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Aliases for SLC17A2 Gene

Aliases for SLC17A2 Gene

  • Solute Carrier Family 17 Member 2 2 3 4 5
  • Sodium/Phosphate Cotransporter 3 3 4
  • Na(+)/PI Cotransporter 3 3 4
  • NPT3 3 4
  • Solute Carrier Family 17 (Vesicular Glutamate Transporter), Member 2 3
  • Solute Carrier Family 17 (Sodium Phosphate), Member 2 2
  • Sodium-Dependent Phosphate Transport Protein 3 3
  • Solute Carrier Family 17, Member 2 2
  • Sodium Phosphate Transporter 3 3

External Ids for SLC17A2 Gene

Previous GeneCards Identifiers for SLC17A2 Gene

  • GC06M025970
  • GC06M026020
  • GC06M025856

Summaries for SLC17A2 Gene

GeneCards Summary for SLC17A2 Gene

SLC17A2 (Solute Carrier Family 17 Member 2) is a Protein Coding gene. Among its related pathways are Osteoblast Signaling. GO annotations related to this gene include sodium:phosphate symporter activity. An important paralog of this gene is SLC17A4.

UniProtKB/Swiss-Prot for SLC17A2 Gene

  • May be involved in actively transporting phosphate into cells via Na(+) cotransport.

Additional gene information for SLC17A2 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC17A2 Gene

Genomics for SLC17A2 Gene

Regulatory Elements for SLC17A2 Gene

Enhancers for SLC17A2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H025865 0.8 ENCODE 11.7 +64.5 64509 0 HDAC1 LEF1 ATF1 TBL1XR1 TAL1 ETV1 JUN BACH1 ZNF175 CEBPG ENSG00000272462 SLC17A1 BTN3A2 SLC17A2 SLC17A4 SLC17A3 PIR39663
GH06H025958 1.3 ENCODE dbSUPER 0.3 -31.2 -31196 6 HDGF PKNOX1 SIN3A ARID4B FEZF1 YY1 ZNF207 SP3 SP5 REST ENSG00000272462 ZNF322 ABT1 GUSBP2 NUP50P2 TRIM38 HMGN4 BTN2A3P BTN3A2 BTN2A1
GH06H025952 0.7 ENCODE dbSUPER 0.3 -22.2 -22199 1 IKZF1 ZNF175 ID3 ENSG00000272462 TRIM38 SLC17A2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC17A2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC17A2 Gene

Chromosome:
6
Start:
25,912,754 bp from pter
End:
25,930,726 bp from pter
Size:
17,973 bases
Orientation:
Minus strand

Genomic View for SLC17A2 Gene

Genes around SLC17A2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC17A2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC17A2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC17A2 Gene

Proteins for SLC17A2 Gene

  • Protein details for SLC17A2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O00624-NPT3_HUMAN
    Recommended name:
    Sodium-dependent phosphate transport protein 3
    Protein Accession:
    O00624
    Secondary Accessions:
    • A6NK81
    • A6NLD6
    • Q5TB84
    • Q76P85

    Protein attributes for SLC17A2 Gene

    Size:
    439 amino acids
    Molecular mass:
    47277 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SLC17A2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC17A2 Gene

Post-translational modifications for SLC17A2 Gene

  • Glycosylation at Asn47, isoforms=2, 356, Asn68, and isoforms=2, 369
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for SLC17A2 Gene

Domains & Families for SLC17A2 Gene

Gene Families for SLC17A2 Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • Predicted membrane proteins
  • Transporters

Protein Domains for SLC17A2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC17A2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O00624

UniProtKB/Swiss-Prot:

NPT3_HUMAN :
  • Belongs to the major facilitator superfamily. Sodium/anion cotransporter family.
Family:
  • Belongs to the major facilitator superfamily. Sodium/anion cotransporter family.
genes like me logo Genes that share domains with SLC17A2: view

Function for SLC17A2 Gene

Molecular function for SLC17A2 Gene

GENATLAS Biochemistry:
solute carrier family 17 (sodium/phosphate cotransport) member 2,predominantly expressed in muscle and heart
UniProtKB/Swiss-Prot Function:
May be involved in actively transporting phosphate into cells via Na(+) cotransport.

Phenotypes From GWAS Catalog for SLC17A2 Gene

Gene Ontology (GO) - Molecular Function for SLC17A2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005436 sodium:phosphate symporter activity TAS 9149941
GO:0015293 symporter activity IEA --
genes like me logo Genes that share ontologies with SLC17A2: view
genes like me logo Genes that share phenotypes with SLC17A2: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SLC17A2

CRISPR Products

miRNA for SLC17A2 Gene

miRTarBase miRNAs that target SLC17A2

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for SLC17A2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC17A2 Gene

Localization for SLC17A2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC17A2 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC17A2 gene
Compartment Confidence
plasma membrane 5
endoplasmic reticulum 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SLC17A2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane TAS 9149941
GO:0016020 membrane TAS 9149941
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC17A2: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for SLC17A2 Gene

Pathways & Interactions for SLC17A2 Gene

SuperPathways for SLC17A2 Gene

SuperPathway Contained pathways
1 Osteoblast Signaling
genes like me logo Genes that share pathways with SLC17A2: view

