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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SLC22A9 Gene

protein-coding   GIFtS: 48
GCID: GC11P063137

Solute Carrier Family 22 (Organic Anion Transporter), Member...

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Solute Carrier Family 22 (Organic Anion Transporter), Member 91 2     Organic Anion Transporter 72
Organic Anion Transporter 42 3     Solute Carrier Family 22 (Organic Anion/Cation Transporter), Member 92
OAT42 3     Solute Carrier Family 22 Member 92
HOAT42     ust32
OAT72     UST33
UST3H2     

External Ids:    HGNC: 162611   Entrez Gene: 1145712   Ensembl: ENSG000001497427   OMIM: 6075795   UniProtKB: Q8IVM83   

Export aliases for SLC22A9 gene to outside databases

Previous GC identifers: GC11U990605 GC11M064712 GC11P063388 GC11P062912 GC11P062893 GC11P059466


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SLC22A9 Gene: 
SLC22A9 (solute carrier family 22 (organic anion transporter), member 9) is a protein-coding gene. Diseases associated with SLC22A9 include anus cancer. An important paralog of this gene is SLC22A11.

Gene Wiki entry for SLC22A9 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NT_167190.1  NC_018922.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SLC22A9 gene promoter:
         AP-2rep   AREB6   HNF-1   LyF-1   GATA-1   HNF-1A   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLC22A9 promoter sequence
   Search SABiosciences Chromatin IP Primers for SLC22A9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC22A9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q13.1   Ensembl cytogenetic band:  11q12.3   HGNC cytogenetic band: 11q12.3

SLC22A9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC22A9 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P063137:  view genomic region     (about GC identifiers)

Start:
63,137,261 bp from pter      End:
63,177,766 bp from pter
Size:
40,506 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: S22A9_HUMAN, Q8IVM8 (See protein sequence)
Recommended Name: Solute carrier family 22 member 9  
Size: 553 amino acids; 62169 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Secondary accessions: A0AVB7 Q8TCC8 Q8TEC0 Q8WYN7
Alternative splicing: 2 isoforms:  Q8IVM8-1   Q8IVM8-2   (May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)

Explore the universe of human proteins at neXtProt for SLC22A9: NX_Q8IVM8

Explore proteomics data for SLC22A9 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8IVM8

  • SLC22A9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SLC22A9 Protein Expression
    REFSEQ proteins: NP_543142.2  
    ENSEMBL proteins: 
     ENSP00000440206   ENSP00000279178   ENSP00000311527  

    Human Recombinant Protein Products for SLC22A9: 
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    Novus Biologicals SLC22A9 Proteins
    Novus Biologicals SLC22A9 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Browse Proteins at Cloud-Clone Corp. 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral to membrane IEA--

    SLC22A9 for ontologies           About GeneDecksing



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    Browse ELISAs at Cloud-Clone Corp. 
    Browse CLIAs at Cloud-Clone Corp.


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    SLC: Solute carriers

    IUPHAR Guide to PHARMACOLOGY protein family classification: Organic anion transporter 7 
    Organic anion transporters (OATs)

    3 InterPro protein domains:
     IPR020846 MFS_dom
     IPR011701 MFS
     IPR016196 MFS_dom_general_subst_transpt

    Graphical View of Domain Structure for InterPro Entry Q8IVM8

    ProtoNet protein and cluster: Q8IVM8

    UniProtKB/Swiss-Prot: S22A9_HUMAN, Q8IVM8
    Similarity: Belongs to the major facilitator (TC 2.A.1) superfamily. Organic cation transporter (TC 2.A.1.19)
    family


    SLC22A9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0022857transmembrane transporter activity ----
         
    SLC22A9 for ontologies           About GeneDecksing


    Animal Models:
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    miRNA
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    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC22A9


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC22A9

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for SLC22A9 (Q8IVM83 ENSP000002791784) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SLC9A3R1O147453, ENSP000002626134I2D: score=1 STRING: ENSP00000262613
    SLC9A3R2Q155993, ENSP000004080054I2D: score=1 STRING: ENSP00000408005
    PDZD3ENSP000003271074STRING: ENSP00000327107
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0055085transmembrane transport IEA--

    SLC22A9 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SLC22A9 (S22A9)

    Search CenterWatch for drugs/clinical trials and news about SLC22A9 / S22A9

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SLC22A9 gene: 
    NM_080866.2  

    Unigene Cluster for SLC22A9:

    Solute carrier family 22 (organic anion transporter), member 9
    Hs.502772  [show with all ESTs]
    Unigene Representative Sequence: AB074812
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000536333 ENST00000279178(uc001nww.3) ENST00000310969(uc001nwx.3)

    miRNA
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    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate SLC22A9
    SwitchGear 3'UTR luciferase reporter plasmidSLC22A9 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for SLC22A9
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SLC22A9
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    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: SLC22A9 (NM_080866)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for SLC22A9
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SLC22A9
    Sirion Biotech Customized lentivirus for stable overexpression of SLC22A9 
                         Customized lentivirus expression plasmids for stable overexpression of SLC22A9 
    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC22A9
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC22A9

    Additional mRNA sequence: 

    AB062418.1 AB074812.1 AF440402.1 AJ295270.1 AK074246.1 BC022379.1 BC126288.1 

    6 DOTS entries:

    DT.101980056  DT.100748701  DT.95308652  DT.40124224  DT.40296194  DT.91909083 

    24/34 AceView cDNA sequences (see all 34):

