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Aliases for SIX3-AS1 Gene

Subcategory (RNA class) for SIX3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SIX3-AS1 Gene

  • SIX3 Antisense RNA 1 2 3 5
  • SIX3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SIX3OS 3

External Ids for SIX3-AS1 Gene

Previous GeneCards Identifiers for SIX3-AS1 Gene

  • GC02M045169

Summaries for SIX3-AS1 Gene

GeneCards Summary for SIX3-AS1 Gene

SIX3-AS1 (SIX3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SIX3-AS1 Gene

Genomics for SIX3-AS1 Gene

Regulatory Elements for SIX3-AS1 Gene

Enhancers for SIX3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F044938 0.2 ENCODE 6.2 +3.2 3183 1.3 KLF1 SIN3A ZNF48 GLIS2 POLR2A PATZ1 PRDM10 ZNF600 TCF7L2 EZH2 SIX3-AS1 ENSG00000274547 ENSG00000276048
GH02F044947 0.8 ENCODE 5.8 +4.0 4022 0.3 CTCF PHF8 CBX2 MAX CHD1 SIN3A REST RAD21 POLR2A GABPB1 SIX3-AS1 ENSG00000274547 ENSG00000276048
GH02F044943 0.5 ENCODE 0.8 -2.1 -2139 0.2 CTCF RNF2 CBX2 MAFG ZNF316 MAFF CBX8 CTBP2 IRF1 MAFK SIX3-AS1 ENSG00000225156
GH02F044945 0.2 ENCODE 0.8 -2.4 -2419 0.2 RNF2 SUZ12 CBX2 MAFG ZNF316 MAFF CTBP2 IRF1 MAFK EMSY SIX3-AS1 ENSG00000225156
GH02F044949 0.5 ENCODE 0.4 -8.1 -8139 0.2 KLF1 SUZ12 CTBP2 KDM6A EZH2 TRIM28 ENSG00000225156 SIX3-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SIX3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SIX3-AS1 Gene

Chromosome:
2
Start:
44,940,154 bp from pter
End:
44,941,878 bp from pter
Size:
1,725 bases
Orientation:
Minus strand

Genomic View for SIX3-AS1 Gene

Genes around SIX3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SIX3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SIX3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIX3-AS1 Gene

Proteins for SIX3-AS1 Gene

Post-translational modifications for SIX3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SIX3-AS1 Gene

Domains & Families for SIX3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SIX3-AS1 Gene

Function for SIX3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SIX3-AS1 Gene

Localization for SIX3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SIX3-AS1 Gene

Pathways & Interactions for SIX3-AS1 Gene

SuperPathways for SIX3-AS1 Gene

No Data Available

Interacting Proteins for SIX3-AS1 Gene

Gene Ontology (GO) - Biological Process for SIX3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SIX3-AS1 Gene

Transcripts for SIX3-AS1 Gene

mRNA/cDNA for SIX3-AS1 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SIX3-AS1 Gene

SIX3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SIX3-AS1 Gene

No ASD Table

Relevant External Links for SIX3-AS1 Gene

GeneLoc Exon Structure for
SIX3-AS1
ECgene alternative splicing isoforms for
SIX3-AS1

Expression for SIX3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SIX3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SIX3-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x13.5), Brain - Caudate (basal ganglia) (x10.7), Brain - Putamen (basal ganglia) (x8.9), and Pituitary (x8.2).

SOURCE GeneReport for Unigene cluster for SIX3-AS1 Gene:

Hs.503113
genes like me logo Genes that share expression patterns with SIX3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SIX3-AS1 Gene

Orthologs for SIX3-AS1 Gene

Evolution for SIX3-AS1 Gene

ENSEMBL:
Gene Tree for SIX3-AS1 (if available)
TreeFam:
Gene Tree for SIX3-AS1 (if available)

No data available for Orthologs for SIX3-AS1 Gene

Paralogs for SIX3-AS1 Gene

No data available for Paralogs for SIX3-AS1 Gene

Variants for SIX3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SIX3-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs121917878 Pathogenic 44,942,780(+) GGTAC(C/G)TACAG upstream-variant-2KB, reference, missense
rs121917879 Pathogenic 44,942,874(+) GAACC(C/G)GCGGC upstream-variant-2KB, reference, missense
rs121917880 Pathogenic 44,942,853(+) ACAAG(C/T)AGGCA upstream-variant-2KB, reference, missense
rs121917881 Pathogenic 44,942,310(+) CGGCG(A/G)CTCCA upstream-variant-2KB, reference, missense
rs137853021 Pathogenic 44,942,443(+) CTCTG(G/T)TCGCT upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SIX3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv457207 CNV loss 19166990
nsv526534 CNV loss 19592680
nsv581702 CNV loss 21841781
nsv953779 CNV deletion 24416366

Relevant External Links for SIX3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SIX3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SIX3-AS1 Gene

Disorders for SIX3-AS1 Gene

Relevant External Links for SIX3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SIX3-AS1

No disorders were found for SIX3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SIX3-AS1 Gene

Publications for SIX3-AS1 Gene

  1. Natural antisense transcripts associated with genes involved in eye development. (PMID: 15703187) Alfano G. … Banfi S. (Hum. Mol. Genet. 2005) 2 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SIX3-AS1 Gene

Sources for SIX3-AS1 Gene

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