SIRT1 Gene
protein-coding GIFtS : 66
GC10P069314
sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae) (Previous names: sirtuin (silent mating type information regulation 2, S. cerevisiae, homolog) 1 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for SIRT1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.5.1.- 3 OTTHUMP00000019691 2 OTTHUMP00000060745 2 SIR2L1 1 , 2 , 3 , 5 SIR2alpha 2 hSIR2 3 hSIRT1 3
Descriptions SIR2-like protein 1 3 sir2-like 1 2 sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae) 2 sirtuin (silent mating type information regulation 2, S. cerevisiae, homolog) 1 1 sirtuin 1 2 sirtuin type 1 2
Search outside databases for aliases for SIRT1 genePrevious GC identifers: GC10P068455 GC10P068731 GC10P069536 GC10P068989
Summaries for SIRT1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for SIRT1 : This gene encodes a member of the sirtuin family of proteins, homologs to the yeast Sir2 protein.Members of the sirtuin family are characterized by a sirtuin core domain and grouped into fourclasses. The functions of human sirtuins have not yet been determined; however, yeast sirtuinproteins are known to regulate epigenetic gene silencing and suppress recombination of rDNA.Studies suggest that the human sirtuins may function as intracellular regulatory proteins withmono-ADP-ribosyltransferase activity. The protein encoded by this gene is included in class I ofthe sirtuin family. Alternative splicing results in multiple transcript variants. [provided byRefSeq] UniProtKB/Swiss-Prot: SIRT1_HUMAN, Q96EB6 Function : NAD-dependent deacetylase, which regulates processes such as apoptosis and muscledifferentiation by deacetylating key proteins. Deacetylates 'Lys-382' of p53/TP53 and impairs itsability to induce proapoptotic program and modulate cell senescence. Deacetylates TAF1B andthereby represses rDNA transcription by the RNA polymerase I. Involved in HES1- and HEY2-mediatedtranscriptional repression. Inhibits skeletal muscle differentiation by deacetylating PCAF andMYOD1. May serve as a sensor of the cytosolic ratio of NAD(+)/NADH, which is essential in skeletalmuscle cell differentiation. Despite some ability to deacetylate histones in vitro, such activityis either weak or inexistent in vivo. In case of HIV-1 infection, interacts with and deacetylatesthe viral Tat protein
Gene Wiki entry for SIRT1 (Sirtuin_1)
Genomic Location for SIRT1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SIRT1 gene Entrez Gene cytogenetic band: 10q21.3 Ensembl cytogenetic band: 10q21.3 HGNC cytogenetic band: 10q21 SIRT1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P069314:
(about GC identifiers )
Start:
69,314,433 bp from pter
End:
69,348,153 bp from pter
Size:
33,721 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000010.9 NT_008583.16 Proteins for SIRT1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SIRT1_HUMAN, Q96EB6 (See
protein sequence )Recommended Name: NAD-dependent deacetylase sirtuin-1 Size : 747 amino acids; 81681 Da
Cofactor : Binds 1 zinc ion per subunit (By similarity)
Subunit : Interacts with TAF1B. Found in a complex with PCAF and MYOD1 (By similarity). Interactswith MLLT7/FOXO4, HES1, HEY2, p53/TP53 and PML. Interacts with RPS19BP1/AROS
Subcellular location : Nucleus. Note=Recruited to the nuclear bodies via its interaction with PML
Miscellaneous : Red wine, which contains resveratrol, may participate in activation of sirtuinproteins, and may therefore participate in an extended lifespan as it has been observed in yeast
Secondary accessions : Q2XNF6 Q5JVQ0 Q9GZR9 Q9Y6F0
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001135970.1 NP_036370.2 ENSEMBL proteins: ENSP00000384063 ENSP00000384508 ENSP00000212015 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for SIRT1: Assays for SIRT1:
Protein
Domains/ Families for SIRT1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q96EB6 ProtoNet protein and cluster: Q96EB6
1 Blocks protein family : IPB003000 Silent information regulator protein Sir2 UniProtKB/Swiss-Prot: SIRT1_HUMAN, Q96EB6 Similarity : Belongs to the sirtuin familySimilarity : Contains 1 deacetylase sirtuin-type domain
