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SLC22A20 Gene

pseudogene   GIFtS: 37
GCID: GC11P064981

Solute Carrier Family 22, Member 20

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Solute Carrier Family 22, Member 201 2
Organic Anion Transporter 62 3
OAT63 5
Oat62
Solute Carrier Family 22 Member 202

External Ids:    HGNC: 298671   Entrez Gene: 4400442   Ensembl: ENSG000001978477   OMIM: 6116965   UniProtKB: A6NK973   

Export aliases for SLC22A20 gene to outside databases

Previous GC identifers: GC11P064739 GC11P061308


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for SLC22A20 Gene:
SLC22A20 belongs to a large family of transmembrane proteins that function as uniporters, symporters, and
antiporters to transport organic ions across cell membranes (Jacobsson et al., 2007 (PubMed 17714910)).(supplied
by OMIM, Mar 2008)

GeneCards Summary for SLC22A20 Gene:
SLC22A20 (solute carrier family 22, member 20) is a pseudogene. GO annotations related to this gene include transmembrane transporter activity.

UniProtKB/Swiss-Prot: S22AK_HUMAN, A6NK97
Function: Organic anion transporter that mediates the uptake of estrone sulfate. Inhibited by probenecid,
propionate, 2-methylbutyrate, 3-methylbutyrate, benzoate, heptanoate and 2-ethylhaxanoate. May act as an odorant
transporter (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NT_167190.2  NC_018922.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the SLC22A20 gene promoter:
         Bach2   Nkx2-5   NF-kappaB   NF-E2 p45   POU2F1a   NF-kappaB2   ZIC2/Zic2   NF-E2   NF-kappaB1   En-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLC22A20 promoter sequence
   Search Chromatin IP Primers for SLC22A20

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SLC22A20


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q13.1   Ensembl cytogenetic band:  11q13.1   HGNC cytogenetic band: 11q13.1

SLC22A20 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC22A20 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P064981:  view genomic region     (about GC identifiers)

Start:
64,981,311 bp from pter      End:
65,010,228 bp from pter
Size:
28,918 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: S22AK_HUMAN, A6NK97 (See protein sequence)
Recommended Name: Solute carrier family 22 member 20  
Size: 555 amino acids; 60459 Da
Sequence caution: Sequence=BAD18487.1; Type=Erroneous initiation;
Secondary accessions: B9EJB2 Q6ZN88
Alternative splicing: 2 isoforms:  A6NK97-1   A6NK97-2   (Variant in position: 244:G->G (in dbSNP:rs514076))

Explore the universe of human proteins at neXtProt for SLC22A20: NX_A6NK97

Explore proteomics data for SLC22A20 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn54, Asn114
  • Modification sites at PhosphoSitePlus

  • See SLC22A20 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001004326.4  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    SLC: Solute carriers

    IUPHAR Guide to PHARMACOLOGY protein family classification: OAT6
    Orphan or poorly characterized SLC22 family members

    3 InterPro protein domains:
     IPR005828 Sub_transporter
     IPR020846 MFS_dom
     IPR016196 MFS_dom_general_subst_transpt

    Graphical View of Domain Structure for InterPro Entry A6NK97

    ProtoNet protein and cluster: A6NK97

    UniProtKB/Swiss-Prot: S22AK_HUMAN, A6NK97
    Similarity: Belongs to the major facilitator (TC 2.A.1) superfamily. Organic cation transporter (TC 2.A.1.19)
    family


    Find genes that share domains with SLC22A20           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: S22AK_HUMAN, A6NK97
    Function: Organic anion transporter that mediates the uptake of estrone sulfate. Inhibited by probenecid,
    propionate, 2-methylbutyrate, 3-methylbutyrate, benzoate, heptanoate and 2-ethylhaxanoate. May act as an odorant
    transporter (By similarity)

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0022857transmembrane transporter activity IEA--
         
    Find genes that share ontologies with SLC22A20           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for SLC22A20

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    S22AK_HUMAN, A6NK97: Membrane; Multi-pass membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane3

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with SLC22A20           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SLC22A20
    Interactions:

        Search GeneGlobe Interaction Network for SLC22A20

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006811ion transport IEA--

    Find genes that share ontologies with SLC22A20           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SLC22A20 (S22AK)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SLC22A20 gene: 
    NM_001004326.4  

    Unigene Cluster for SLC22A20:

    Solute carrier family 22, member 20
    Hs.532372  [show with all ESTs]
    Unigene Representative Sequence: NR_033396
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000525437(uc001odi.4) ENST00000525264(uc021qlg.1) ENST00000530038
    ENST00000529062 ENST00000534471 ENST00000454680(uc021qlh.1)
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    Additional mRNA sequence: 

    AK094565.1 AK131327.1 BC146850.1 NR_033396.1 

    6 DOTS entries:

    DT.120760472  DT.91890668  DT.105405  DT.120760476  DT.92038061  DT.75144595 

    4 AceView cDNA sequences:

    AK131327 BM826695 NM_001004326 BF833103 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SLC22A20 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCTGGCAGGA
    SLC22A20 Expression
    About this image

