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SKI Gene

protein-coding   GIFtS: 66

GC01P002173
v-ski sarcoma viral oncogene homolog (avian)
(Previous name: v-ski avian sarcoma viral oncogene homolog )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
C-ski 3
OTTHUMP00000001507 2
SKV 2
Descriptions
Avian sarcoma viral (v-ski) oncogene homolog 2
ski oncoprotein 2
v-ski avian sarcoma viral oncogene homolog 1, 2
v-ski sarcoma viral oncogene homolog 2
v-ski sarcoma viral oncogene homolog (avian) 2
External Ids
HGNC: 108961
Entrez Gene: 64972
UniProtKB: P127553
Ensembl: ENSG000001579337
Search outside databases for aliases for SKI gene

Previous GC identifers: GC01P001715 GC01P9M0086

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: SKI_HUMAN, P12755
Function: May play a role in terminal differentiation of skeletal muscle cells but not in the
determination of cells to the myogenic lineage

Gene Wiki entry for SKI (SKI_protein)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the SKI gene  

Entrez Gene cytogenetic band: 1q22-q24   Ensembl cytogenetic band:  1p36.33   HGNC cytogenetic band: 1q22-q24

SKI Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P002173:     (about GC identifiers)

Start:
2,149,994 bp from pter
End:
2,229,316 bp from pter
Size:
79,323 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000001.9  NT_004350.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: SKI_HUMAN, P12755 (See protein sequence)
Recommended Name: Ski oncogene  
Size: 728 amino acids; 80005 Da
Subunit: Interacts with SMAD2, SMAD3 and SMAD4. Interacts with HIPK2. Part of a complex with HIPK2
and SMAD1/2/3
Subcellular location: Nucleus
PDB structure from and Proteopedia :
1MR1 (3D)    1SBX (3D)    
Secondary accessions: Q5SYT7

REFSEQ proteins: NP_003027.1  

ENSEMBL proteins: 
ENSP00000367797 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (SKI)
Browse Abnova for Human Recombinant Proteins
              OriGene Purified Recombinant Human Protein: SKI 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005634 nucleus NAS--
GO:0005654 nucleoplasm EXP10549282 11121043
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Antibodies for SKI: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of SKI
Sigma-Aldrich Antibodies for SKI
R&D Systems Antibodies for SKI
Antibodies from Abcam (SKI), each with their AbpromiseSM
Browse Abnova for Monoclonal and Polyclonal Antibodies
Search Novus for antibodies for SKI

Assays for SKI: 
Browse Invitrogen for biochemical assays
Millipore Kits and Assays for the Analysis of SKI
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

3 InterPro domains/families:
 IPR010919 SAND-like
 IPR003380 Transform_Ski
 IPR014890 c-SKI_SMAD_bd


   GeneDecks  SKI for the domains selected above  
About GeneDecksing

Graphical View of Domain Structure for InterPro Entry P12755

ProtoNet protein and cluster: P12755

3 Blocks protein families:
IPB000770 SAND domain
IPB003380 Transforming protein Ski
IPB010919 SAND-like


UniProtKB/Swiss-Prot: SKI_HUMAN, P12755
Similarity: Belongs to the SKI family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (SKI)
Millipore RNAi Products for the Analysis of SKI Gene knock-down
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003036

              Applied Biosystems Silencer® siRNAs for SKI

              Sigma-Aldrich siRNA for SKI  
                     Sigma-Aldrich shRNA for SKI  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003036
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_003036
                                 untagged cDNA clone in CMV expression vector: NM_003036 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_003036

UniProtKB/Swiss-Prot: SKI_HUMAN, P12755
Function: May play a role in terminal differentiation of skeletal muscle cells but not in the
determination of cells to the myogenic lineage

Genatlas biochemistry entry for SKI:
avian sarcoma viral (v-ski) oncogene homolog

12 MGI mutant phenotypes (inferred from 1 allele(MGI details for Ski):

cellularcraniofacialembryogenesisgrowth/size
lethality-prenatal/perinatallimbs/digits/tailmusclenervous systemskeleton
tumorigenesisvision/eye

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0000166 nucleotide binding IEA--
GO:0005515 protein binding IPI14525983
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


