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Aliases for SIMC1 Gene

Aliases for SIMC1 Gene

  • SUMO-Interacting Motifs Containing 1 2 3
  • Platform Element For Inhibition Of Autolytic Degradation 2 3
  • Oocyte Maturation Associated 1 2 3
  • C5orf25 3 4
  • SUMO-Interacting Motif-Containing Protein 1 3
  • Chromosome 5 Open Reading Frame 25 2
  • PLEIAD 3
  • OOMA1 3

External Ids for SIMC1 Gene

Previous HGNC Symbols for SIMC1 Gene

  • C5orf25

Previous GeneCards Identifiers for SIMC1 Gene

  • GC05P175666
  • GC05P175675

Summaries for SIMC1 Gene

GeneCards Summary for SIMC1 Gene

SIMC1 (SUMO-Interacting Motifs Containing 1) is a Protein Coding gene. GO annotations related to this gene include SUMO polymer binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SIMC1 Gene

Genomics for SIMC1 Gene

Genomic Location for SIMC1 Gene

Start:
176,238,367 bp from pter
End:
176,345,991 bp from pter
Size:
107,625 bases
Orientation:
Plus strand

Genomic View for SIMC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SIMC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIMC1 Gene

No data available for Regulatory Elements for SIMC1 Gene

Proteins for SIMC1 Gene

  • Protein details for SIMC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NDZ2-SIMC1_HUMAN
    Recommended name:
    SUMO-interacting motif-containing protein 1
    Protein Accession:
    Q8NDZ2
    Secondary Accessions:
    • J3KQQ8
    • Q6NXN8
    • Q6ZTU4
    • Q8IZ15

    Protein attributes for SIMC1 Gene

    Size:
    872 amino acids
    Molecular mass:
    96838 Da
    Quaternary structure:
    • Interacts (via SIM domains) with SUMO1 and SUMO2.

    Alternative splice isoforms for SIMC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SIMC1 Gene

Proteomics data for SIMC1 Gene at MOPED

Post-translational modifications for SIMC1 Gene

  • Ubiquitination at Lys543
  • Modification sites at PhosphoSitePlus

Other Protein References for SIMC1 Gene

No data available for DME Specific Peptides for SIMC1 Gene

Domains for SIMC1 Gene

Protein Domains for SIMC1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SIMC1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SIMC1 Gene

Function for SIMC1 Gene

Gene Ontology (GO) - Molecular Function for SIMC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032184 SUMO polymer binding IDA 23086935
genes like me logo Genes that share ontologies with SIMC1: view

miRNA for SIMC1 Gene

miRTarBase miRNAs that target SIMC1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SIMC1 Gene

Localization for SIMC1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SIMC1 Gene

Pathways for SIMC1 Gene

SuperPathways for SIMC1 Gene

No Data Available

Interacting Proteins for SIMC1 Gene

Gene Ontology (GO) - Biological Process for SIMC1 Gene

None

No data available for Pathways by source for SIMC1 Gene

Transcripts for SIMC1 Gene

Unigene Clusters for SIMC1 Gene

SUMO-interacting motifs containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SIMC1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP1: - - -
SP2: -
SP3: -
SP4:

Relevant External Links for SIMC1 Gene

GeneLoc Exon Structure for
SIMC1
ECgene alternative splicing isoforms for
SIMC1

Expression for SIMC1 Gene

mRNA expression in normal human tissues for SIMC1 Gene

mRNA differential expression in normal tissues according to GTEx for SIMC1 Gene

This gene is overexpressed in Ovary (4.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SIMC1 Gene

SOURCE GeneReport for Unigene cluster for SIMC1 Gene Hs.719847

genes like me logo Genes that share expressions with SIMC1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SIMC1 Gene

Orthologs for SIMC1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SIMC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SIMC1 35
  • 99.76 (n)
  • 99.76 (a)
SIMC1 36
  • 49 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SIMC1 35
  • 88.23 (n)
  • 93.09 (a)
SIMC1 36
  • 40 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SIMC1 35
  • 92.01 (n)
  • 95.16 (a)
SIMC1 36
  • 43 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Simc1 35
  • 87.6 (n)
  • 93.1 (a)
Simc1 16
Simc1 36
  • 28 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 35 (a)
OneToMany
-- 36
  • 49 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Simc1 35
  • 87.77 (n)
  • 94.33 (a)
chicken
(Gallus gallus)
Aves SIMC1 36
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SIMC1 36
  • 38 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SIMC1 36
  • 19 (a)
OneToOne
Species with no ortholog for SIMC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SIMC1 Gene

ENSEMBL:
Gene Tree for SIMC1 (if available)
TreeFam:
Gene Tree for SIMC1 (if available)

Paralogs for SIMC1 Gene

Pseudogenes.org Pseudogenes for SIMC1 Gene

genes like me logo Genes that share paralogs with SIMC1: view

No data available for Paralogs for SIMC1 Gene

Variants for SIMC1 Gene

Sequence variations from dbSNP and Humsavar for SIMC1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs180509 -- 176,316,901(+) AGAAT(A/C)ATTTG intron-variant
rs180510 -- 176,324,000(+) AAAAA(A/T)AAAAA intron-variant
rs186896 -- 176,323,994(+) AAAAA(A/T)AAAAA intron-variant
rs191476 -- 176,316,603(+) agaat(C/T)gcttg intron-variant
rs342010 -- 176,318,829(+) tagtc(A/G)ggcgt intron-variant

Relevant External Links for SIMC1 Gene

HapMap Linkage Disequilibrium report
SIMC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SIMC1 Gene

Disorders for SIMC1 Gene

No disorders were found for SIMC1 Gene.

No data available for UniProtKB/Swiss-Prot for SIMC1 Gene

Publications for SIMC1 Gene

  1. PolySUMO-binding proteins identified through a string search. (PMID: 23086935) Sun H. … Hunter T. (J. Biol. Chem. 2012) 2 3 4
  2. PLEIAD/SIMC1/C5orf25, a novel autolysis regulator for a skeletal-muscle-specific calpain, CAPN3, scaffolds a CAPN3 substrate, CTBP1. (PMID: 23707407) Ono Y. … Sorimachi H. (J. Mol. Biol. 2013) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry. (PMID: 15144186) Brill L.M. … Peters E.C. (Anal. Chem. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for SIMC1 Gene

Sources for SIMC1 Gene

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