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Aliases for SKINT1L Gene

Aliases for SKINT1L Gene

  • Skint1 Like (Pseudogene) 2 3 5
  • Skint-Like, Pseudogene 3
  • SKINT1 3
  • SKINTL 3
  • SKINTP 3
  • BTN12 3

External Ids for SKINT1L Gene

Previous HGNC Symbols for SKINT1L Gene

  • SKINTP
  • SKINTL

Summaries for SKINT1L Gene

GeneCards Summary for SKINT1L Gene

SKINT1L (Skint1 Like (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SKINT1L Gene

Genomics for SKINT1L Gene

Regulatory Elements for SKINT1L Gene

Enhancers for SKINT1L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F047226 0.6 ENCODE 14.8 +952.7 952746 7.2 HDGF ARNT CREB3L1 SIN3A YY1 FOS KLF13 JUNB REST SMARCB1 SKINT1L EFCAB14-AS1 PDZK1IP1 TAL1 ENSG00000226252
GH01F047332 0.9 FANTOM5 ENCODE 12.8 +848.1 848140 4.2 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF143 SP3 SP5 ENSG00000226252 FOXE3 EFCAB14-AS1 CMPK1 SKINT1L TRABD2B TAL1 LOC105378702 ENSG00000272491 LINC01389
GH01F048221 0.8 Ensembl ENCODE 11.9 -40.5 -40466 3.1 TBP ARID4B DMAP1 ZNF48 ZSCAN9 RAD21 YY1 ZNF366 CREM MIXL1 ENSG00000272491 SKINT1L SLC5A9
GH01F048201 0.6 ENCODE 10.9 -19.7 -19706 1.2 CTCF ZNF654 CEBPB TRIM22 REST RAD21 RFX5 TEAD3 CEBPA SMC3 ENSG00000272491 SKINT1L PIR39007 SLC5A9
GH01F048241 1 Ensembl ENCODE 7.2 -59.9 -59863 0.6 MNT SPI1 SLC5A9 SKINT1L ENSG00000272491 GC01P048230 ENSG00000279214
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SKINT1L on UCSC Golden Path with GeneCards custom track

Genomic Location for SKINT1L Gene

Chromosome:
1
Start:
48,096,092 bp from pter
End:
48,182,428 bp from pter
Size:
86,337 bases
Orientation:
Minus strand

Genomic View for SKINT1L Gene

Genes around SKINT1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SKINT1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SKINT1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SKINT1L Gene

Proteins for SKINT1L Gene

Post-translational modifications for SKINT1L Gene

No Post-translational modifications

No data available for DME Specific Peptides for SKINT1L Gene

Domains & Families for SKINT1L Gene

Gene Families for SKINT1L Gene

Suggested Antigen Peptide Sequences for SKINT1L Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SKINT1L: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SKINT1L Gene

Function for SKINT1L Gene

Phenotypes for SKINT1L Gene

genes like me logo Genes that share phenotypes with SKINT1L: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SKINT1L Gene

Localization for SKINT1L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SKINT1L Gene

Pathways & Interactions for SKINT1L Gene

SuperPathways for SKINT1L Gene

No Data Available

Interacting Proteins for SKINT1L Gene

Gene Ontology (GO) - Biological Process for SKINT1L Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SKINT1L Gene

Transcripts for SKINT1L Gene

mRNA/cDNA for SKINT1L Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SKINT1L Gene

Skint-like, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SKINT1L Gene

No ASD Table

Relevant External Links for SKINT1L Gene

GeneLoc Exon Structure for
SKINT1L
ECgene alternative splicing isoforms for
SKINT1L

Expression for SKINT1L Gene

NURSA nuclear receptor signaling pathways regulating expression of SKINT1L Gene:

SKINT1L

SOURCE GeneReport for Unigene cluster for SKINT1L Gene:

Hs.585393
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SKINT1L Gene

Orthologs for SKINT1L Gene

Evolution for SKINT1L Gene

ENSEMBL:
Gene Tree for SKINT1L (if available)
TreeFam:
Gene Tree for SKINT1L (if available)

No data available for Orthologs for SKINT1L Gene

Paralogs for SKINT1L Gene

No data available for Paralogs for SKINT1L Gene

Variants for SKINT1L Gene

Sequence variations from dbSNP and Humsavar for SKINT1L Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10591453 -- 48,102,093(+) TTTTT(-/T)GAGAC intron-variant
rs10788881 -- 48,128,751(+) AGGGA(A/T)GTTTG intron-variant
rs10788882 -- 48,164,766(+) GGAAT(C/G)GGATT intron-variant, nc-transcript-variant
rs10888596 -- 48,103,000(+) AATGG(G/T)GTTTC intron-variant
rs10888598 -- 48,181,435(+) GGACA(A/G)ATACT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SKINT1L Gene

Variant ID Type Subtype PubMed ID
esv3893523 CNV loss 25118596
nsv1152954 CNV duplication 26484159

Relevant External Links for SKINT1L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SKINT1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SKINT1L Gene

Disorders for SKINT1L Gene

Relevant External Links for SKINT1L

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SKINT1L
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SKINT1L

No disorders were found for SKINT1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SKINT1L Gene

Publications for SKINT1L Gene

  1. The SKINT1-like gene is inactivated in hominoids but not in all primate species: implications for the origin of dendritic epidermal T cells. (PMID: 25830554) Mohamed R.H. … Kasahara M. (PLoS ONE 2015) 2 3 64
  2. Skint1, the prototype of a newly identified immunoglobulin superfamily gene cluster, positively selects epidermal gammadelta T cells. (PMID: 18408721) Boyden L.M. … Lifton R.P. (Nat. Genet. 2008) 2 3 64
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 64

Products for SKINT1L Gene

Sources for SKINT1L Gene

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