Gene Function for SIRT1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (SIRT1 ) Millipore RNAi Products for the Analysis of SIRT1 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (SIRT1 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001142498 Applied Biosystems Silencer ® siRNAs for SIRT1 Sigma-Aldrich siRNA and siRNA Panels for SIRT1 Sigma-Aldrich shRNA Panels and shRNA for SIRT1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001142498                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001142498                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001142498  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_012238 UniProtKB/Swiss-Prot: SIRT1_HUMAN, Q96EB6 Function : NAD-dependent deacetylase, which regulates processes such as apoptosis and muscledifferentiation by deacetylating key proteins. Deacetylates 'Lys-382' of p53/TP53 and impairs itsability to induce proapoptotic program and modulate cell senescence. Deacetylates TAF1B andthereby represses rDNA transcription by the RNA polymerase I. Involved in HES1- and HEY2-mediatedtranscriptional repression. Inhibits skeletal muscle differentiation by deacetylating PCAF andMYOD1. May serve as a sensor of the cytosolic ratio of NAD(+)/NADH, which is essential in skeletalmuscle cell differentiation. Despite some ability to deacetylate histones in vitro, such activityis either weak or inexistent in vivo. In case of HIV-1 infection, interacts with and deacetylatesthe viral Tat protein Catalytic activity : NAD(+) + an acetylprotein = nicotinamide + O-acetyl-ADP-ribose + a proteinEnzyme regulation : Inhibited by nicotinamide. Activated by resveratrol(3,5,4'-trihydroxy-trans-stilbene), butein (3,4,2',4'-tetrahydroxychalcone), piceatannol(3,5,3',4'-tetrahydroxy-trans-stilbene), Isoliquiritigenin (4,2',4'-trihydroxychalcone), fisetin(3,7,3',4'-tetrahydroxyflavone) and quercetin (3,5,7,3',4'-pentahydroxyflavone). RPS19BP1/AROSacts as a positive regulator of deacetylation activity Enzyme Number (IUBMB): EC 3.5.1.-
15/23 MGI mutant phenotypes (inferred from 9 alleles ) (MGI details for Sirt1) (see all 23
):5/12 Gene Ontology (GO) molecular function terms (links to tree view) (see all 12
):
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Pathways & Interactions for SIRT1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for SIRT1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for SIRT1 5/116 Interacting proteins for SIRT1 (ENSP00000212015 3 Q96EB6 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 116
)About this table 5/30 Gene Ontology (GO) biological process terms (links to tree view) (see all 30
):
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Drugs & Compounds for SIRT1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for SIRT1
Sigma-Aldrich Small Molecules for SIRT1:Inhibitor
Compounds for SIRT1 available from Tocris Bioscience Compound Action
CAS
number Sirtinol Selective sirtuin family deacetylase inhibitor [410536-97-9] EX 527 Selective SIRT1 inhibitor [49843-98-3] Splitomicin Sir2p inhibitor [5690-03-9]
About this table 8 Novoseek chemical compound relationships for SIRT1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
nad+
73.81
27
17595514 (2), 19188449 (2), 16328012 (1), 19060927 (1) (see all 9 )
lysine
49.17
2
15744310 (1), 17098745 (1)
nadh
32.86
1
19188449 (1)
lipid
15.29
8
17936707 (2), 17646659 (2), 18820948 (1), 18239056 (1) (see all 5 )
fatty acid
9.52
6
17646659 (2), 18709650 (1)
glucose
6.45
19
18423418 (4), 19071085 (3), 17646659 (3), 15744310 (3) (see all 8 )
oxygen
0.00
1
18922599 (1), 19303870 (1)
nitric oxide
0.00
1
19260974 (1), 19149606 (1)
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Transcripts for SIRT1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (SIRT1 ) Millipore RNAi Products for the Analysis of SIRT1 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (SIRT1 )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001142498 Sigma-Aldrich siRNA and siRNA Panels for SIRT1 Sigma-Aldrich shRNA Panels and shRNA for SIRT1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001142498 NM_012238
REFSEQ mRNAs for SIRT1 gene (2 alternative transcripts): NM_001142498.1 NM_012238.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001142498 NM_012238
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001142498                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001142498                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001142498  
Additional cDNA sequence: AF083106.2 AF235040.1 AK027686.1 AK074805.1 AK289743.1 AL136741.1 BC012499.1 BX648554.1
7 DOTS entries : DT.312320 DT.100749000 DT.97824709 DT.100748999 DT.100658352 DT.91751505 DT.121247108
24/87 AceView cDNA sequences (see all 87