Pathways by source for SLC17A2 Gene

1 BioSystems pathway for SLC17A2 Gene

Interacting Proteins for SLC17A2 Gene

Gene Ontology (GO) - Biological Process for SLC17A2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006796 phosphate-containing compound metabolic process TAS 9149941
GO:0006810 transport IEA --
GO:0006811 ion transport IEA --
GO:0006814 sodium ion transport TAS 9149941
GO:0035435 phosphate ion transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC17A2: view

No data available for SIGNOR curated interactions for SLC17A2 Gene

Drugs & Compounds for SLC17A2 Gene

(1) Additional Compounds for SLC17A2 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
sodium
  • Sodium
  • Sodium ion
7440-23-5
genes like me logo Genes that share compounds with SLC17A2: view

Transcripts for SLC17A2 Gene

mRNA/cDNA for SLC17A2 Gene

Unigene Clusters for SLC17A2 Gene

Solute carrier family 17 (sodium phosphate), member 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for SLC17A2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SLC17A2 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b
SP1: - -
SP2:
SP3: - -
SP4:
SP5: -

Relevant External Links for SLC17A2 Gene

GeneLoc Exon Structure for
SLC17A2
ECgene alternative splicing isoforms for
SLC17A2

Expression for SLC17A2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC17A2 Gene

mRNA differential expression in normal tissues according to GTEx for SLC17A2 Gene

This gene is overexpressed in Liver (x52.3).

Protein differential expression in normal tissues from HIPED for SLC17A2 Gene

This gene is overexpressed in Fetal Liver (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SLC17A2 Gene



Protein tissue co-expression partners for SLC17A2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SLC17A2 Gene:

SLC17A2

SOURCE GeneReport for Unigene cluster for SLC17A2 Gene:

Hs.591802

mRNA Expression by UniProt/SwissProt for SLC17A2 Gene:

O00624-NPT3_HUMAN
Tissue specificity: Expressed in the small intestine, kidney, spleen and testis. Not detected in fetal brain, bone marrow, and mammary gland.

Evidence on tissue expression from TISSUES for SLC17A2 Gene

  • Liver(4.4)
genes like me logo Genes that share expression patterns with SLC17A2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC17A2 Gene

Orthologs for SLC17A2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SLC17A2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC17A2 33 34
  • 98.98 (n)
dog
(Canis familiaris)
Mammalia LOC488255 33
  • 90.17 (n)
SLC17A2 34
  • 69 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SLC17A2 33 34
  • 89.96 (n)
mouse
(Mus musculus)
Mammalia Slc17a2 33 16 34
  • 85.94 (n)
rat
(Rattus norvegicus)
Mammalia Slc17a2 33
  • 85.64 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 48 (a)
ManyToMany
-- 34
  • 38 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 42 (a)
ManyToMany
-- 34
  • 35 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii CU929219.1 34
  • 29 (a)
OneToMany
Species where no ortholog for SLC17A2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SLC17A2 Gene

ENSEMBL:
Gene Tree for SLC17A2 (if available)
TreeFam:
Gene Tree for SLC17A2 (if available)

Paralogs for SLC17A2 Gene

Paralogs for SLC17A2 Gene

(7) SIMAP similar genes for SLC17A2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SLC17A2: view

Variants for SLC17A2 Gene

Sequence variations from dbSNP and Humsavar for SLC17A2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000080460 -- 25,913,069(+) CCCCG(G/T)GCGCA downstream-variant-500B, utr-variant-3-prime
rs1000144806 -- 25,930,520(+) ACCCA(A/G)AAAGA intron-variant, utr-variant-5-prime
rs1000327892 -- 25,925,861(+) TCTTT(C/T)ACTAC intron-variant, utr-variant-5-prime
rs1000443996 -- 25,926,247(+) AGACA(A/G)GACAA intron-variant, upstream-variant-2KB
rs1000603671 -- 25,932,495(+) AATTT(A/T)CCCAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SLC17A2 Gene

Variant ID Type Subtype PubMed ID
nsv1023453 CNV gain 25217958
nsv1124045 CNV deletion 24896259
nsv5229 CNV deletion 18451855

Variation tolerance for SLC17A2 Gene

Residual Variation Intolerance Score: 40.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.79; 33.82% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SLC17A2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC17A2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC17A2 Gene

Disorders for SLC17A2 Gene

Relevant External Links for SLC17A2

Genetic Association Database (GAD)
SLC17A2
Human Genome Epidemiology (HuGE) Navigator
SLC17A2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC17A2

No disorders were found for SLC17A2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC17A2 Gene

Publications for SLC17A2 Gene

  1. A 1.1-Mb transcript map of the hereditary hemochromatosis locus. (PMID: 9149941) Ruddy DA … Feder JN (Genome research 1997) 2 3 4 60
  2. Common polymorphisms influencing serum uric acid levels contribute to susceptibility to gout, but not to coronary artery disease. (PMID: 19890391) Stark K … Hengstenberg C (PloS one 2009) 3 45 60
  3. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 3 4 60
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  5. Genome-wide association study of serum iron phenotypes in premenopausal women of European descent. (PMID: 26852655) Koller DL … Foroud T (Blood cells, molecules & diseases 2016) 3 60

Products for SLC17A2 Gene

Sources for SLC17A2 Gene

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