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SLC16A13 Gene

protein-coding   GIFtS: 42
GCID: GC17P006939

Solute Carrier Family 16, Member 13

(Previous names: solute carrier family 16 (monocarboxylic acid transporters),...)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Solute Carrier Family 16, Member 131 2     MCT132 3
Solute Carrier Family 16 (Monocarboxylic Acid Transporters), Member 131 2     MCT 132 3
Monocarboxylic Acid Transporter 131 2     Monocarboxylate Transporter 132
Solute Carrier Family 16 Member 132 3     Solute Carrier Family 16, Member 13 (Monocarboxylic Acid Transporter 13)2

External Ids:    HGNC: 310371   Entrez Gene: 2012322   Ensembl: ENSG000001743277   UniProtKB: Q7RTY03   

Export aliases for SLC16A13 gene to outside databases

Previous GC identifers: GC17P007140 GC17P006882 GC17P006883


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SLC16A13 Gene:
SLC16A13 (solute carrier family 16, member 13) is a protein-coding gene. GO annotations related to this gene include symporter activity. An important paralog of this gene is SLC16A4.

UniProtKB/Swiss-Prot: MOT13_HUMAN, Q7RTY0
Function: Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of
many monocarboxylates (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000017.10  NC_018928.2  NT_010718.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the SLC16A13 gene promoter:
         E2F-4   E2F-3a   Spz1   Sp1   Nkx2-5   E2F-2   POU3F2   AREB6   E2F   E2F-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLC16A13 promoter sequence
   Search Chromatin IP Primers for SLC16A13

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SLC16A13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.1   Ensembl cytogenetic band:  17p13.1   HGNC cytogenetic band: 17p13.1

SLC16A13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC16A13 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P006939:  view genomic region     (about GC identifiers)

Start:
6,939,394 bp from pter      End:
6,943,440 bp from pter
Size:
4,047 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: MOT13_HUMAN, Q7RTY0 (See protein sequence)
Recommended Name: Monocarboxylate transporter 13  
Size: 426 amino acids; 44992 Da
Secondary accessions: A3KMG3 A5PKU5 Q2VP92

Explore the universe of human proteins at neXtProt for SLC16A13: NX_Q7RTY0

Explore proteomics data for SLC16A13 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See SLC16A13 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_963860.1  
    ENSEMBL proteins: 
     ENSP00000309751  

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    Cloud-Clone Corp. Proteins for SLC16A13

     
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    Cloud-Clone Corp. ELISAs for SLC16A13
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    Search eBioscience for ELISAs for SLC16A13 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    SLC: Solute carriers

    IUPHAR Guide to PHARMACOLOGY protein family classification: Monocarboxylate transporter 13
    SLC16 family of monocarboxylate transporters

    3 InterPro protein domains:
     IPR011701 MFS
     IPR020846 MFS_dom
     IPR016196 MFS_dom_general_subst_transpt

    Graphical View of Domain Structure for InterPro Entry Q7RTY0

    ProtoNet protein and cluster: Q7RTY0

    UniProtKB/Swiss-Prot: MOT13_HUMAN, Q7RTY0
    Similarity: Belongs to the major facilitator superfamily. Monocarboxylate porter (TC 2.A.1.13) family


    Find genes that share domains with SLC16A13           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: MOT13_HUMAN, Q7RTY0
    Function: Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of
    many monocarboxylates (By similarity)

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0015293symporter activity IEA--
         
    Find genes that share ontologies with SLC16A13           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for SLC16A13:
     Increased gamma-H2AX phosphory 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for SLC16A13
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for SLC16A13
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    miRNA
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    miRTarBase miRNAs that target SLC16A13:
    hsa-mir-1229-3p (MIRT036385)

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    6 qRT-PCR Assays for microRNAs that regulate SLC16A13:
    hsa-miR-124 hsa-miR-1271 hsa-miR-506 hsa-miR-1827 hsa-miR-96 hsa-miR-3714
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC16A13


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    MOT13_HUMAN, Q7RTY0: Golgi apparatus membrane; Multi-pass membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5
    endoplasmic reticulum1

    Gene Ontology (GO): 4 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000139Golgi membrane IEA--
    GO:0005794Golgi apparatus IDA--
    GO:0005886plasma membrane ----
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with SLC16A13           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SLC16A13
    Interactions:

        Search GeneGlobe Interaction Network for SLC16A13

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for SLC16A13 (ENSP000003097514) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0055085transmembrane transport ----

    Find genes that share ontologies with SLC16A13           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SLC16A13 (MOT13)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SLC16A13 gene: 
    NM_201566.2  

    Unigene Cluster for SLC16A13:

    Solute carrier family 16, member 13 (monocarboxylic acid transporter 13)
    Hs.448010  [show with all ESTs]
    Unigene Representative Sequence: BC142618
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000308027(uc002geh.3) ENST00000575844
    miRNA
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    hsa-miR-124 hsa-miR-1271 hsa-miR-506 hsa-miR-1827 hsa-miR-96 hsa-miR-3714
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    GenScript: all cDNA clones in your preferred vector: SLC16A13 (NM_201566)
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      QuantiFast Probe-based Assays in human, mouse, rat SLC16A13

    Additional mRNA sequence: 

    BC109286.1 BC131739.1 BC142618.1 

    1 DOTS entry:

    DT.91833624 

    4 AceView cDNA sequences:

    BU538223 BE075065 BN000145 NM_201566 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SLC16A13 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCCCCTTCCT
    SLC16A13 Expression
    About this image


