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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

SLAMF9 Gene

protein-coding GIFtS: 44
GCID: GC01M159923

SLAM family member 9

Search for SLAMF9
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
SLAM Family Member 9¹ ²		CD84 Homolog 1² ³
CD2F-10¹ ² ³		CD84H1²
CD84-H1¹ ² ³		Cluster Of Differentiation 2 Antigen Family Member 10²
SF2001¹ ²		Cluster Of Differentiation 84 Homolog 1²
CD2F10² ³		Signaling Lymphocytic Activation Molecule Family Member 2001²
CD2 Family Member 10² ³		Signaling Lymphocytic Activation Molecule Family Member 9²

External Ids:	HGNC: 18430¹	Entrez Gene: 89886²	Ensembl: ENSG00000162723⁷	OMIM: 608589⁵	UniProtKB: Q96A28³

Export aliases for SLAMF9 gene to outside databases

Previous GC identifers: GC01M157138 GC01M156734 GC01M158187 GC01M131277

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for SLAMF9:

This gene encodes a member of the signaling lymphocytic activation molecule family. The encoded protein is a cell

surface molecule that consists of two extracellular immunoglobulin domains, a transmembrane domain and a short

cytoplasmic tail that lacks the signal transduction motifs found in other family members. Alternative splicing results

in multiple transcript variants.(provided by RefSeq, Apr 2009)

UniProtKB/Swiss-Prot: SLAF9_HUMAN, Q96A28

Function: May play a role in the immune response

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000001.10 NC_018912.1 NT_004487.19

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the SLAMF9 gene promoter:
Sox5 LHX3b/Lhx3b AML1a HNF-3beta Arnt Nkx6-1 USF-1 LHX3a/Lhx3a RSRFC4
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: SLAMF9 promoter sequence

Search SABiosciences Chromatin IP Primers for SLAMF9

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLAMF9

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q23.2 Ensembl cytogenetic band: 1q23.2 HGNC cytogenetic band: 1q23.1

SLAMF9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLAMF9 gene location

GeneLoc information about chromosome 1 GeneLoc Exon Structure

GeneLoc location for GC01M159923: view genomic region (about GC identifiers)

Start:	159,921,282 bp from pter	End:	159,924,044 bp from pter
Size:	2,763 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SLAF9_HUMAN, Q96A28 (See protein sequence)

Recommended Name: SLAM family member 9 precursor

Size: 289 amino acids; 32436 Da

Subcellular location: Membrane; Single-pass type I membrane protein

Secondary accessions: Q5JRQ9 Q5JRR0 Q6UWG1

Alternative splicing: 2 isoforms: Q96A28-1 Q96A28-2

Explore the universe of human proteins at neXtProt for SLAMF9: NX_Q96A28

SLAMF9 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (3 alternative transcripts):

NP_001139644.1 NP_001139645.1 NP_254273.2

ENSEMBL proteins:

ENSP00000357072 ENSP00000357071

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0016021	integral to membrane	IEA	--

SLAMF9 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

SLAMF9 for domains About GeneDecksing

5 InterPro domains/families:

IPR007110 Ig-like_dom

IPR003599 Ig_sub

IPR015631 SLAM_fam_rcpts

IPR013783 Ig-like_fold

IPR013106 Ig_V-set

Graphical View of Domain Structure for InterPro Entry Q96A28

ProtoNet protein and cluster: Q96A28

1 Blocks protein family: IPB003599 Immunoglobulin subtype

UniProtKB/Swiss-Prot: SLAF9_HUMAN, Q96A28

Similarity: Contains 1 Ig-like C2-type (immunoglobulin-like) domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: SLAF9_HUMAN, Q96A28

Function: May play a role in the immune response

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Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004872	receptor activity	IEA	--

SLAMF9 for ontologies           About GeneDecksing

Animal Models:
     Mouse knock-out Slamf9^tm1Lex for SLAMF9
     1 MGI phenotypic allele

for Slamf9 (no phenotypes)

SLAMF9 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for SLAMF9

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for SLAMF9
Search CenterWatch for drugs/clinical trials and news about SLAMF9 / SLAF9

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for SLAMF9 gene (3 alternative transcripts):

NM_001146172.1 NM_001146173.1 NM_033438.3

Unigene Cluster for SLAMF9:

SLAM family member 9

Hs.661712 [show with all ESTs]

Unigene Representative Sequence: NM_033438

4 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000368093(uc001fus.3 uc009wtd.3 uc001fut.3) ENST00000368092

ENST00000489098 ENST00000466773

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Additional cDNA sequence:

AF275725.1 AY034613.1 AY358801.1 BC070213.1 BC074754.2

2 DOTS entries:

DT.444124 DT.95310123

18 AceView cDNA sequences:

AA298781 NM_033438 AA298785 AA446344 AA612751 CA418800 CD639596 BC074754

AY034613 CB528634 AY358801 AA446524 BC070213 AA298784 AA298780 AF275725

AA381170 BX280679

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for SLAMF9 About this scheme

ExUns:	1a	·	1b	·	1c	^	2a	·	2b	^	3	^	4a	·	4b	·	4c
SP1:
SP2:											-
SP3:									-		-

ECgene alternative splicing isoforms for SLAMF9

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

SLAMF9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGAAACAGAA

About this image

SLAMF9 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

TGF?3+BMP7-induced chondrocytes (Chondrogenic HyStem+...)

