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Aliases for SIX3-AS1 Gene

Subcategory (RNA class) for SIX3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SIX3-AS1 Gene

  • SIX3 Antisense RNA 1 2 3
  • SIX3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SIX3-AS1 Gene

ORGUL Members for SIX3-AS1 Gene

Summaries for SIX3-AS1 Gene

GeneCards Summary for SIX3-AS1 Gene

SIX3-AS1 (SIX3 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SIX3-AS1 Gene

Genomics for SIX3-AS1 Gene

Genomic Location for SIX3-AS1 Gene

Start:
44,940,154 bp from pter
End:
44,941,878 bp from pter
Size:
1,725 bases
Orientation:
Minus strand

Genomic View for SIX3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SIX3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIX3-AS1 Gene

No data available for Regulatory Elements for SIX3-AS1 Gene

Proteins for SIX3-AS1 Gene

Post-translational modifications for SIX3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SIX3-AS1 Gene

Domains for SIX3-AS1 Gene

Gene Families for SIX3-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with SIX3-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SIX3-AS1 Gene

Function for SIX3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SIX3-AS1 Gene

Localization for SIX3-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for SIX3-AS1 Gene

Pathways for SIX3-AS1 Gene

SuperPathways for SIX3-AS1 Gene

No Data Available

Interacting Proteins for SIX3-AS1 Gene

Gene Ontology (GO) - Biological Process for SIX3-AS1 Gene

None

No data available for Pathways by source for SIX3-AS1 Gene

Transcripts for SIX3-AS1 Gene

mRNA/cDNA for SIX3-AS1 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SIX3-AS1 Gene

SIX3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SIX3-AS1 Gene

No ASD Table

Relevant External Links for SIX3-AS1 Gene

GeneLoc Exon Structure for
SIX3-AS1
ECgene alternative splicing isoforms for
SIX3-AS1

Expression for SIX3-AS1 Gene

mRNA expression in normal human tissues for SIX3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SIX3-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (13.5), Brain - Caudate (basal ganglia) (10.7), Brain - Putamen (basal ganglia) (8.9), and Pituitary (8.2).

SOURCE GeneReport for Unigene cluster for SIX3-AS1 Gene Hs.503113

genes like me logo Genes that share expressions with SIX3-AS1: view

Orthologs for SIX3-AS1 Gene

Evolution for SIX3-AS1 Gene

ENSEMBL:
Gene Tree for SIX3-AS1 (if available)
TreeFam:
Gene Tree for SIX3-AS1 (if available)

No data available for Orthologs for SIX3-AS1 Gene

Paralogs for SIX3-AS1 Gene

No data available for Paralogs for SIX3-AS1 Gene

Variants for SIX3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SIX3-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs163535 -- 44,939,777(+) GGCTG(C/T)CTCTG downstream-variant-500B
rs163536 -- 44,939,788(+) GCTAA(A/G)TGAGC downstream-variant-500B
rs163537 -- 44,939,814(+) GCCGG(A/G)CCCAG downstream-variant-500B
rs142702309 -- 44,939,802(+) TATTG(A/G)CCCCT downstream-variant-500B
rs189643220 -- 44,939,708(+) TTGGC(A/T)GGTCT downstream-variant-500B

Relevant External Links for SIX3-AS1 Gene

HapMap Linkage Disequilibrium report
SIX3-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SIX3-AS1 Gene

Disorders for SIX3-AS1 Gene

No disorders were found for SIX3-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SIX3-AS1 Gene

Publications for SIX3-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for SIX3-AS1 Gene

Sources for SIX3-AS1 Gene

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