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Aliases & Descriptions for SKI
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| C-ski 3 | | OTTHUMP00000001507 2 | | SKV 2 |
| | | Descriptions |
|---|
| Avian sarcoma viral (v-ski) oncogene homolog 2 | | ski oncoprotein 2 | | v-ski avian sarcoma viral oncogene homolog 1, 2 | | v-ski sarcoma viral oncogene homolog 2 | | v-ski sarcoma viral oncogene homolog (avian) 2 |
|
| | Search outside databases for aliases for SKI genePrevious GC identifers: GC01P001715 GC01P9M0086 |
Summaries for SKI(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: SKI_HUMAN, P12755Function: May play a role in terminal differentiation of skeletal muscle cells but not in the determination of cells to the myogenic lineageGene Wiki entry for SKI (SKI_protein) |
Genomic Location for SKI
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SKI gene 
Entrez Gene cytogenetic band: 1q22-q24 Ensembl cytogenetic band: 1p36.33 HGNC cytogenetic band: 1q22-q24SKI Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P002173:
(about GC identifiers)
Start:
|
2,149,994 bp from pter |
End:
|
2,229,316 bp from pter |
Size:
|
79,323 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000001.9 NT_004350.18
| Proteins for SKI
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SKI_HUMAN, P12755 (See
protein sequence)Recommended Name: Ski oncogene Size: 728 amino acids; 80005 Da
Subunit: Interacts with SMAD2, SMAD3 and SMAD4. Interacts with HIPK2. Part of a complex with HIPK2 and SMAD1/2/3
Subcellular location: Nucleus
PDB structure from and Proteopedia :1MR1 (3D)
 1SBX (3D)
 
Secondary accessions: Q5SYT7REFSEQ proteins: NP_003027.1
ENSEMBL proteins: ENSP00000367797
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: SKI 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SKI: Assays for SKI: | Protein
Domains/ Families for SKI(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P12755
ProtoNet protein and cluster: P12755 3 Blocks protein families: IPB000770 SAND domain IPB003380 Transforming protein Ski IPB010919 SAND-like
UniProtKB/Swiss-Prot: SKI_HUMAN, P12755Similarity: Belongs to the SKI family | Gene Function for SKI
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003036
Applied Biosystems Silencer® siRNAs for SKI
Sigma-Aldrich siRNA for SKI  Sigma-Aldrich shRNA for SKI  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003036                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003036                                  untagged cDNA clone in CMV expression vector: NM_003036 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003036
UniProtKB/Swiss-Prot: SKI_HUMAN, P12755Function: May play a role in terminal differentiation of skeletal muscle cells but not in the determination of cells to the myogenic lineageGenatlas biochemistry entry for SKI:avian sarcoma viral (v-ski) oncogene homolog12 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ski):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for SKI
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for SKI 
5/25 Interacting proteins for SKI (ENSP000003677973 P127551, 2) via UniProtKB, MINT, and/or STRING (see all 25
)| Interactant | Interaction Details |
|---|
| GeneCard | External ID(s) |
|---|
| NCOR1 | O753761 | STRING (score=.988) EBI-347281, EBI-347233 | | SIN3A | Q96ST31 | STRING (score=.991) EBI-347281, EBI-347218 | | SMAD3 | P840221, 2 | STRING (score=.999) EBI-347281, EBI-347161 MINT-16378 MINT-17964 MINT-16379 EBI-347281, EBI-347161 MINT-16378 MINT-17964 MINT-16379 | | SMAD4 | Q134851, 2 | STRING (score=.999) EBI-347281, EBI-347263 MINT-61954 EBI-347281, EBI-347263 MINT-61954 | | SMAD3 | P840221, 2 | STRING (score=.999) EBI-347281, EBI-347161 MINT-16378 MINT-17964 MINT-16379 EBI-347281, EBI-347161 MINT-16378 MINT-17964 MINT-16379 | About this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for SKI(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SKI 2 Novoseek chemical compound relationships for SKI gene
About this table
|
Transcripts for SKI(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003036
Sigma-Aldrich siRNA for SKI  Sigma-Aldrich shRNA for SKI  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003036 REFSEQ mRNAs for SKI gene: NM_003036.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003036               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003036                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003036                                  untagged cDNA clone in CMV expression vector: NM_003036  Additional cDNA sequence: AK309515.1 X15218.1 6 DOTS entries: DT.445410 DT.100750103 DT.121455724 DT.121455848 DT.121455772 DT.95333060 24/121 AceView cDNA sequences (see all 121