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See SLAMF9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SLAMF9

SOURCE GeneReport for Unigene cluster: Hs.661712

UniProtKB/Swiss-Prot: SLAF9_HUMAN, Q96A28

Tissue specificity: Expression is predominantly restricted in hematopoietic tissues. Expressed in heart, spleen, liver,

intestine, muscle and testis. Expressed in immune cells, including monocytes, dendritic, B- and T-cells. No expression

was seen in peripheral blood leukocytes. Expressed in the leukocyte cell line THP-1

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for SLAMF9 gene from 1/7 species (see all 7) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	LY9⁶	--	22(a)	1 → many	25(1373488-1374310)

ENSEMBL Gene Tree for SLAMF9 (if available)
TreeFam Gene Tree for SLAMF9 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for SLAMF9 gene

SLAMF7² SLAMF6² CD84² LY9²

3 SIMAP similar genes for SLAMF9 using alignment to 2 protein entries: SLAF9_HUMAN (see all proteins):

LY9 SLAMF7 CD84

SLAMF9 for paralogs About GeneDecksing

2 Pseudogenes.org Pseudogenes for SLAMF9
PGOHUM00000244308 PGOHUM00000244309

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 1 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs117745100^1,2	F,	--	159920800(+)	`GAGAGG/ATTGCG`	3	--	ds500¹		1		EA	120
rs2789419^1,2	C,F,A,H,	--	159920826(-)	`GACCTT/ACCCTG`	3	--	ds500¹		11		NS EA NA WA	784
rs137992173^1,2		--	159920873(+)	`CTTCTA/GGACTA`	3	--	ds500¹		0	--	--	--	--
rs149504363^1,2		--	159921050(+)	`CTTATC/TTGATG`	3	--	ds500¹		0	--	--	--	--
rs184005867^1,2		--	159921299(+)	`AATTTA/GACTTT`	3	--	ut3¹		0	--	--	--	--
rs148110395^1,2		--	159921319(+)	`CAGTCC/TTCCCT`	3	--	ut3¹		0	--	--	--	--
rs141914707^1,2	C,	--	159921420(+)	`GAAACC/TAAGCT`	3	--	ut3¹		0	--	--	--	--
rs189527068^1,2	C,	--	159921445(+)	`CCAAGA/GAGCAG`	3	--	ut3¹		0	--	--	--	--
rs147232415^1,2	C,	--	159921536(+)	`TGTGTA/CTTTTC`	5	R I	mis¹ ut3¹		0	--	--	--	--
rs146934418^1,2	C,F	--	159921537(+)	`GTGTCT/GTTTCT`	5	/R	ut3¹ syn¹		2		NA EU	5875

HapMap Linkage Disequilibrium report for SLAMF9 (159921282 - 159924044 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for SLAMF9: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

SLAMF9 for disorders About MalaCards

SLAMF9 for disorders About GeneDecksing

OMIM gene information: 608589 OMIM disorders: --

Export disorders for SLAMF9 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for SLAMF9 gene integrated from 9 sources:
(articles sorted by number of sources associating them with SLAMF9)

Utopia: connect your pdf to the dynamic
world of online information

CD2F-10: a new member of the CD2 subset of the immunoglobulin superfamily. (PubMed id 11685473)^{1, 2, 3} Fennelly J.A.... Evans E.J. (2001)
The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)^{1, 2} Gregory S.G.... Bentley D.R. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)^{1, 2} Clark H.F.... Gray A.M. (2003)
Genetic approach to insight into the immunobiology of human dendritic cells and identification of CD84-H1, a novel CD84 homologue. (PubMed id 11300479)^{1, 2} Zhang W.... Cao X. (2001)
The SLAM and SAP gene families control innate and adaptive immune responses. (PubMed id 18501771)¹ Calpe S....Terhorst C. (2008)
Identification and characterization of SF2000 and SF2001, two new members of the immune receptor SLAM/CD2 family. (PubMed id 11862385)¹ Fraser C.C....Terhorst C. (2002)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 89886	HGNC: 18430	AceView: SLAMF9	Ensembl:ENSG00000162723	euGenes: HUgn89886
ECgene: SLAMF9	H-InvDB: SLAMF9

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for SLAMF9	Pharmacogenomics, SNPs, Pathways

Intellectual Property for SLAMF9 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for SLAMF9 gene:
Search GeneIP for patents involving SLAMF9

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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	QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SLAMF9
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	GenScript Custom Purified and Recombinant Proteins Services for SLAMF9		GenScript cDNA clones with any tag delivered in your preferred vector for SLAMF9
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	Gene Mutant Library, Variants up to 10^11		Plasmid Preparation
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLAMF9

	SwitchGear 3'UTR luciferase reporter plasmids for SLAMF9
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ThermoFisher Antibodies for SLAMF9

Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SLAMF9

GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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SLAMF9 Gene

SLAM family member 9

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SLAMF9 Gene

SLAM family member 9

Aliasesfor SLAMF9 gene

Summariesfor SLAMF9 gene

Genomic Viewsfor SLAMF9 gene

Proteinsfor SLAMF9 gene

Protein Domains /Familiesfor SLAMF9 gene

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for SLAMF9 gene

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for SLAMF9 gene

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for SLAMF9 gene

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for SLAMF9 gene

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