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Aliases for SIX3-AS1 Gene

Subcategory (RNA class) for SIX3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SIX3-AS1 Gene

  • SIX3 Antisense RNA 1 2 3 5
  • SIX3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SIX3-AS1 Gene

Previous GeneCards Identifiers for SIX3-AS1 Gene

  • GC02M045169

Summaries for SIX3-AS1 Gene

GeneCards Summary for SIX3-AS1 Gene

SIX3-AS1 (SIX3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SIX3-AS1 Gene

Genomics for SIX3-AS1 Gene

Regulatory Elements for SIX3-AS1 Gene

Enhancers for SIX3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around SIX3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SIX3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SIX3-AS1 Gene

44,940,154 bp from pter
44,941,878 bp from pter
1,725 bases
Minus strand

Genomic View for SIX3-AS1 Gene

Genes around SIX3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SIX3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SIX3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIX3-AS1 Gene

Proteins for SIX3-AS1 Gene

Post-translational modifications for SIX3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SIX3-AS1 Gene

Domains & Families for SIX3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SIX3-AS1 Gene

Function for SIX3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SIX3-AS1 Gene

Localization for SIX3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SIX3-AS1 Gene

Pathways & Interactions for SIX3-AS1 Gene

SuperPathways for SIX3-AS1 Gene

No Data Available

Interacting Proteins for SIX3-AS1 Gene

Gene Ontology (GO) - Biological Process for SIX3-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SIX3-AS1 Gene

Drugs & Compounds for SIX3-AS1 Gene

No Compound Related Data Available

Transcripts for SIX3-AS1 Gene

mRNA/cDNA for SIX3-AS1 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SIX3-AS1 Gene

SIX3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SIX3-AS1 Gene

No ASD Table

Relevant External Links for SIX3-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SIX3-AS1 Gene

mRNA expression in normal human tissues for SIX3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SIX3-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x13.5), Brain - Caudate (basal ganglia) (x10.7), Brain - Putamen (basal ganglia) (x8.9), and Pituitary (x8.2).

SOURCE GeneReport for Unigene cluster for SIX3-AS1 Gene:

genes like me logo Genes that share expression patterns with SIX3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SIX3-AS1 Gene

Orthologs for SIX3-AS1 Gene

Evolution for SIX3-AS1 Gene

Gene Tree for SIX3-AS1 (if available)
Gene Tree for SIX3-AS1 (if available)

No data available for Orthologs for SIX3-AS1 Gene

Paralogs for SIX3-AS1 Gene

No data available for Paralogs for SIX3-AS1 Gene

Variants for SIX3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SIX3-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs189643220 -- 44,939,708(+) TTGGC(A/T)GGTCT downstream-variant-500B
rs577606601 -- 44,939,660(+) AGGAG(A/G)AGAGG downstream-variant-500B
rs760721058 -- 44,939,710(+) GGCAG(A/G)TCTTC downstream-variant-500B
rs571252692 -- 44,939,703(+) GGGGC(G/T)TGGCA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SIX3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv457207 CNV loss 19166990
nsv526534 CNV loss 19592680
nsv581702 CNV loss 21841781
nsv953779 CNV deletion 24416366

Relevant External Links for SIX3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SIX3-AS1 Gene

Disorders for SIX3-AS1 Gene

Relevant External Links for SIX3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SIX3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SIX3-AS1 Gene

Publications for SIX3-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 65

Products for SIX3-AS1 Gene

Sources for SIX3-AS1 Gene

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