Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SLC12A5-AS1 Gene

Subcategory (RNA class) for SLC12A5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC12A5-AS1 Gene

  • SLC12A5 And MMP9 Antisense RNA 1 2 3 5
  • RP11-465L10.10 3

External Ids for SLC12A5-AS1 Gene

Summaries for SLC12A5-AS1 Gene

GeneCards Summary for SLC12A5-AS1 Gene

SLC12A5-AS1 (SLC12A5 And MMP9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SLC12A5-AS1 include Aortic Aneurysm, Familial Thoracic 1.

Additional gene information for SLC12A5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC12A5-AS1 Gene

Genomics for SLC12A5-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC12A5-AS1 Gene

Promoters and enhancers for SLC12A5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I046021 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 +0.3 331 1.3 PKNOX1 ATF1 ARID4B SIN3A ZNF2 ZNF48 GLIS2 ZNF143 ATF7 KLF13 SLC12A5 SLC12A5-AS1 LOC105372632 CD40 PCIF1 ZNF334 NCOA5 SYS1
GH20I046022 Enhancer 0.7 ENCODE 550.8 -0.7 -744 0.1 CTCF CHD4 NFXL1 ZIC2 ZNF335 GLIS2 ZNF366 ZNF143 ZNF444 EGR2 SLC12A5 SLC12A5-AS1 LOC105372632
GH20I046023 Enhancer 0.7 ENCODE 550.8 -1.0 -1004 0.2 CTCF CHD4 NFXL1 RAD21 ZNF335 ZNF366 ZNF143 ZNF444 EGR2 ZNF263 LOC105372632 SLC12A5 SLC12A5-AS1 NCOA5
GH20I046024 Enhancer 0.6 ENCODE 550.8 -0.5 -454 0.1 NR2F1 ZNF76 SIN3A REST ZNF335 GLIS2 IKZF1 ZNF524 WT1 NR2C2 LOC105372632 SLC12A5 SLC12A5-AS1 PLTP
GH20I045909 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 14.8 +111.1 111116 3.7 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 PLTP SLC12A5-AS1 ACOT8 ZSWIM3 SNX21 TNNC2 UBE2C WFDC3 DNTTIP1 SLC12A5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC12A5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC12A5-AS1 Gene

Genomic Locations for SLC12A5-AS1 Gene
chr20:46,013,500-46,022,073
(GRCh38/hg38)
Size:
8,574 bases
Orientation:
Minus strand
chr20:44,642,139-44,650,712
(GRCh37/hg19)

Genomic View for SLC12A5-AS1 Gene

Genes around SLC12A5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC12A5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC12A5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SLC12A5-AS1 Gene

Proteins for SLC12A5-AS1 Gene

Post-translational modifications for SLC12A5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC12A5-AS1 Gene

Domains & Families for SLC12A5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC12A5-AS1 Gene

Function for SLC12A5-AS1 Gene

Phenotypes From GWAS Catalog for SLC12A5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC12A5-AS1 Gene

Localization for SLC12A5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC12A5-AS1 Gene

Pathways & Interactions for SLC12A5-AS1 Gene

SuperPathways for SLC12A5-AS1 Gene

No Data Available

Interacting Proteins for SLC12A5-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC12A5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC12A5-AS1 Gene

Drugs & Compounds for SLC12A5-AS1 Gene

No Compound Related Data Available

Transcripts for SLC12A5-AS1 Gene

mRNA/cDNA for SLC12A5-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC12A5-AS1 Gene

No ASD Table

Relevant External Links for SLC12A5-AS1 Gene

GeneLoc Exon Structure for
SLC12A5-AS1
ECgene alternative splicing isoforms for
SLC12A5-AS1

Expression for SLC12A5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC12A5-AS1 Gene

Orthologs for SLC12A5-AS1 Gene

Evolution for SLC12A5-AS1 Gene

ENSEMBL:
Gene Tree for SLC12A5-AS1 (if available)
TreeFam:
Gene Tree for SLC12A5-AS1 (if available)

No data available for Orthologs for SLC12A5-AS1 Gene

Paralogs for SLC12A5-AS1 Gene

No data available for Paralogs for SLC12A5-AS1 Gene

Variants for SLC12A5-AS1 Gene

Additional Variant Information for SLC12A5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC12A5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC12A5-AS1 Gene

Disorders for SLC12A5-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SLC12A5-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
aortic aneurysm, familial thoracic 1
  • aat1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SLC12A5-AS1

genes like me logo Genes that share disorders with SLC12A5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC12A5-AS1 Gene

Publications for SLC12A5-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 58

Products for SLC12A5-AS1 Gene

Sources for SLC12A5-AS1 Gene

Content
Loading form....