2 Millipore Pathways for SKI
 Signal transduction Activin A signaling regulation
 Development TGF-beta receptor signaling

   GeneDecks  SKI for the pathways selected above  
About GeneDecksing

 Gene Network CentralTM Interacting Genes and Proteins Network for  SKI 


5/25 Interacting proteins for SKI (ENSP000003677973 P127551, 2) via UniProtKB, MINT, and/or STRING (see all 25 )
InteractantInteraction Details
GeneCardExternal ID(s)
NCOR1O753761STRING (score=.988) EBI-347281, EBI-347233
SIN3AQ96ST31STRING (score=.991) EBI-347281, EBI-347218
SMAD3P840221, 2STRING (score=.999) EBI-347281, EBI-347161 MINT-16378 MINT-17964 MINT-16379 EBI-347281, EBI-347161 MINT-16378 MINT-17964 MINT-16379
SMAD4Q134851, 2STRING (score=.999) EBI-347281, EBI-347263 MINT-61954 EBI-347281, EBI-347263 MINT-61954
SMAD3P840221, 2STRING (score=.999) EBI-347281, EBI-347161 MINT-16378 MINT-17964 MINT-16379 EBI-347281, EBI-347161 MINT-16378 MINT-17964 MINT-16379
About this table

2 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0030154 cell differentiation NAS--
GO:0030509 BMP signaling pathway EXP15621726
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for SKI
2 Novoseek chemical compound relationships for SKI gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
tgf beta1 39.28 1 16871886 (1)
leucine 25.55 2 7929440 (1), 9927733 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (SKI)
Millipore RNAi Products for the Analysis of SKI Gene knock-down
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003036

              Sigma-Aldrich siRNA for SKI  
                     Sigma-Aldrich shRNA for SKI  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_003036  

REFSEQ mRNAs for SKI gene: 

NM_003036.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_003036  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003036
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_003036
                                 untagged cDNA clone in CMV expression vector: NM_003036 

Additional cDNA sequence: 

AK309515.1 X15218.1 

6 DOTS entries:

DT.445410  DT.100750103  DT.121455724  DT.121455848  DT.121455772  DT.95333060 

24/121 AceView cDNA sequences (see all 121 ):

CK821024 BF109460 BF924336 BQ888578 BM555193 CD672209 AI751723 AI282809 
BM760913 AI378676 X15218 BU189280 AW007133 NM_003036 AU184930 Z38298 
AL134997 AI469036 CD672208 BE882804 BU182699 BM665239 BE394343 BM728747 

highest scoring ESTs for SKI:

X15218 AA810956 AA969049 AI291792 AI432483 AI751723 AI819231 AI824553 AL134997 AW136188 

Unigene Cluster for SKI:

V-ski sarcoma viral oncogene homolog (avian)
Hs.663133  [show with all ESTs]
Unigene Representative Sequence: NM_003036


GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for SKI

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7a · 7b
SP1:        -                                                         
SP2:                                                                  
SP3:                                                                  

About this scheme

ECgene alternative splicing isoforms for SKI

1 Ensembl transcript including schematic representation:
ENST00000378536  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

