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SLAMF8 Gene

protein-coding   GIFtS: 47
GCID: GC01P159796

SLAM Family Member 8

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
SLAM Family Member 81 2     CD3532
BLAME2 3 5     SBBI422
B-Lymphocyte Activator Macrophage Expressed2 3     B Lymphocyte Activator Macrophage Expressed2
BCM-Like Membrane Protein2 3     CD353 Antigen3

External Ids:    HGNC: 213911   Entrez Gene: 568332   Ensembl: ENSG000001587147   OMIM: 6066205   UniProtKB: Q9P0V83   

Export aliases for SLAMF8 gene to outside databases

Previous GC identifers: GC01P157013 GC01P156609 GC01P158063 GC01P131152


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for SLAMF8 Gene:
This gene encodes a member of the CD2 family of cell surface proteins involved in lymphocyte activation. These
proteins are characterized by Ig domains. This protein is expressed in lymphoid tissues, and studies of a similar
protein in mouse suggest that it may function during B cell lineage commitment. The gene is found in a region of
chromosome 1 containing many CD2 genes. (provided by RefSeq, Jul 2008)

GeneCards Summary for SLAMF8 Gene:
SLAMF8 (SLAM family member 8) is a protein-coding gene. GO annotations related to this gene include receptor activity.

UniProtKB/Swiss-Prot: SLAF8_HUMAN, Q9P0V8
Function: May play a role in B-lineage commitment and/or modulation of signaling through the B-cell receptor

Gene Wiki entry for SLAMF8 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000001.10  NT_004487.20  NC_018912.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the SLAMF8 gene promoter:
         Oct-B1   HOXA9   HOXA9B   Spz1   oct-B3   oct-B2   Meis-1b   POU2F1   POU2F1a   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLAMF8 promoter sequence
   Search Chromatin IP Primers for SLAMF8

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SLAMF8


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q23.2   Ensembl cytogenetic band:  1q23.2   HGNC cytogenetic band: 1q23.1

SLAMF8 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLAMF8 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P159796:  view genomic region     (about GC identifiers)

Start:
159,796,479 bp from pter      End:
159,807,282 bp from pter
Size:
10,804 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: SLAF8_HUMAN, Q9P0V8 (See protein sequence)
Recommended Name: SLAM family member 8 precursor  
Size: 285 amino acids; 31670 Da
Secondary accessions: Q32MC6 Q5VU15
Alternative splicing: 2 isoforms:  Q9P0V8-1   Q9P0V8-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for SLAMF8: NX_Q9P0V8

Explore proteomics data for SLAMF8 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn85

  • See SLAMF8 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_064510.1  
    ENSEMBL proteins: 
     ENSP00000289707   ENSP00000357084  

    SLAMF8 Human Recombinant Protein Products:

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    Cloud-Clone Corp. ELISAs for SLAMF8
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    Search eBioscience for ELISAs for SLAMF8 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    CD: CD molecules
    IGD: Immunoglobulin superfamily / Immunoglobulin-like domain containing

    2 InterPro protein domains:
     IPR015631 SLAM_fam_rcpts
     IPR007110 Ig-like_dom

    Graphical View of Domain Structure for InterPro Entry Q9P0V8

    ProtoNet protein and cluster: Q9P0V8

    UniProtKB/Swiss-Prot: SLAF8_HUMAN, Q9P0V8
    Similarity: Contains 1 Ig-like C2-type (immunoglobulin-like) domain


    Find genes that share domains with SLAMF8           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: SLAF8_HUMAN, Q9P0V8
    Function: May play a role in B-lineage commitment and/or modulation of signaling through the B-cell receptor

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872receptor activity IEA--
    GO:0005515protein binding ----
         
    Find genes that share ontologies with SLAMF8           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for SLAMF8:
     Wnt reporter downregulated 

         2 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Slamf8):
     hematopoietic system  immune system 

    Find genes that share phenotypes with SLAMF8           About GenesLikeMe

    Animal Models:
         MGI mouse knock-out Slamf8tm1Lex for SLAMF8

       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for SLAMF8
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    miRNA
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    Block miRNA regulation of human, mouse, rat SLAMF8 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate SLAMF8 (see all 12):
    hsa-miR-3164 hsa-miR-4311 hsa-miR-4254 hsa-miR-550a hsa-miR-3175 hsa-miR-371-5p hsa-miR-650 hsa-miR-199a-5p
    SwitchGear 3'UTR luciferase reporter plasmidSLAMF8 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat SLAMF8

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    SLAF8_HUMAN, Q9P0V8: Membrane; Single-pass type I membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane3
    extracellular2
    cytosol1
    lysosome1
    mitochondrion1
    peroxisome1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with SLAMF8           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SLAMF8
    Interactions:

        Search GeneGlobe Interaction Network for SLAMF8

    Gene Ontology (GO): 5 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0033860regulation of NAD(P)H oxidase activity IEA--
    GO:0035690cellular response to drug IEA--
    GO:0042742defense response to bacterium IEA--
    GO:0043549regulation of kinase activity IEA--
    GO:0090383phagosome acidification IEA--

    Find genes that share ontologies with SLAMF8           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SLAMF8 (SLAF8)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SLAMF8 gene: 
    NM_020125.2  