):CK821024 BF109460 BF924336 BQ888578 BM555193 CD672209 AI751723 AI282809 BM760913 AI378676 X15218 BU189280 AW007133 NM_003036 AU184930 Z38298 AL134997 AI469036 CD672208 BE882804 BU182699 BM665239 BE394343 BM728747
highest scoring ESTs for SKI:X15218 AA810956 AA969049 AI291792 AI432483 AI751723 AI819231 AI824553 AL134997 AW136188 Unigene Cluster for SKI: V-ski sarcoma viral oncogene homolog (avian) Hs.663133 [show with all ESTs]Unigene Representative Sequence: NM_003036
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for SKI
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | |
| SP1: | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SKI
1 Ensembl transcript including schematic representation: ENST00000378536
|
Expression for SKI
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SKI expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SKI
1 / 2 / 3 8 probe-sets matching SKI gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGACCCCCTC
SOURCE GeneReport for Unigene cluster: Hs.663133
|
Orthologs for SKI
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SKI gene from 5/8 species (see all 8
)
About this table Species with no ortholog for SKI
ENSEMBL Gene Tree for SKI | Paralogs for SKI(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SKI gene
- ENSG000002154742 SKIL2 LBXCOR12
|
SNPs/Variants for SKI(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SKI (up to first 250kb)
|
Disorders & Mutations for SKI
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 164780 8 Novoseek disease relationships for SKI gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| leukemogenesis |
45.35 |
2 |
17621263 (1) |
| metastatic melanoma |
36.82 |
3 |
12793438 (1), 15986136 (1), 11719430 (1) |
| tumors |
24.49 |
28 |
15986136 (3), 18451154 (3), 14583455 (2), 11781823 (2) (see all 17) |
| melanoma |
22.81 |
30 |
14583455 (6), 18782659 (5), 11719430 (4), 12793438 (3) (see all 5) |
| cancer |
15.96 |
8 |
18451154 (2), 10485843 (1), 19114989 (1), 19096149 (1) (see all 5) |
| pancreatic cancer |
7.60 |
3 |
17592292 (3) |
| carcinoma |
0.00 |
1 |
19096149 (1) |
| leukemia |
0.00 |
2 |
15542823 (1), 17621263 (1) |
About this table
Human Gene Mutation Database: SKI Genetic Association Database: SKI Human Genome Epidemiology Navigator: SKI (3 documents) Tumor Gene Database: SKI
|
Medical News for SKI(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for SKI (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/103 PubMed articles for SKI gene (see all 103
):- Isolation of human cDNA clones of ski and the ski-related gene, sno. (PubMed id 2762147)2, 3, 4 Nomura N.... Ishizaki R. (1989)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)3, 4 Gregory S.G.... Bentley D.R. (2006)
- Medical sequencing of candidate genes for nonsyndromic cleft lip and palate. (PubMed id 16327884)3, 6 Vieira A.R....Murray J.C. (2005)
- Genetic variation in the proto-oncogene SKI and risk for orofacial clefting. (PubMed id 16054854)3, 6 Lu W....Finnell R.H. (2005)
- Requirement of the co-repressor homeodomain-interacting protein kinase 2 for ski-mediated inhibition of bone morphogenetic protein- induced transcriptional activation. (PubMed id 12874272)3, 4 Harada J....Ishii S. (2003)
- The Ski oncoprotein is upregulated and localized at the centrosomes and mitotic spindle during mitosis. (PubMed id 15806149)1, 3 Marcelain K. and Hayman M.J. (2005)
- Transforming growth factor-beta suppresses the ability of Ski to inhibit tumor metastasis by inducing its degradation. (PubMed id 18451154)1, 3 Le Scolan E....Luo K. (2008)
- Nuclear and cytoplasmic c-Ski differently modulate cellular functions. (PubMed id 17054724)1, 3 Nagata M....Miyazono K. (2006)
- The transforming activity of Ski and SnoN is dependent on their ability to repress the activity of Smad proteins. (PubMed id 12764135)1, 3 He J....Luo K. (2003)
- Increased expression of c-Ski as a co-repressor in transforming growth factor-beta signaling correlates with progression of esophageal squamous cell carcinoma. (PubMed id 14712482)1, 3 Fukuchi M....Kuwano H. (2004)
|
Search for SKI
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SKI
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SKI
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SKI(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SKI(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SKI:

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Incremental update: 13 Oct 2009
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