):AF235040 BU186744 BQ219206 AI367389 AA461259 BF445130 BM980158 CK820052 BM273130 AI282390 BU735905 BM354077 BQ632248 AA828109 NM_012238 AF083106 AW615289 AA452304 AA608812 BQ025488 AI378978 AW007728 BI520244 R86123
highest scoring ESTs for SIRT1 :AA460952 AI381553 AL042303 AA044634 AA044761 AA251252 AA452304 AA608812 AA782231 AA971929
Unigene Cluster for SIRT1: Sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae) Hs.369779 [show with all ESTs ] Unigene Representative Sequence: NM_012238 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for SIRT1 (see all 6
) ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10 SP1 :                 -                   SP2 :                                   SP3 :                 -   -                 SP4 :                 -   -                 SP5 :     -   -   -         -   -                
About this scheme ECgene alternative splicing isoforms for SIRT1 3 Ensembl transcripts including schematic representations : ENST00000403579
ENST00000406900
ENST00000212015
Expression for SIRT1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SIRT1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SIRT1 1 / 2 / 3
5 probe-sets matching SIRT1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.369779 UniProtKB/Swiss-Prot: SIRT1_HUMAN, Q96EB6 Tissue specificity : Widely expressed
Orthologs for SIRT1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SIRT1 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for SIRT1 ENSEMBL Gene Tree for SIRT1 Paralogs for SIRT1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SIRT1 gene SIRT2 2 SIRT3 2
SNPs/Variants for SIRT1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SIRT1 (up to first 250kb)
Disorders & Mutations for SIRT1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 604479 6 Novoseek disease relationships for SIRT1 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
cancer
31.08
27
16596166 (3), 16288037 (3), 19149601 (2), 18838864 (2) (see all 10 )
neurodegeneration
22.70
2
17581637 (2), 17936707 (1), 19173742 (1), 18838864 (1) (see all 5 )
tumors
6.72
8
19047049 (3), 12297502 (1), 19285066 (1), 16596166 (1) (see all 6 )
metabolic disorder
4.02
3
19260974 (2), 17646659 (1)
cardiovascular diseases
0.00
6
19260974 (2)
stroke
0.00
1
18537630 (1)
About this table 1 PharmGKB disease relationship for SIRT1 gene About this table Genetic Association Database: SIRT1 Human Genome Epidemiology Navigator: SIRT1 (11 documents)
Medical News for SIRT1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SIRT1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/202 PubMed articles for SIRT1 gene (see all 202
): Characterization of five human cDNAs with homology to the yeast SIR2 gene: Sir2-like proteins (sirtuins) metabolize NAD and may have protein ADP-ribosyltransferase activity. (PubMed id 10381378) 2, 3, 4 Frye R.A. (1999) Sirtuin 1 (SIRT1) sequence variation is not associated with exceptional human longevity. (PubMed id 16257164) 1, 3, 6 Flachsbart F....Nebel A. (2006) SIRT1 regulates HIV transcription via Tat deacetylation. (PubMed id 15719057) 1, 3, 4 Pagans S.... Ott M. (2005) Active regulator of SIRT1 cooperates with SIRT1 and facilitates suppression of p53 activity. (PubMed id 17964266) 1, 3, 4 Kim E.J....Um S.J. (2007) Inhibition of silencing and accelerated aging by nicotinamide, a putative negative regulator of yeast sir2 and human SIRT1. (PubMed id 12297502) 1, 3, 4 Bitterman K.J....Sinclair D.A. (2002) A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243) 3, 4 Beausoleil S.A.... Gygi S.P. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) FOXO4 is acetylated upon peroxide stress and deacetylated by the longevity protein hSir2(SIRT1). (PubMed id 15126506) 3, 4 van der Horst A.... Burgering B.M.T. (2004) The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054) 3, 4 Deloukas P.... Rogers J. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 3, 4 Beausoleil S.A....Gygi S.P. (2004)
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Genome Databases showing SIRT1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SIRT1
(According to HUGE )
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Specialized Databases showing SIRT1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
NIEHS-SNPs http://egp.gs.washington.edu/data/sirt1/
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-- Services for SIRT1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for SIRT1:
Antibodies & Assays for SIRT1  
Tocris compounds for SIRT1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009