    SLC16A13 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 3) fully expand
     
     Limb (Muscoskeletal System)
             Prechondrocytic Mesenchymal Cells Zeugopod
     
     Bone (Muscoskeletal System)
             Prechondrocytic Mesenchymal Cells Zeugopod
     
     Cartilage (Muscoskeletal System)
             Prechondrocytic Mesenchymal Cells Zeugopod
    SLC16A13 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SLC16A13 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.448010
        Custom PCR Arrays for SLC16A13
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC16A13

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for SLC16A13 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Slc16a131 , 5 solute carrier family 16 (monocarboxylic acid transporters), more1, 5 88.18(n)1
    87.32(a)1
      11 (42.99 cM)5
    693091  NM_172371.31  NP_758959.11 
     702167895 
    chicken
    (Gallus gallus)
    Aves SLC16A136
    solute carrier family 16, member 13
    44(a)
    1 ↔ 1
    JH375607.1(3615-6310)
    lizard
    (Anolis carolinensis)
    Reptilia SLC16A136
    solute carrier family 16, member 13
    53(a)
    1 ↔ 1
    GL344632.1(4205-12858)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia slc16a131 solute carrier family 16, member 13 58.95(n)
    54.24(a)
      100038279  NM_001097393.1  NP_001090862.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC7932101 monocarboxylate transporter 13-like 57.99(n)
    55.41(a)
      793210  XM_001920215.3  XP_001920250.2 


    ENSEMBL Gene Tree for SLC16A13 (if available)
    TreeFam Gene Tree for SLC16A13 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for SLC16A13 gene
    SLC16A42  SLC16A32  SLC16A52  SLC16A112  SLC16A62  SLC16A82  SLC16A142  SLC16A72  
    SLC16A12  SLC16A122  SLC16A92  
    9 SIMAP similar genes for SLC16A13 using alignment to 1 protein entry:     MOT13_HUMAN:
    SLC16A11    SLC16A7    SLC16A3    SLC16A12    SLC16A5    SLC16A1
    SLC16A2    SLC16A8    SLC16A6

    Find genes that share paralogs with SLC16A13           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SLC16A13 (see all 230)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1866034841,2
    --6937439(+) GAGGTA/GGAGGT 1 -- us2k10--------
    rs99054761,2
    C--6937447(+) ggtcgC/Tagtga 1 -- us2k11Minor allele frequency- T:0.50WA 2
    rs1469989831,2
    C--6937469(+) GCCATC/TGCACT 1 -- us2k10--------
    rs29204271,2
    C--6937512(+) caaaaA/Caaaaa 1 -- us2k13Minor allele frequency- C:0.17NA 6
    rs58191341,2
    C,H--6937527(+) aaaacA/Caaaaa 1 -- us2k1 trp31Minor allele frequency- C:0.00NA 2
    rs3712994891,2
    C--6937527(+) aaaac-/Aaaaaa 1 -- us2k10--------
    rs50177261,2
    C,F--6937537(+) aaaaaC/ACACTA 1 -- us2k1 trp34Minor allele frequency- A:0.25NA WA CSA 8
    rs129391581,2
    A--6937540(+) aaaCAA/CTAAAC 1 -- us2k10--------
    rs560067121,2
    C,F--6937646(+) CATGTC/TAGCAC 1 -- us2k12Minor allele frequency- T:0.05WA 120
    rs1435979401,2
    C--6937816(+) AGGCAC/TGGTGG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for SLC16A13 (6939394 - 6943440 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for SLC16A13:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv1405948CNV Deletion17803354
    esv2672389CNV Deletion23128226
    esv2422288CNV Deletion17116639
    esv2715594CNV Deletion23290073
    esv2665042CNV Deletion23128226
    nsv512475CNV Loss21212237
    nsv457659CNV Loss19166990
    nsv907634CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    UniProtKB/Swiss-Prot: MOT13_HUMAN, Q7RTY0
  • Diabetes mellitus, non-insulin-dependent (NIDDM) [MIM:125853]: A multifactorial disorder of glucose
    homeostasis caused by a lack of sensitivity to the body's own insulin. Affected individuals usually have an obese
    body habitus and manifestations of a metabolic syndrome characterized by diabetes, insulin resistance,
    hypertension and hypertriglyceridemia. The disease results in long-term complications that affect the eyes,
    kidneys, nerves, and blood vessels. Note=Disease susceptibility is associated with variations affecting the gene
    represented in this entry


  • Find genes that share disorders with SLC16A13           About GenesLikeMe


    Export disorders for SLC16A13 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SLC16A13 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with SLC16A13)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The SLC16 gene family-from monocarboxylate transporters (MCTs) to aromatic amino acid transporters and beyond. (PubMed id 12739169)1, 2 Halestrap A.P. and Meredith D. (Pflugers Arch. 2004)
    2. Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. (PubMed id 24390345)2  ....Altshuler D. (Nature 2014)
    3. Genome-wide association study identifies three novel loci for type 2 diabetes. (PubMed id 23945395)1 Hara K....Kadowaki T. (Hum. Mol. Genet. 2014)
    4. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    5. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    8. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 201232 HGNC: 31037 AceView: SLC16A13 Ensembl:ENSG00000174327 euGenes: HUgn201232
    ECgene: SLC16A13 H-InvDB: SLC16A13

    (According to HUGE)
    About This Section

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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SLC16A13 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SLC16A13 gene:
    Search GeneIP for patents involving SLC16A13

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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