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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

SLC22A20 Gene

protein-coding GIFtS: 36
GCID: GC11P064981

solute carrier family 22, member 20

Search for SLC22A20
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Solute Carrier Family 22, Member 20¹ ²
Oat6¹ ²
Organic Anion Transporter 6² ³
OAT6³ ⁵
FLJ16331¹
Solute Carrier Family 22 Member 20²

External Ids:	HGNC: 29867¹	Entrez Gene: 440044²	Ensembl: ENSG00000197847⁷	OMIM: 611696⁵	UniProtKB: A6NK97³

ORGUL members:
	NONCODE:n409233

Export aliases for SLC22A20 gene to outside databases

Previous GC identifers: GC11P064739 GC11P061308

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for SLC22A20:

SLC22A20 belongs to a large family of transmembrane proteins that function as uniporters, symporters, and antiporters

to transport organic ions across cell membranes (Jacobsson et al., 2007 (PubMed 17714910)).(supplied by OMIM, Mar

2008)

UniProtKB/Swiss-Prot: S22AK_HUMAN, A6NK97

Function: Organic anion transporter that mediates the uptake of estrone sulfate. Inhibited by probenecid, propionate,

2-methylbutyrate, 3-methylbutyrate, benzoate, heptanoate and 2-ethylhaxanoate. May act as an odorant transporter (By

similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000011.9 NC_018922.1 NT_167190.1

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the SLC22A20 gene promoter:
Bach2 Nkx2-5 NF-kappaB NF-E2 p45 POU2F1a NF-kappaB2 ZIC2/Zic2 NF-E2 NF-kappaB1 En-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: SLC22A20 promoter sequence

Search SABiosciences Chromatin IP Primers for SLC22A20

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC22A20

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q13.1 Ensembl cytogenetic band: 11q13.1 HGNC cytogenetic band: 11q13.1

SLC22A20 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC22A20 gene location

GeneLoc information about chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11P064981: view genomic region (about GC identifiers)

Start:	64,981,311 bp from pter	End:	65,010,228 bp from pter
Size:	28,918 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: S22AK_HUMAN, A6NK97 (See protein sequence)

Recommended Name: Solute carrier family 22 member 20

Size: 555 amino acids; 60459 Da

Subcellular location: Membrane; Multi-pass membrane protein (Potential)

Sequence caution: Sequence=BAD18487.1; Type=Erroneous initiation;

Secondary accessions: B9EJB2 Q6ZN88

Alternative splicing: 2 isoforms: A6NK97-1 A6NK97-2 (Variant in position: 244:G->G (in dbSNP:rs514076))

Explore the universe of human proteins at neXtProt for SLC22A20: NX_A6NK97

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_A6NK97

SLC22A20 Protein expression data from MOPED and PaxDb: --

REFSEQ proteins: NP_001004326.4
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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0016021	integral to membrane	IEA	--

SLC22A20 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

SLC22A20 for domains About GeneDecksing

3 InterPro domains/families:

IPR005828 Sub_transporter

IPR020846 MFS_dom

IPR016196 MFS_dom_general_subst_transpt

Graphical View of Domain Structure for InterPro Entry A6NK97

ProtoNet protein and cluster: A6NK97

UniProtKB/Swiss-Prot: S22AK_HUMAN, A6NK97

Similarity: Belongs to the major facilitator (TC 2.A.1) superfamily. Organic cation transporter (TC 2.A.1.19) family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: S22AK_HUMAN, A6NK97

Function: Organic anion transporter that mediates the uptake of estrone sulfate. Inhibited by probenecid, propionate,

2-methylbutyrate, 3-methylbutyrate, benzoate, heptanoate and 2-ethylhaxanoate. May act as an odorant transporter (By

similarity)

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Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0022857	transmembrane transporter activity	IEA	--

SLC22A20 for ontologies About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for SLC22A20

Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006811	ion transport	IEA	--

SLC22A20 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for SLC22A20
Search CenterWatch for drugs/clinical trials and news about SLC22A20 / S22AK

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for SLC22A20 gene:

NM_001004326.4

Unigene Cluster for SLC22A20:

Solute carrier family 22, member 20

Hs.532372 [show with all ESTs]

Unigene Representative Sequence: NR_033396

6 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000525437(uc001odi.4) ENST00000525264(uc021qlg.1) ENST00000530038

ENST00000529062 ENST00000534471 ENST00000454680(uc021qlh.1)

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Additional cDNA sequence:

AK094565.1 AK131327.1 BC146850.1 NR_033396.1

6 DOTS entries:

DT.120760472 DT.91890668 DT.105405 DT.120760476 DT.92038061 DT.75144595

4 AceView cDNA sequences:

AK131327 BM826695 BF833103 NM_001004326

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

SLC22A20 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCTGGCAGGA

About this image
SOURCE GeneReport for Unigene cluster: Hs.532372

SABiosciences Custom PCR Arrays for SLC22A20

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

--

ENSEMBL Gene Tree for SLC22A20 (if available)
TreeFam Gene Tree for SLC22A20 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 11 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs112316499^1,2	C	--	61311121(+)	`GGGTGC/AGTGAG`	1	--	int¹		1		CSA	2
rs12224555^1,2	C,F,A,H,	--	64980007(+)	`GGGGCG/AAAGCT`	2	--	us2k¹		22		NS EA NA WA CSA	2339
rs67698652^1,2	C,F,	--	64980051(+)	`GTGGGA/GGTTGG`	2	--	us2k¹		6		NA WA EA	364
rs12417272^1,2	C,F,A,H,	--	64980426(+)	`GGTAGA/GGGTGG`	2	--	us2k¹		12		EA NA WA CSA	719
rs192646232^1,2		--	64980853(+)	`TTCTCA/GGGAAG`	2	--	us2k¹		0	--	--	--	--
rs184793979^1,2		--	64980892(+)	`TGCATC/TCCATT`	2	--	us2k¹		0	--	--	--	--
rs139698223^1,2		--	64980918(+)	`CACTTA/GAGGCT`	2	--	us2k¹		0	--	--	--	--
rs189654700^1,2		--	64980924(+)	`AGGCTC/TCAGCT`	2	--	us2k¹		0	--	--	--	--
rs17882241^1,2	C,F,H,	--	64980983(+)	`GAATCG/AGGGCT`	2	--	us2k¹		8		NS NA WA	1074
rs180719597^1,2		--	64981197(+)	`CCTGAA/GCCCTC`	2	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for SLC22A20 (64981311 - 65010228 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for SLC22A20: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

SLC22A20 for disorders About MalaCards

SLC22A20 for disorders About GeneDecksing

OMIM gene information: 611696 OMIM disorders: --

Export disorders for SLC22A20 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for SLC22A20 gene integrated from 9 sources:
(articles sorted by number of sources associating them with SLC22A20)

Utopia: connect your pdf to the dynamic
world of online information

Transport of estrone sulfate by the novel organic ani on transporter Oat6 (Slc22a20). (PubMed id 16478971)^{1, 3} Schnabolk G.W....Sweet D.H. (2006)
Identification of a novel murine organic anion transporter family member, OAT6, expressed in olfactory mucosa. (PubMed id 15369770)^{1, 3} Monte J.C....Nigam S.K. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Identification of six putative human transporters with structural similarity to the drug transporter SLC22 family. (PubMed id 17714910)¹ Jacobsson J.A.... Fredriksson R. (2007)
Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)² Taylor T.D....Sakaki Y. (2006)
Transcriptome analysis of human gastric cancer. (PubMed id 16341674)¹ Oh J.H....Kim N.S. (2005)
A scan for positively selected genes in the genomes of humans and chimpanzees. (PubMed id 15869325)¹ Nielsen R....Cargill M. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)² Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 440044	HGNC: 29867	AceView: FLJ16331	Ensembl:ENSG00000197847	euGenes: HUgn440044
ECgene: SLC22A20	H-InvDB: SLC22A20

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for SLC22A20	Pharmacogenomics, SNPs, Pathways

Intellectual Property for SLC22A20 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for SLC22A20 gene:
Search GeneIP for patents involving SLC22A20

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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SLC22A20 Gene

solute carrier family 22, member 20

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SLC22A20 Gene

solute carrier family 22, member 20

Aliasesfor SLC22A20 gene

Summariesfor SLC22A20 gene

Genomic Viewsfor SLC22A20 gene

Proteinsfor SLC22A20 gene

Protein Domains /Familiesfor SLC22A20 gene

Functionfor SLC22A20 gene

Pathways & Interactionsfor SLC22A20 gene

Drugs & Compoundsfor SLC22A20 gene

Transcriptsfor SLC22A20 gene

Expression for SLC22A20 gene

Orthologsfor SLC22A20 gene

Paralogsfor SLC22A20 gene

Genomic Variantsfor SLC22A20 gene

Disorders / Diseasesfor SLC22A20 gene

Publicationsfor SLC22A20 gene

External Searches for SLC22A20 gene

Genome Databases showing SLC22A20 gene

Other Databases showing SLC22A20 gene

Specialized Databases showing SLC22A20 gene

Intellectual Propertyfor SLC22A20 gene

Productsfor SLC22A20 gene

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Aliases
for SLC22A20 gene

Summaries
for SLC22A20 gene

Genomic Views
for SLC22A20 gene

Proteins
for SLC22A20 gene

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Families
for SLC22A20 gene

Function
for SLC22A20 gene

Pathways & Interactions
for SLC22A20 gene

Drugs & Compounds
for SLC22A20 gene

Transcripts
for SLC22A20 gene

Expression
for SLC22A20 gene

Orthologs
for SLC22A20 gene

Paralogs
for SLC22A20 gene

Genomic Variants
for SLC22A20 gene

Disorders / Diseases
for SLC22A20 gene

Publications
for SLC22A20 gene

Intellectual Property
for SLC22A20 gene

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for SLC22A20 gene