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SLC22A10 Gene

protein-coding   GIFtS: 44
GCID: GC11P062905

Solute Carrier Family 22, Member 10

(Previous names: solute carrier family 22 (organic anion/cation transporter),...)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Solute Carrier Family 22, Member 101 2
Solute Carrier Family 22 (Organic Anion/Cation Transporter), Member 101 2
Organic Anion Transporter 52 3
OAT52 3
hOAT52
Solute Carrier Family 22 Member 102

External Ids:    HGNC: 180571   Entrez Gene: 3877752   Ensembl: ENSG000001849997   OMIM: 6075805   UniProtKB: Q63ZE43   

Export aliases for SLC22A10 gene to outside databases

Previous GC identifers: GC11U990606 GC11P062815 GC11P063057 GC11P059386


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SLC22A10 Gene:
SLC22A10 (solute carrier family 22, member 10) is a protein-coding gene. GO annotations related to this gene include transmembrane transporter activity. An important paralog of this gene is SLC22A11.

Gene Wiki entry for SLC22A10 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NT_167190.2  NC_018922.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the SLC22A10 gene promoter:
         GATA-3   HTF   Pax-6   GATA-2   GATA-1   YY1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for SLC22A10

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SLC22A10


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q12.3   Ensembl cytogenetic band:  11q12.3   HGNC cytogenetic band: 11q12.3

SLC22A10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC22A10 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P062905:  view genomic region     (about GC identifiers)

Start:
62,905,339 bp from pter      End:
63,137,190 bp from pter
Size:
231,852 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: S22AA_HUMAN, Q63ZE4 (See protein sequence)
Recommended Name: Solute carrier family 22 member 10  
Size: 541 amino acids; 60257 Da

Explore the universe of human proteins at neXtProt for SLC22A10: NX_Q63ZE4

Explore proteomics data for SLC22A10 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn56, Asn102

  • See SLC22A10 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001034841.3  
    ENSEMBL proteins: 
     ENSP00000433048   ENSP00000327569   ENSP00000433817   ENSP00000433908   ENSP00000445667  
     ENSP00000444602  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    SLC: Solute carriers

    IUPHAR Guide to PHARMACOLOGY protein family classification: Organic anion transporter 5
    Organic anion transporters (OATs)

    3 InterPro protein domains:
     IPR005828 Sub_transporter
     IPR020846 MFS_dom
     IPR016196 MFS_dom_general_subst_transpt

    Graphical View of Domain Structure for InterPro Entry Q63ZE4

    ProtoNet protein and cluster: Q63ZE4

    UniProtKB/Swiss-Prot: S22AA_HUMAN, Q63ZE4
    Similarity: Belongs to the major facilitator (TC 2.A.1) superfamily. Organic cation transporter (TC 2.A.1.19)
    family


    Find genes that share domains with SLC22A10           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0022857transmembrane transporter activity IEA--
         
    Find genes that share ontologies with SLC22A10           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for SLC22A10

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    S22AA_HUMAN, Q63ZE4: Membrane; Multi-pass membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane3

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with SLC22A10           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SLC22A10
    Interactions:

        Search GeneGlobe Interaction Network for SLC22A10

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0055085transmembrane transport ----

    Find genes that share ontologies with SLC22A10           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Tocris compounds for SLC22A10 (S22AA)

    3 DrugBank Compounds for SLC22A10    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Conjugated EstrogensEstrogens (see all 10)438-67-5transporterinhibitor15068970
    Probenecid-- 57-66-9transporterinhibitor15068970
    Salicyclic acid2-Carboxyphenol (see all 10)69-72-7transporterinhibitor15068970



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
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    REFSEQ mRNAs for SLC22A10 gene: 
    NM_001039752.3  

    Unigene Cluster for SLC22A10:

    Solute carrier family 22, member 10
    Hs.188982  [show with all ESTs]
    Unigene Representative Sequence: NM_001039752
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000525620 ENST00000533483(uc001nwu.4 uc009yor.3) ENST00000533176
    ENST00000332793(uc010rmp.1) ENST00000532724 ENST00000526800 ENST00000544661
    ENST00000535888(uc010rmo.1)
    miRNA
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    Additional mRNA sequence: 

    AK296299.1 AK298430.1 BC171744.1 

    4 DOTS entries:

    DT.100741047  DT.205050  DT.120717915  DT.95247658 

    18 AceView cDNA sequences:

    AV652088 AA680184 CB153872 BX091233 CB164131 AB075876 CB164434 BV190682 
    AV684869 AV699858 AA682573 AV697918 AV694507 AV696710 CB156921 CB157359 
    AV697812 CB162810 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for SLC22A10    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
    SP1:                                                                              
    SP2:                                                                              