    Unigene Cluster for SLAMF8:

    SLAM family member 8
    Hs.438683  [show with all ESTs]
    Unigene Representative Sequence: NM_020125
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000289707(uc001fue.4) ENST00000368104 ENST00000471286 ENST00000497141

    miRNA
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    Block miRNA regulation of human, mouse, rat SLAMF8 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate SLAMF8 (see all 12):
    hsa-miR-3164 hsa-miR-4311 hsa-miR-4254 hsa-miR-550a hsa-miR-3175 hsa-miR-371-5p hsa-miR-650 hsa-miR-199a-5p
    SwitchGear 3'UTR luciferase reporter plasmidSLAMF8 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat SLAMF8
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SLAMF8
    Primer
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat SLAMF8
      QuantiTect SYBR Green Assays in human, mouse, rat SLAMF8
      QuantiFast Probe-based Assays in human, mouse, rat SLAMF8

    Additional mRNA sequence: 

    AF144235.1 AF146761.1 AK074669.1 BC109194.2 

    8 DOTS entries:

    DT.441784  DT.121405823  DT.91708048  DT.97815630  DT.97837392  DT.121405954  DT.100783193  DT.100777799 

    Selected AceView cDNA sequences (see all 78):

    CD368492 AI680659 BX118110 AW662401 CD367956 AF146761 AA627522 N79421 
    CD365198 CA307477 NM_020125 BM725151 BG230648 AA320408 AW664177 BX385959 
    AW206273 AI697841 AA917335 R09841 CD365463 CO246344 CB529727 BX385960 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for SLAMF8    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b
    SP1:                                                      
    SP2:                    -     -                           
    SP3:                    -                                 


    ECgene alternative splicing isoforms for SLAMF8

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SLAMF8 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CAAAACTGGC
    SLAMF8 Expression
    About this image

    SLAMF8 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SLAMF8 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.438683

    UniProtKB/Swiss-Prot: SLAF8_HUMAN, Q9P0V8
    Tissue specificity: Expressed in lymph node, spleen, thymus and bone marrow

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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for SLAMF8 gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Slamf81 , 5 SLAM family member 81, 5 80.1(n)1
    76.98(a)1
      1 (79.99 cM)5
    747481  NM_029084.31  NP_083360.21 
     1725813775 


    ENSEMBL Gene Tree for SLAMF8 (if available)
    TreeFam Gene Tree for SLAMF8 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SLAMF8 (see all 278)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs24944951,2
    C,F,A,H--159794514(+) GGGCTG/AAGCCT 1 -- us2k113Minor allele frequency- A:0.18NS EA NA WA CSA 660
    rs1411300551,2
    C--159794551(+) CACCTA/GAGTAG 1 -- us2k10--------
    rs25013431,2
    C,F,A,H--159794576(-) CATTCC/ATCAGG 1 -- us2k122Minor allele frequency- A:0.22EA NS NA WA CSA 2501
    rs1427479121,2
    C--159794588(+) ATGACA/GGAATT 1 -- us2k10--------
    rs1167856881,2
    F--159794635(+) TCTCCA/TCCCCC 1 -- us2k11Minor allele frequency- T:0.02WA 118
    rs1445014941,2
    --159794637(+) TCCACA/CCCCAT 1 -- us2k10--------
    rs1831769511,2
    --159794639(+) CACCCC/GCATGA 1 -- us2k10--------
    rs1874471551,2
    --159794655(+) AGCTTC/TCCAGT 1 -- us2k10--------
    rs741247231,2
    C,F--159794675(+) TCCTCA/GGTACT 1 -- us2k14Minor allele frequency- G:0.11WA CSA 123
    rs1926257761,2
    --159794868(+) CCCAGA/TCCACC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for SLAMF8 (159796479 - 159807282 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for SLAMF8: --
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing SLAMF8
    DNA2.0 Custom Variant and Variant Library Synthesis for SLAMF8

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 606620    OMIM disorders: --


    Find genes that share disorders with SLAMF8           About GenesLikeMe

    Human Genome Epidemiology (HuGE) Navigator: SLAMF8 (1 document)

    Export disorders for SLAMF8 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SLAMF8 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with SLAMF8)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning, expression, and function of BLAME, a novel member of the CD2 family. (PubMed id 11313408)1, 2, 3 Kingsbury G.A....Villeval J.-L. (J. Immunol. 2001)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (Nature 2006)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    5. Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)1, 2 Zhang Z. and Henzel W.J. (Protein Sci. 2004)
    6. Functional requirements for interactions between CD84 and Src homology 2 domain-containing proteins and their contribution to human T cell activation. (PubMed id 12928397)1, 9 Tangye S.G.... van de Weerdt B.C.M. (J. Immunol. 2003)
    7. New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)1 Davila S....Seielstad M. (Genes Immun. 2010)
    8. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    9. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PubMed id 16303743)1 Otsuki T....Isogai T. (DNA Res. 2005)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 56833 HGNC: 21391 AceView: SLAMF8 Ensembl:ENSG00000158714 euGenes: HUgn56833
    ECgene: SLAMF8 H-InvDB: SLAMF8

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SLAMF8 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SLAMF8 gene:
    Search GeneIP for patents involving SLAMF8

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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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