    BX117147 AK074246 BX115618 CB163737 NM_080866 AF440402 AJ295270 AB062418 
    AA033972 AA693548 AI040384 BX498767 BC022379 AA694057 BG566618 BX502658 
    AA705565 N68489 H57154 R83450 AA011402 H61474 AA011459 AA033971 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SLC22A9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    SLC22A9 Expression
    About this image


    See SLC22A9 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SLC22A9

    SOURCE GeneReport for Unigene cluster: Hs.502772

    UniProtKB/Swiss-Prot: S22A9_HUMAN, Q8IVM8
    Tissue specificity: Detected in liver

        SABiosciences Expression via Pathway-Focused PCR Array including SLC22A9: 
              Drug Transporters in human mouse rat

    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC22A9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and mouse.

    Orthologs for SLC22A9 gene from 1/7 species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Slc22a305
    Slc22a271
    solute carrier family 22, member 305
    solute carrier family 22, member 271
    68.36(n)1
    54.08(a)1
      19 (5.42 cM)5
    1714051  NM_134256.11  NP_599017.11 
     83353715 


    ENSEMBL Gene Tree for SLC22A9 (if available)
    TreeFam Gene Tree for SLC22A9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SLC22A9 gene
    SLC22A112  SLC22A52  SLC22A82  SLC22A12  SLC22A242  SLC22A42  SLC22A22  SLC22A102  
    SLC22A132  SLC22A62  SLC22A152  SLC22A122  SLC22A72  SLC22A162  SLC22A32  SLC22A252  
    13 SIMAP similar genes for SLC22A9 using alignment to 1 protein entry:     S22A9_HUMAN:
    OAT7    SLC22A25    UST6    SLC22A24    HMFN2567    SLC22A11
    SLC22A10    SLC22A12    SLC22A8    SLC22A6    SLC22A20    SLC22A13
    SLC22A7

    SLC22A9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1127 SNPs in SLC22A9 are shown (see all 1127)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0364044
    A breast cancer sample4--see VAR_0364042 M V mis40--------
    VAR_0364034
    A breast cancer sample4--see VAR_0364032 A V mis40--------
    VAR_0364054
    A colorectal cancer sample4--see VAR_0364052 N K mis40--------
    rs1393568731,2
    --63135373(+) AAATAC/TCATTT 1 -- us2k10--------
    rs1845092591,2
    --63135429(+) TCATGC/TTGCTA 1 -- us2k10--------
    rs1873939951,2
    --63135547(+) ACATAC/TACACC 1 -- us2k10--------
    rs1919223351,2
    C--63135594(+) GTGTCA/C/GTTTGT 1 -- us2k10--------
    rs1418451261,2
    --63135607(+) GGACAC/TGGATG 1 -- us2k10--------
    rs1847624941,2
    --63135678(+) TTCTCA/CCTCAT 1 -- us2k10--------
    rs1905228301,2
    --63135713(+) ACATGA/GACACA 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for SLC22A9 (63137261 - 63177766 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for SLC22A9:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv268271CNV Insertion20981092
    esv2653139CNV Insertion19546169


    Human Gene Mutation Database (HGMD): SLC22A9
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing SLC22A9
    DNA2.0 Custom Variant and Variant Library Synthesis for SLC22A9

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 607579    OMIM disorders: --

    2 diseases for SLC22A9:    About MalaCards
    anus cancer    


    SLC22A9 for disorders           About GeneDecksing

    Genetic Association Database (GAD): SLC22A9
    Human Genome Epidemiology (HuGE) Navigator: SLC22A9 (1 document)

    Export disorders for SLC22A9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SLC22A9 gene, integrated from 9 sources (see all 22):
    (articles sorted by number of sources associating them with SLC22A9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Isolation of a family of organic anion transporters from human liver and kidney. (PubMed id 11327718)1, 2, 3 Sun W.... Erion M.D. (2001)
    2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (2010)
    3. Novel liver-specific organic anion transporter OAT7 that operates the exchange of sulfate conjugates for short chain fatty acid butyrate. (PubMed id 17393504)1, 3 Shin H.J....Kanai Y. (2007)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    6. Functional differences in steroid sulfate uptake of organic anion transporter 4 (OAT4) and organic anion transporting polypeptide 2B1 (OATP2B1) in human placenta. (PubMed id 18501590)1, 9 Ugele B....Rex-Haffner M. (2008)
    7. The genetic architecture of economic and political pre ferences. (PubMed id 22566634)1 Benjamin D.J....Visscher P.M. (2012)
    8. Human organic anion transporter hOAT4 is a transporte r of perfluorooctanoic acid. (PubMed id 19371258)1 Nakagawa H....Koizumi A. (2009)
    9. Organic anion transporters OAT1 and OAT4 mediate the high affinity transport of glutarate derivatives accumulating in patients with glutaric acidurias. (PubMed id 18365245)1 Hagos Y....Burckhardt B.C. (2008)
    10. Analysis of regulatory polymorphisms in organic ion transporter genes (SLC22A) in the kidney. (PubMed id 18414781)1 Ogasawara K....Inui K. (2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 114571 HGNC: 16261 AceView: SLC22A9 Ensembl:ENSG00000149742 euGenes: HUgn114571
    ECgene: SLC22A9 H-InvDB: SLC22A9

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SLC22A9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SLC22A9 gene:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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