SKI expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for SKI

1 / 2 / 3

8 probe-sets matching SKI gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

52776_at2, 3 U95-B 1 1.00 1.00 0.08 0.99 AI925357 0.80 0.80 0.80 1

78059_at2, 3 U95-E 1 1.00 1.00 0.29 1.85 AI432483 0.80 1.00 0.91 1

41499_at2, 3 U95-A 1 1.00 1.00 0.44 0.69 X15218 1.00 1.00 1.00 1

1918_at2, 3 U95-A 1 1.00 1.00 0.24 0.50 X15218 1.00 1.00 1.00 1

204270_at2, 3 U133-A 1 1.00 1.00 -- -- AI568728 0.60 0.75 0.68 1

229265_at2, 3 U133-B 1 1.00 1.00 -- -- AA927480 0.40 1.00 0.76 1

204270_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

229265_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: TGACCCCCTC

SOURCE GeneReport for Unigene cluster: Hs.663133
(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for SKI gene from 5/8 species (see all 8 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
SKI1   -- v-ski sarcoma viral oncogene homolog (avian) 89.81(n)
93.39(a)
489610  XM_546730.2  XP_546730.2 
cow
(Bos taurus)
SKI1   -- v-ski sarcoma viral oncogene homolog (avian) 89.34(n)
90.2(a)
506127  XM_582529.3  XP_582529.3 
mouse
(Mus musculus)
Ski1, 5 4 (78.90 cM)5
ski sarcoma viral oncogene homolog (avian)1, 5 88.81(n)1
93.4(a)1
204811  NM_011385.21  NP_035515.21 
 AA0621725  AA5894605  (see all 25)
chicken
(Gallus gallus)
SKI1   -- v-ski sarcoma viral oncogene homolog (avian) 75.96(n)
83.64(a)
428181  NM_001039318.1  NP_001034407.1 
zebrafish
(Danio rerio)
skia2   -- nuclear oncoprotein skia 80.2(n) 30101  NM_130935.1 
About this table        Species with no ortholog for SKI

ENSEMBL Gene Tree for SKI
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for SKI gene
ENSG000002154742  SKIL2  LBXCOR12  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/465 NCBI SNPs in SKI are shown (see all 465 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 182)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 1 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs28431571,2
C,F,H2230243(-) GAGCCG/AAAGTG 1 -- ut31 ese38Minor allele frequency- A:0.04EU EA WA NA 780
rs21730491,2
C,F,H2229866(+) CAACAC/TGCAGA 1 -- ut31 ese33Minor allele frequency- T:0.15EU EA 298
rs37659311,2
F,H2229444(+) GTTACG/AGTATT 1 -- ut314Minor allele frequency- A:0.02EA EU 1532
--
rs124031741,2
H2225598(+) cacctC/Gctcct 1 S/C mis1 trp34Minor allele frequency- G:0.00EU EA WA 404
rs22300081,2
F2228097(+) CGACAA/TCGCGG 1 -- ut31 ese31Minor allele frequency- T:0.17MN 18
rs21323031,2
A,C,F,H,O2213118(+) AGCGCC/TAAAGT 1 -- int115Minor allele frequency- T:0.12NA EU EA WA 1398
rs20171431,2
A,C,F,H,O2210509(+) TGAGCT/CTCTCT 1 -- int113Minor allele frequency- C:0.47EU EA WA NA MN 1256
rs17137121,2
A,C,F,H,O2166021(+) TGTAAC/TTTGTG 1 -- int14Minor allele frequency- T:0.35EA WA MN 482
rs2605131,2
A,C,F,H,O2170384(-) TCGACC/TGCATC 1 -- int114Minor allele frequency- T:0.47EA NA MN EU WA 928
--
rs2605091,2
A,C,F,H,O2176845(+) GTGCCA/GCTCTG 1 -- int14Minor allele frequency- G:0.35EU EA WA 416
About this table

HapMap Linkage Disequilibrium images for SKI (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 164780

8 Novoseek disease relationships for SKI gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
leukemogenesis 45.35 2 17621263 (1)
metastatic melanoma 36.82 3 12793438 (1), 15986136 (1), 11719430 (1)
tumors 24.49 28 15986136 (3), 18451154 (3), 14583455 (2), 11781823 (2) (see all 17)
melanoma 22.81 30 14583455 (6), 18782659 (5), 11719430 (4), 12793438 (3) (see all 5)
cancer 15.96 8 18451154 (2), 10485843 (1), 19114989 (1), 19096149 (1) (see all 5)
pancreatic cancer 7.60 3 17592292 (3)
carcinoma 0.00 1 19096149 (1)
leukemia 0.00 2 15542823 (1), 17621263 (1)
About this table

Human Gene Mutation Database: SKI
Genetic Association Database: SKI
Human Genome Epidemiology Navigator: SKI (3 documents)
Tumor Gene Database: SKI

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/103 PubMed articles for SKI gene (see all 103 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 6497 HGNC: 10896 AceView: SKI Ensembl:ENSG00000157933 euGenes: HUgn6497
ECgene: SKI H-InvDB: SKI
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
ATLAS Chromosomes in Cancer entry for SKI Genetics and Cytogenetics in Oncology and Haematology
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for SKI:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for SKI-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for SKI Antibodies for SKI
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for SKI Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Search Tocris compounds for SKI




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Search Novus for antibodies for SKI

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