SLC16A1 Gene
protein-coding GIFtS : 60
GC01M113255
solute carrier family 16, member 1 (monocarboxylic acid transporter 1) (Previous names: solute carrier family 16 (monocarboxylic acid transporters), member 1 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for SLC16A1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ36745 2 HHF7 2 , 5 MCT 1 , 2 MCT1 1 , 2 , 3 , 5 MGC44475 2 OTTHUMP00000013960 2
Descriptions MCT 1 3 Solute carrier family 16 member 1 3 monocarboxylate transporter 1 2 solute carrier family 16 (monocarboxylic acid transporters), member 1 1 , 2 solute carrier family 16, member 1 2 solute carrier family 16, member 1 (monocarboxylic acid transporter 1) 2
Search outside databases for aliases for SLC16A1 genePrevious GC identifers: GC01M113870 GC01M112339 GC01M112557 GC01M112753 GC01M113166
Summaries for SLC16A1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for SLC16A1 : The SLC16A1 gene encodes a monocarboxylate transporter (MCT1) that mediates the movement of lactateand pyruvate across cell membranes Import and export of these substrates by tissues such aserythrocytes, muscle, intestine, and kidney are ascribed largely to the action of a proton-coupledMCT (Garcia et al., 1994 [PubMed 8124722]).[supplied by OMIM] UniProtKB/Swiss-Prot: MOT1_HUMAN, P53985 Function : Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across theplasma membrane of many monocarboxylates such as lactate, pyruvate, branched-chain oxo acidsderived from leucine, valine and isoleucine, and the ketone bodies acetoacetate,beta-hydroxybutyrate and acetate
Gene Wiki entry for SLC16A1
Genomic Location for SLC16A1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SLC16A1 gene Entrez Gene cytogenetic band: 1p12 Ensembl cytogenetic band: 1p13.2 HGNC cytogenetic band: 1p12 SLC16A1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M113255:
(about GC identifiers )
Start:
113,255,992 bp from pter
End:
113,300,498 bp from pter
Size:
44,507 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_019273.18 Proteins for SLC16A1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: MOT1_HUMAN, P53985 (See
protein sequence )Recommended Name: Monocarboxylate transporter 1 Size : 500 amino acids; 53958 Da
Subcellular location : Cell membrane; Multi-pass membrane protein
Secondary accessions : Q9NSJ9
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_003042.3 ENSEMBL proteins: ENSP00000358640 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for SLC16A1: Assays for SLC16A1:
Protein
Domains/ Families for SLC16A1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P53985 ProtoNet protein and cluster: P53985
UniProtKB/Swiss-Prot: MOT1_HUMAN, P53985 Similarity : Belongs to the major facilitator superfamily. Monocarboxylate porter (TC 2.A.1.13)family
Gene Function for SLC16A1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003051 Applied Biosystems Silencer ® siRNAs for SLC16A1 Sigma-Aldrich siRNA and siRNA Panels for SLC16A1 Sigma-Aldrich shRNA for SLC16A1 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003051                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003051                                  untagged cDNA clone in CMV expression vector: NM_003051  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003051 UniProtKB/Swiss-Prot: MOT1_HUMAN, P53985 Function : Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across theplasma membrane of many monocarboxylates such as lactate, pyruvate, branched-chain oxo acidsderived from leucine, valine and isoleucine, and the ketone bodies acetoacetate,beta-hydroxybutyrate and acetate
Genatlas biochemistry entry for SLC16A1 :solute carrier family 16,member A1,monocarboxylic acids transporter,mediating movement of lactateand pyruvate across membranes 4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for SLC16A1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for SLC16A1 5/8 Interacting proteins for SLC16A1 (P53985 1 ENSP00000358640 3 ) via UniProtKB, MINT, and/or STRING (see all 8
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for SLC16A1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SLC16A1 10/17 Novoseek chemical compound relationships for SLC16A1 gene (see all 17
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
alpha-cyano-4-hydroxycinnamate
92.65
11
10918994 (1), 15548847 (1), 19033663 (1), 9447934 (1) (see all 7 )
m-coumaric acid
73.74
3
15479001 (2), 15113150 (1)
3-(3-hydroxyphenyl)propionic acid
73.47
4
15479001 (2), 15113150 (1)
pyruvate
69.67
18
16604139 (2), 12739169 (1), 17701893 (1), 18481946 (1) (see all 14 )
dids
59.01
2
10918994 (1), 15135232 (1)
bicarbonate
41.39
3
16575022 (1), 12400867 (1), 16269908 (1)
gallic acid
40.22
2
15941309 (1)
beta-hydroxybutyrate
37.85
2
17182800 (1)
glucose
33.56
24
16423989 (2), 19033652 (2), 14724187 (1), 11272148 (1) (see all 14 )
sodium
10.34
2
18761711 (1)
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Transcripts for SLC16A1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003051 Sigma-Aldrich siRNA and siRNA Panels for SLC16A1 Sigma-Aldrich shRNA for SLC16A1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003051
REFSEQ mRNAs for SLC16A1 gene: NM_003051.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003051
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003051                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003051                                  untagged cDNA clone in CMV expression vector: NM_003051  