    SLC22A20 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SLC22A20 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.532372
        Custom PCR Arrays for SLC22A20
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC22A20

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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      --

    ENSEMBL Gene Tree for SLC22A20 (if available)
    TreeFam Gene Tree for SLC22A20 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for SLC22A20 gene
    15 SIMAP similar genes for SLC22A20 using alignment to 1 protein entry:     S22AK_HUMAN:
    HMFN2567    SLC22A6    SLC22A8    SLC22A10    SLC22A11    SLC22A12
    SLC22A24    SLC22A25    UST6    SLC22A7    OAT7    SLC22A9
    SLC22A13    SLC22A4    SLC22A5

    Find genes that share paralogs with SLC22A20           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SLC22A20 (see all 670)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs122245551,2
    C,F,A,H--64980007(+) GGGGCG/AAAGCT 2 -- us2k122Minor allele frequency- A:0.25NS EA NA WA CSA 2339
    rs676986521,2
    C,F--64980051(+) GTGGGA/GGTTGG 2 -- us2k16Minor allele frequency- G:0.36NA WA EA 364
    rs124172721,2
    C,F,A,H--64980426(+) GGTAGA/GGGTGG 2 -- us2k112Minor allele frequency- G:0.34EA NA WA CSA 719
    rs1926462321,2
    --64980853(+) TTCTCA/GGGAAG 2 -- us2k10--------
    rs1847939791,2
    --64980892(+) TGCATC/TCCATT 2 -- us2k10--------
    rs1396982231,2
    C--64980918(+) CACTTA/GAGGCT 2 -- us2k10--------
    rs1896547001,2
    --64980924(+) AGGCTC/TCAGCT 2 -- us2k10--------
    rs178822411,2
    C,F,H--64980983(+) GAATCG/AGGGCT 2 -- us2k18Minor allele frequency- A:0.04NS NA WA 1074
    rs1807195971,2
    --64981197(+) CCTGAA/GCCCTC 2 -- us2k10--------
    rs2004325891,2
    C--64981366(+) AGACCC/TGCTGG 3 P L mis10--------

    HapMap Linkage Disequilibrium report for SLC22A20 (64981311 - 65010228 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for SLC22A20:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv832190CNV Loss17160897
    nsv897713CNV Loss21882294
    nsv526181CNV Gain19592680

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 611696    OMIM disorders: --


    Find genes that share disorders with SLC22A20           About GenesLikeMe


    Export disorders for SLC22A20 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SLC22A20 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with SLC22A20)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Transport of estrone sulfate by the novel organic anion transporter Oat6 (Slc22a20). (PubMed id 16478971)1, 3 Schnabolk G.W....Sweet D.H. (Am. J. Physiol. Renal Physiol. 2006)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. Identification of a novel murine organic anion transporter family member, OAT6, expressed in olfactory mucosa. (PubMed id 15369770)1, 3 Monte J.C....Nigam S.K. (Biochem. Biophys. Res. Commun. 2004)
    4. Identification of six putative human transporters with structural similarity to the drug transporter SLC22 family. (PubMed id 17714910)1 Jacobsson J.A.... Fredriksson R. (Genomics 2007)
    5. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)
    6. Transcriptome analysis of human gastric cancer. (PubMed id 16341674)1 Oh J.H.... Kim N.S. (Mamm. Genome 2005)
    7. A scan for positively selected genes in the genomes of humans and chimpanzees. (PubMed id 15869325)1 Nielsen R....Cargill M. (PLoS Biol. 2005)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 440044 HGNC: 29867 AceView: FLJ16331 Ensembl:ENSG00000197847 euGenes: HUgn440044
    ECgene: SLC22A20 H-InvDB: SLC22A20

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SLC22A20 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SLC22A20 gene:
    Search GeneIP for patents involving SLC22A20

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Block miRNA regulation of human, mouse, rat SLC22A20 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing SLC22A20
     DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SLC22A20 Predesigned siRNA for gene silencing in human, mouse, rat SLC22A20
     QuantiFast Probe-based Assays in human, mouse, rat SLC22A20 QuantiTect SYBR Green Assays in human, mouse, rat SLC22A20
     Custom PCR Arrays for SLC22A20 Search Chromatin IP Primers for SLC22A20
     Pre-validated RT2 qPCR Primer Assay in human, mouse / rat SLC22A20  Search GeneGlobe Interaction Network for SLC22A20
     Regulatory tfbs in SLC22A20 promoter
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     Search Tocris compounds for SLC22A20 (S22AK)
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     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

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     Proteins for SLC22A20
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     Browse compounds at ApexBio
     Search Addgene for plasmids for SLC22A20
      Search eBioscience for proteins for SLC22A20
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      Search antibodies-online for antibodies for SLC22A20
     antibodies-online kits for SLC22A20 (4 products)
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      Search antibodies-online for proteins for SLC22A20
           
    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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