    ECgene alternative splicing isoforms for SLC22A10

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SLC22A10 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ATACTTTTGA
    SLC22A10 Expression
    About this image

    SLC22A10 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SLC22A10 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.188982

    UniProtKB/Swiss-Prot: S22AA_HUMAN, Q63ZE4
    Tissue specificity: Detected in fetal and adult liver, and in adult kidney

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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      --

    ENSEMBL Gene Tree for SLC22A10 (if available)
    TreeFam Gene Tree for SLC22A10 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for SLC22A10 gene
    SLC22A112  SLC22A52  SLC22A82  SLC22A12  SLC22A242  SLC22A42  SLC22A22  SLC22A132  
    SLC22A92  SLC22A62  SLC22A152  SLC22A122  SLC22A72  SLC22A162  SLC22A32  SLC22A252  
    Selected SIMAP similar genes for SLC22A10 using alignment to 5 protein entries:     S22AA_HUMAN (see all proteins) (see all similar genes):
    HMFN2567    UST6    SLC22A24    SLC22A25    SLC22A6    SLC22A11
    OAT7    SLC22A9    SLC22A20    SLC22A8    SLC22A23    SLC22A12
    SLC22A16    SLC22A7    SLC22A13    SLC22A3    SLC22A1    SLC22A2

    Find genes that share paralogs with SLC22A10           About GenesLikeMe


    2 Pseudogenes.org Pseudogenes for SLC22A10
    PGOHUM00000258594 PGOHUM00000249499


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SLC22A10 (see all 674)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1397618861,2
    --63055487(+) GCCATA/GAAAAA 1 -- us2k10--------
    rs1820179931,2
    --63055495(+) AAAGAA/TGAGTT 1 -- us2k10--------
    rs1863087731,2
    --63055525(+) GGATGA/CAGCTG 1 -- us2k10--------
    rs1921051321,2
    --63055689(+) GGATAA/GCATTA 1 -- us2k10--------
    rs1139864341,2
    C,F--63055771(+) ACAAAC/ACTGCA 1 -- us2k11Minor allele frequency- A:0.50CSA 2
    rs5177961,2
    H--63055845(+) GTCAAG/ATATGG 1 -- us2k1 tfbs34Minor allele frequency- A:0.00NS EA 418
    rs1809623211,2
    --63055849(+) AGTATA/GGTCAA 1 -- us2k10--------
    rs1859505101,2
    --63055879(+) GGAATA/GGTGTT 1 -- us2k10--------
    rs619301931,2
    C,F--63055927(+) GAGATG/ATAAGT 1 -- us2k14Minor allele frequency- A:0.04NA WA 242
    rs1913258341,2
    --63056485(+) GCATAA/CACGGA 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for SLC22A10 (62905339 - 63137190 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for SLC22A10:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv507596CNV Insertion20534489
    nsv897627CNV Loss21882294
    dgv392e1CNV Complex17122850

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 607580    OMIM disorders: --


    Find genes that share disorders with SLC22A10           About GenesLikeMe


    Export disorders for SLC22A10 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SLC22A10 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with SLC22A10)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Isolation of a family of organic anion transporters from human liver and kidney. (PubMed id 11327718)1, 2, 3 Sun W.... Erion M.D. (Biochem. Biophys. Res. Commun. 2001)
    2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)1, 2 Taylor T.D....Sakaki Y. (Nature 2006)
    3. Novel human cDNAs homologous to Drosophila Orct and mammalian carnitine transporters. (PubMed id 12372408)1, 2 Eraly S.A. and Nigam S.K. (Biochem. Biophys. Res. Commun. 2002)
    4. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791)1 Wang A.G....Kim N.S. (Biochem. Biophys. Res. Commun. 2006)
    5. Identification and functional assessment of the novel murine organic anion transporter Oat5 (Slc22a19) expressed in kidney. (PubMed id 15068970)7 Youngblood G.L. and Sweet D.H. (Am. J. Physiol. Renal Physiol. 2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 387775 HGNC: 18057 AceView: LOC387775 Ensembl:ENSG00000184999 euGenes: HUgn387775
    ECgene: SLC22A10 H-InvDB: SLC22A10

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SLC22A10 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SLC22A10 gene:
    Search GeneIP for patents involving SLC22A10

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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