Additional cDNA sequence: AF239919.1 AJ438942.2 AJ438943.2 AK000641.1 AK094064.1 AK296688.1 AK303603.1 AK312500.1 AL162079.1 BC026317.1 BC045664.1 CR602423.1 CR624057.1 L31801.1
16 DOTS entries : DT.447811 DT.95200772 DT.95200753 DT.95212264 DT.99979497 DT.100745133 DT.92445931 DT.100818409 DT.121379026 DT.91800069 DT.95316005 DT.102829853 DT.121379090 DT.95220730 DT.91937485 DT.91968405
24/345 AceView cDNA sequences (see all 345
):AL559409 X85566 AA436446 AU132155 BM458323 AA367362 BM542763 AI565092 L31801 AU132502 AK094064 BQ379923 AA477683 BF957742 AU123636 CA426348 CB132987 CB270411 AI656300 AW614387 AA649196 AL162079 AI361209 AJ438943
highest scoring ESTs for SLC16A1 :AA206115 AA224459 AA307080 AA355865 AA376008 AI129459 AI984711 AL162079 AU123845 AU129977
Unigene Cluster for SLC16A1: Solute carrier family 16, member 1 (monocarboxylic acid transporter 1) Hs.75231 [show with all ESTs ] Unigene Representative Sequence: NM_003051 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for SLC16A1 ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 SP1 :                   SP2 :                   SP3 :     -              
About this scheme ECgene alternative splicing isoforms for SLC16A1 1 Ensembl transcript including schematic representation : ENST00000369626
Expression for SLC16A1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SLC16A1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SLC16A1 1 / 2 / 3
12 probe-sets matching SLC16A1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAATATATTTSOURCE GeneReport for Unigene cluster: Hs.75231 Expression variation in blood from EXPOLDB for SLC16A1
UniProtKB/Swiss-Prot: MOT1_HUMAN, P53985 Tissue specificity : Widely expressed in normal and in cancer cells
Orthologs for SLC16A1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SLC16A1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for SLC16A1 ENSEMBL Gene Tree for SLC16A1 Paralogs for SLC16A1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SLC16A1 gene SLC16A7 2 Pseudogenes 1 related pseudogene
SNPs/Variants for SLC16A1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SLC16A1 (up to first 250kb)
Disorders & Mutations for SLC16A1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600682 disorders : 245340 610021 UniProtKB/Swiss-Prot: MOT1_HUMAN, P53985
Defects in SLC16A1 are the cause of symptomatic deficiency in lactate transport (SDLT)[MIM:245340]; also known as erythrocyte lactate transporter defect. Deficiency of lactatetransporter may result in an acidic intracellular environment created by muscle activity withconsequent degeneration of muscle and release of myoglobin and creatine kinase. This defect mightcompromise extreme performance in otherwise healthy individuals Defects in SLC16A1 are the cause of familial hyperinsulinemic hypoglycemia type 7 (HHF7)[MIM:610021]; also known as exercise-induced hyperinsulinemic hypoglycemia. HHF7 is a dominantlyinherited hypoglycemic disorder characterized by inappropriate insulin secretion during anaerobicexercise or on pyruvate load
10 Novoseek disease relationships for SLC16A1 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
acidosis
24.88
2
12400867 (1), 16269908 (1)
colon cancer
20.90
4
16042588 (2), 16405400 (1)
hypoglycemia
14.39
2
17701893 (2)
necrosis
0.00
3
15574223 (1), 10774612 (1)
melanoma
0.00
1
18778892 (1)
cancer
0.00
12
19033652 (3), 9786900 (1), 16423989 (1)
glioma
0.00
1
11277580 (1)
carcinoma
0.00
2
11953883 (2)
tumors
0.00
12
12479094 (2), 16136905 (2), 18778892 (1), 19033652 (1) (see all 6 )
adenocarcinoma
0.00
6
16423989 (1), 17760565 (1), 14525727 (1)
About this table Human Gene Mutation Database : SLC16A1
Medical News for SLC16A1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SLC16A1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/155 PubMed articles for SLC16A1 gene (see all 155
): cDNA cloning of the human monocarboxylate transporter 1 and chromosomal localization of the SLC16A1 locus to 1p13.2-p12. (PubMed id 7835905) 1, 2, 3, 4 Garcia C.K....Francke U. (1994) Physical exercise-induced hypoglycemia caused by failed silencing of monocarboxylate transporter 1 in pancreatic beta cells. (PubMed id 17701893) 1, 3, 4 Otonkoski T....Kere J. (2007) Molecular characterization of a membrane transporter for lactate, pyruvate, and other monocarboxylates: implications for the Cori cycle. (PubMed id 8124722) 1, 2, 3 Garcia C.K....Brown M.S. (1994) Mutations in MCT1 cDNA in patients with symptomatic deficiency in lactate transport. (PubMed id 10590411) 1, 3, 4 Merezhinskaya N.... Foellmer J.W. (2000) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Substrate-induced regulation of the human colonic monocarboxylate transporter, MCT1. (PubMed id 11882670) 1, 3 Cuff M.A....Shirazi-Beechey S.P. (2002) PKC-dependent stimulation of the human MCT1 promoter involves transcription factor AP2. (PubMed id 19033536) 1, 3 Saksena S....Dudeja P.K. (2009) The human monocarboxylate transporter, MCT1: genomic organization and promoter analysis. (PubMed id 11944921) 1, 3 Cuff M.A. and Shirazi-Beechey S.P. (2002) The expression of lactate transporters (MCT1 and MCT4) in heart and muscle. (PubMed id 11820324) 1, 3 Bonen A. (2001)
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Genome Databases showing SLC16A1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SLC16A1
(According to HUGE )
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Specialized Databases showing SLC16A1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for SLC16A1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009