Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SLC12A5-AS1 Gene

Subcategory (RNA class) for SLC12A5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC12A5-AS1 Gene

  • SLC12A5 And MMP9 Antisense RNA 1 2 3 5
  • RP11-465L10.10 3

External Ids for SLC12A5-AS1 Gene

Summaries for SLC12A5-AS1 Gene

GeneCards Summary for SLC12A5-AS1 Gene

SLC12A5-AS1 (SLC12A5 And MMP9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLC12A5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC12A5-AS1 Gene

Genomics for SLC12A5-AS1 Gene

Regulatory Elements for SLC12A5-AS1 Gene

Enhancers for SLC12A5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H046111 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -89.3 -89304 0.8 HDGF PKNOX1 TBL1XR1 BMI1 YBX1 ZNF366 ZNF207 ATF7 ETV6 RUNX3 CD40 NCOA5 PCIF1 SLC12A5-AS1 SLC12A5 ZNF663P SYS1 NEURL2 ZNF335 GC20P046113
GH20H045909 1.3 ENCODE dbSUPER 14.8 +111.1 111117 3.7 HDGF PKNOX1 MLX ZFP64 ARID4B DMAP1 YY1 ZNF766 SP3 SP5 PLTP SLC12A5-AS1 ACOT8 ZSWIM3 SNX21 TNNC2 UBE2C DNTTIP1 WFDC3 SLC12A5
GH20H045998 1.3 FANTOM5 Ensembl ENCODE 12.3 +23.3 23306 1 CTCF PKNOX1 MAX POLR2A IKZF1 NBN MYC RUNX3 SPI1 SLC12A5 SLC12A5-AS1 NCOA5 ZNF335 CD40 PLTP PCIF1 MMP9 FTLP1
GH20H046107 1.4 FANTOM5 ENCODE dbSUPER 11 -86.5 -86450 1.3 CTCF EBF1 BATF RAD21 RELA POLR2A EED SMC3 ZNF143 ATF7 CD40 SPATA25 SLC12A5 SLC12A5-AS1 WFDC3 RPL13P2 SLC35C2 ZNF335 GC20P046113
GH20H046361 1.4 ENCODE dbSUPER 10.3 -342.1 -342078 6 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF143 CD40 PCIF1 NCOA5 SLC12A5-AS1 SLC12A5 ELMO2 SLC35C2 PIR48117
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC12A5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SLC12A5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000137744 73 801 PKNOX1 ATF1 ARID4B ZNF2 GLIS2 ZNF143 ATF7 SP3 TSHZ1 ZNF610

Genomic Locations for SLC12A5-AS1 Gene

Genomic Locations for SLC12A5-AS1 Gene
chr20:46,013,500-46,022,073
(GRCh38/hg38)
Size:
8,574 bases
Orientation:
Minus strand
chr20:44,642,139-44,650,712
(GRCh37/hg19)

Genomic View for SLC12A5-AS1 Gene

Genes around SLC12A5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC12A5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC12A5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SLC12A5-AS1 Gene

Proteins for SLC12A5-AS1 Gene

Post-translational modifications for SLC12A5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC12A5-AS1 Gene

Domains & Families for SLC12A5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC12A5-AS1 Gene

Function for SLC12A5-AS1 Gene

Phenotypes From GWAS Catalog for SLC12A5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC12A5-AS1 Gene

Localization for SLC12A5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC12A5-AS1 Gene

Pathways & Interactions for SLC12A5-AS1 Gene

SuperPathways for SLC12A5-AS1 Gene

No Data Available

Interacting Proteins for SLC12A5-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC12A5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC12A5-AS1 Gene

Drugs & Compounds for SLC12A5-AS1 Gene

No Compound Related Data Available

Transcripts for SLC12A5-AS1 Gene

mRNA/cDNA for SLC12A5-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC12A5-AS1 Gene

No ASD Table

Relevant External Links for SLC12A5-AS1 Gene

GeneLoc Exon Structure for
SLC12A5-AS1
ECgene alternative splicing isoforms for
SLC12A5-AS1

Expression for SLC12A5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC12A5-AS1 Gene

Orthologs for SLC12A5-AS1 Gene

Evolution for SLC12A5-AS1 Gene

ENSEMBL:
Gene Tree for SLC12A5-AS1 (if available)
TreeFam:
Gene Tree for SLC12A5-AS1 (if available)

No data available for Orthologs for SLC12A5-AS1 Gene

Paralogs for SLC12A5-AS1 Gene

No data available for Paralogs for SLC12A5-AS1 Gene

Variants for SLC12A5-AS1 Gene

Relevant External Links for SLC12A5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC12A5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC12A5-AS1 Gene

Disorders for SLC12A5-AS1 Gene

Relevant External Links for SLC12A5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC12A5-AS1

No disorders were found for SLC12A5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC12A5-AS1 Gene

Publications for SLC12A5-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 60

Products for SLC12A5-AS1 Gene

Sources for SLC12A5-AS1 Gene

Content
Loading form....