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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

SLC22A9 Gene

protein-coding GIFtS: 48
GCID: GC11P063137

solute carrier family 22 (organic anion transporter), member...

Explore 1 disease affiliated with
SLC22A9 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Solute Carrier Family 22 (Organic Anion Transporter), Member 9¹ ²		HOAT4²
OAT4¹ ² ³		UST3H²
OAT7¹ ²		Organic Anion Transporter 7²
UST3¹ ³		Solute Carrier Family 22 (Organic Anion/Cation Transporter), Member 9²
Organic Anion Transporter 4² ³		Solute Carrier Family 22 Member 9²
FLJ23666¹		Ust3¹

External Ids:	HGNC: 16261¹	Entrez Gene: 114571²	Ensembl: ENSG00000149742⁷	OMIM: 607579⁵	UniProtKB: Q8IVM8³

Export aliases for SLC22A9 gene to outside databases

Previous GC identifers: GC11U990605 GC11M064712 GC11P063388 GC11P062912 GC11P062893 GC11P059466

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for SLC22A9

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000011.9 NC_018922.1 NT_167190.1

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the SLC22A9 gene promoter:
AP-2rep AREB6 HNF-1 LyF-1 GATA-1 HNF-1A
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: SLC22A9 promoter sequence

Search SABiosciences Chromatin IP Primers for SLC22A9

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC22A9

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q13.1 Ensembl cytogenetic band: 11q12.3 HGNC cytogenetic band: 11q12.3

SLC22A9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC22A9 gene location

GeneLoc information about chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11P063137: view genomic region (about GC identifiers)

Start:	63,137,261 bp from pter	End:	63,177,766 bp from pter
Size:	40,506 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: S22A9_HUMAN, Q8IVM8 (See protein sequence)

Recommended Name: Solute carrier family 22 member 9

Size: 553 amino acids; 62169 Da

Subcellular location: Membrane; Multi-pass membrane protein (Potential)

Secondary accessions: A0AVB7 Q8TCC8 Q8TEC0 Q8WYN7

Alternative splicing: 2 isoforms: Q8IVM8-1 Q8IVM8-2 (May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)

Explore the universe of human proteins at neXtProt for SLC22A9: NX_Q8IVM8

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q8IVM8

SLC22A9 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_543142.2

ENSEMBL proteins:

ENSP00000440206 ENSP00000279178 ENSP00000311527

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0016021	integral to membrane	IEA	--

SLC22A9 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

SLC22A9 for domains About GeneDecksing

3 InterPro domains/families:

IPR020846 MFS_dom

IPR011701 MFS

IPR016196 MFS_dom_general_subst_transpt

Graphical View of Domain Structure for InterPro Entry Q8IVM8

ProtoNet protein and cluster: Q8IVM8

UniProtKB/Swiss-Prot: S22A9_HUMAN, Q8IVM8

Similarity: Belongs to the major facilitator (TC 2.A.1) superfamily. Organic cation transporter (TC 2.A.1.19) family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for SLC22A9

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

3 Interacting proteins for SLC22A9 (Q8IVM8³ ENSP00000279178⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
SLC9A3R1	O14745³, ENSP00000262613⁴	I2D: score=1 STRING: ENSP00000262613
SLC9A3R2	Q15599³, ENSP00000408005⁴	I2D: score=1 STRING: ENSP00000408005
PDZD3	ENSP00000327107⁴	STRING: ENSP00000327107

About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0055085	transmembrane transport	IEA	--

SLC22A9 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

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Browse Tocris compounds for SLC22A9
Search CenterWatch for drugs/clinical trials and news about SLC22A9 / S22A9

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for SLC22A9 gene:

NM_080866.2

Unigene Cluster for SLC22A9:

Solute carrier family 22 (organic anion transporter), member 9

Hs.502772 [show with all ESTs]

Unigene Representative Sequence: AB074812

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000536333 ENST00000279178(uc001nww.3) ENST00000310969(uc001nwx.3)

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Additional cDNA sequence:

AB062418.1 AB074812.1 AF440402.1 AJ295270.1 AK074246.1 BC022379.1 BC126288.1

6 DOTS entries:

DT.101980056 DT.100748701 DT.95308652 DT.40124224 DT.40296194 DT.91909083

24/34 AceView cDNA sequences (see all 34):

BX115618 AF440402 AK074246 CB163737 BX117147 NM_080866 AB062418 AA694057

AJ295270 BX502658 AI040384 BG566618 AA693548 BC022379 BX498767 AA033972

N68489 AA705565 BX497080 H57154 AA033971 AA011402 AA705512 R83450

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

SLC22A9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

About this image
See SLC22A9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SLC22A9

SOURCE GeneReport for Unigene cluster: Hs.502772

UniProtKB/Swiss-Prot: S22A9_HUMAN, Q8IVM8

Tissue specificity: Detected in liver

SABiosciences Expression via Pathway-Focused PCR Array including SLC22A9:

Drug Transporters in human mouse rat

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for SLC22A9 gene from 3/13 species (see all 13) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
zebrafish (Danio rerio)	Actinopterygii	CU638714.2⁶	--	32(a)	possible ortholog	24(20432232-20434293)
fruit fly (Drosophila melanogaster)	Insecta	CG6006⁶ CG8925⁶ (see all 6)	--	18(a) 17(a) (see all 6)	many ↔ many many ↔ many (see all 6)	3R(11981040-11997488) 3R(11997731-12006200)
worm (Caenorhabditis elegans)	Secernentea	C44C10.3⁶ T22F7.1⁶ (see all 24)	Protein T22F7.1 (see all 24)	19(a) 18(a) (see all 24)	possible ortholog possible ortholog (see all 24)	X(11702469-11704224) III(542064-546532)

ENSEMBL Gene Tree for SLC22A9 (if available)
TreeFam Gene Tree for SLC22A9 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for SLC22A9 gene

SLC22A11² SLC22A5² SLC22A8² SLC22A1² SLC22A24² SLC22A4² SLC22A2² SLC22A10²

SLC22A13² SLC22A6² SLC22A15² SLC22A7² SLC22A12² SLC22A3² SLC22A16² SLC22A25²

13 SIMAP similar genes for SLC22A9 using alignment to 1 protein entry: S22A9_HUMAN:

OAT7 SLC22A25 UST6 SLC22A24 HMFN2567 SLC22A11

SLC22A10 SLC22A12 SLC22A8 SLC22A6 SLC22A20 SLC22A13

SLC22A7

SLC22A9 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Clinical significance	Chr 11 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data				Transcription Related Data				Allele Frequencies
			--	--	--		--	--
rs139356873^1,2	--	63135373(+)	`AAATAC/TCATTT`	1	--	us2k¹		0	--	--	--	--
rs184509259^1,2	--	63135429(+)	`TCATGC/TTGCTA`	1	--	us2k¹		0	--	--	--	--
rs187393995^1,2	--	63135547(+)	`ACATAC/TACACC`	1	--	us2k¹		0	--	--	--	--
rs191922335^1,2	--	63135594(+)	`GTGTCA/CTTTGT`	1	--	us2k¹		0	--	--	--	--
rs141845126^1,2	--	63135607(+)	`GGACAC/TGGATG`	1	--	us2k¹		0	--	--	--	--
rs184762494^1,2	--	63135678(+)	`TTCTCA/CCTCAT`	1	--	us2k¹		0	--	--	--	--
rs190522830^1,2	--	63135713(+)	`ACATGA/GACACA`	1	--	us2k¹		0	--	--	--	--
rs180983021^1,2	--	63135750(+)	`CAGTTG/TTGGGG`	1	--	us2k¹		0	--	--	--	--
rs184404588^1,2	--	63135777(+)	`GGATAA/GCATTA`	1	--	us2k¹		0	--	--	--	--
rs189751103^1,2	--	63135807(+)	`AATGAC/TGAATT`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for SLC22A9 (63137261 - 63177766 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for SLC22A9
1 CNV: 101238
Human Gene Mutation Database (HGMD): SLC22A9

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

SLC22A9 for disorders           About GeneDecksing

OMIM gene information: 607579    OMIM disorders: --

1 disease for SLC22A9:    About MalaCards

anus cancer

1 disease from the University of Copenhagen DISEASES database for SLC22A9:

Anus cancer

Human Genome Epidemiology (HuGE) Navigator: SLC22A9 (1 document)

Export disorders for SLC22A9 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for SLC22A9 gene, integrated from 9 sources (see all 22):
(articles sorted by number of sources associating them with SLC22A9)

Utopia: connect your pdf to the dynamic
world of online information

Isolation of a family of organic anion transporters from human liver and kidney. (PubMed id 11327718)^{1, 2, 3} Sun W.... Erion M.D. (2001)
Novel liver-specific organic anion transporter OAT7 that operates the exchange of sulfate conjugates for short chain fatty acid butyrate. (PubMed id 17393504)^{1, 3} Shin H.J....Kanai Y. (2007)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Functional differences in steroid sulfate uptake of organic anion transporter 4 (OAT4) and organic anion transporting polypeptide 2B1 (OATP2B1) in human placenta. (PubMed id 18501590)^{1, 9} Ugele B....Rex-Haffner M. (2008)
The genetic architecture of economic and political pre ferences. (PubMed id 22566634)¹ Benjamin D.J....Visscher P.M. (2012)
Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)¹ Rose J.E....Uhl G.R. (2010)
Human organic anion transporter hOAT4 is a transporte r of perfluorooctanoic acid. (PubMed id 19371258)¹ Nakagawa H....Koizumi A. (2009)
Organic anion transporters OAT1 and OAT4 mediate the high affinity transport of glutarate derivatives accumulating in patients with glutaric acidurias. (PubMed id 18365245)¹ Hagos Y....Burckhardt B.C. (2008)
Analysis of regulatory polymorphisms in organic ion transporter genes (SLC22A) in the kidney. (PubMed id 18414781)¹ Ogasawara K....Inui K. (2008)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 114571	HGNC: 16261	AceView: SLC22A9	Ensembl:ENSG00000149742	euGenes: HUgn114571
ECgene: SLC22A9	H-InvDB: SLC22A9

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for SLC22A9	Pharmacogenomics, SNPs, Pathways

Intellectual Property for SLC22A9 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for SLC22A9 gene:
Search GeneIP for patents involving SLC22A9

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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SLC22A9 Gene

solute carrier family 22 (organic anion transporter), member...

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SLC22A9 Gene

solute carrier family 22 (organic anion transporter), member...

Aliasesfor SLC22A9 gene

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