GeneLoc Exon Structure for
SLC25A21-AS1
ECgene alternative splicing isoforms for
SLC25A21-AS1

Expression for SLC25A21-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC25A21-AS1 Gene

Orthologs for SLC25A21-AS1 Gene

Evolution for SLC25A21-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A21-AS1 (if available)
TreeFam:
Gene Tree for SLC25A21-AS1 (if available)

No data available for Orthologs for SLC25A21-AS1 Gene

Paralogs for SLC25A21-AS1 Gene

No data available for Paralogs for SLC25A21-AS1 Gene

Variants for SLC25A21-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC25A21-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1057564 -- 37,172,454(+) CTCAA(C/G)CGCGT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs10661841 -- 37,171,432(+) ATAAT(-/ATAAT/TATAA)TTATT intron-variant, upstream-variant-2KB
rs10665173 -- 37,171,431(+) GTTAC(-/TATAA)TATAA intron-variant, upstream-variant-2KB
rs111430783 -- 37,172,633(+) GGCTC(A/C)CCGCA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs111568279 -- 37,174,175(+) ACCCC(A/C)ACAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SLC25A21-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1153559 CNV deletion 26484159
dgv1871n100 CNV gain 25217958

Variation tolerance for SLC25A21-AS1 Gene

Gene Damage Index Score: 2.77; 47.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SLC25A21-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC25A21-AS1 Gene

Disorders for SLC25A21-AS1 Gene

Relevant External Links for SLC25A21-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC25A21-AS1

No disorders were found for SLC25A21-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A21-AS1 Gene

Publications for SLC25A21-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SLC25A21-AS1 Gene

Sources for SLC25A21-AS1 Gene

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