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Aliases for SIK3 Gene

Aliases for SIK3 Gene

  • SIK Family Kinase 3 2 3 5
  • Serine/Threonine-Protein Kinase QSK 3 4
  • Salt-Inducible Kinase 3 3 4
  • EC 2.7.11.1 4 61
  • SIK-3 3 4
  • QSK 3 4
  • Serine/Threonine-Protein Kinase SIK3 3
  • EC 2.7.11 61
  • KIAA0999 4
  • L19 3

External Ids for SIK3 Gene

Previous GeneCards Identifiers for SIK3 Gene

  • GC11M116222
  • GC11M116714
  • GC11M112646

Summaries for SIK3 Gene

GeneCards Summary for SIK3 Gene

SIK3 (SIK Family Kinase 3) is a Protein Coding gene. Among its related pathways are LKB1 signaling events. GO annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity. An important paralog of this gene is SIK2.

Gene Wiki entry for SIK3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SIK3 Gene

Genomics for SIK3 Gene

Regulatory Elements for SIK3 Gene

Enhancers for SIK3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G116983 1.7 FANTOM5 Ensembl ENCODE dbSUPER 20.2 +112.4 112391 5.1 PKNOX1 FOXA2 ZNF133 SIN3A RAD21 RARA YY1 FOS ETV6 IKZF2 LOC653303 SIK3 ENSG00000224077 APOA1 PCSK7 RNF214 GC11P117017
GH11G116978 1.8 FANTOM5 Ensembl ENCODE dbSUPER 17.7 +117.6 117609 4.0 HDAC1 PKNOX1 FEZF1 RAD21 GATA2 ZSCAN5C FOS RELB ETV6 IKZF2 LOC653303 SIK3 APOA1 ENSG00000224077 TAGLN GC11P117017
GH11G117070 1.6 Ensembl ENCODE dbSUPER 19.8 +25.8 25752 3.6 PKNOX1 FOXA2 MLX ARNT ARID4B FEZF1 YY1 ZNF766 FOS SP3 SIK3 LOC653303 ENSG00000224077 TAGLN APOA1 GC11M117070
GH11G116851 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.4 +245.0 244989 4.9 HDGF WRNIP1 FEZF1 GATA2 ZNF143 ZNF207 KLF7 FOS YY2 JUNB LOC653303 SIK3 APOA1 APOC3 APOA4 ENSG00000236267 APOA5 ZPR1 ENSG00000224077 ENSG00000226645
GH11G116924 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.2 +169.1 169139 9.8 PKNOX1 FOXA2 CBX3 RAD21 RARA YY1 SCRT2 CREM CBFB JUNB LOC653303 APOA1 SIK3 ENSG00000224077 PCSK7 TAGLN GC11P117017
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SIK3 on UCSC Golden Path with GeneCards custom track

Promoters for SIK3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000045470 453 2001 HDGF ARNT WRNIP1 ARID4B SIN3A ZNF2 YY1 ZNF207 FOS KLF13

Genomic Location for SIK3 Gene

Chromosome:
11
Start:
116,843,402 bp from pter
End:
117,098,453 bp from pter
Size:
255,052 bases
Orientation:
Minus strand

Genomic View for SIK3 Gene

Genes around SIK3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SIK3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SIK3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIK3 Gene

Proteins for SIK3 Gene

  • Protein details for SIK3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2K2-SIK3_HUMAN
    Recommended name:
    Serine/threonine-protein kinase SIK3
    Protein Accession:
    Q9Y2K2
    Secondary Accessions:
    • A1A5A8
    • Q59FY2
    • Q5M9N1
    • Q6P3R6
    • Q8IYM8
    • Q9HA50

    Protein attributes for SIK3 Gene

    Size:
    1263 amino acids
    Molecular mass:
    139980 Da
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
    Quaternary structure:
    • Binds to and is activated by YWHAZ when phosphorylated on Thr-163.
    SequenceCaution:
    • Sequence=AAT06749.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAA76843.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB14006.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SIK3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SIK3 Gene

Selected DME Specific Peptides for SIK3 Gene

Q9Y2K2:
  • LYQVMET
  • TIGKGNFA
  • GPKVDIW
  • LVAHGRM
  • KIIDKTQL
  • GNFAVVK
  • EYASGGE
  • VLYVLVCG
  • VAIKIID
  • GSPPYAAPE
  • IVHRDLK

Post-translational modifications for SIK3 Gene

  • Phosphorylated at Thr-163 by STK11/LKB1 in complex with STE20-related adapter-alpha (STRADA) pseudo kinase and CAB39.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Domains & Families for SIK3 Gene

Gene Families for SIK3 Gene

Suggested Antigen Peptide Sequences for SIK3 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y2K2

UniProtKB/Swiss-Prot:

SIK3_HUMAN :
  • Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.
Family:
  • Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.
genes like me logo Genes that share domains with SIK3: view

Function for SIK3 Gene

Molecular function for SIK3 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + a protein = ADP + a phosphoprotein.
UniProtKB/Swiss-Prot EnzymeRegulation:
Activated by phosphorylation on Thr-163.

Enzyme Numbers (IUBMB) for SIK3 Gene

Gene Ontology (GO) - Molecular Function for SIK3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000287 magnesium ion binding IDA 14976552
GO:0004674 protein serine/threonine kinase activity IDA 14976552
GO:0005515 protein binding IPI 16306228
GO:0005524 ATP binding IDA,IEA 14976552
genes like me logo Genes that share ontologies with SIK3: view
genes like me logo Genes that share phenotypes with SIK3: view

Animal Models for SIK3 Gene

MGI Knock Outs for SIK3:

Animal Model Products

  • Taconic Biosciences Mouse Models for SIK3

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SIK3 Gene

Localization for SIK3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SIK3 Gene

Cytoplasm. Note=Locates to punctate structures within the cytoplasm on binding to YWHAZ.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SIK3 gene
Compartment Confidence
nucleus 4
cytosol 3
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for SIK3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with SIK3: view

Pathways & Interactions for SIK3 Gene

SuperPathway Contained pathways
1 LKB1 signaling events
genes like me logo Genes that share pathways with SIK3: view

Pathways by source for SIK3 Gene

1 BioSystems pathway for SIK3 Gene

SIGNOR curated interactions for SIK3 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for SIK3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 protein phosphorylation IEA,IDA 14976552
genes like me logo Genes that share ontologies with SIK3: view

Drugs & Compounds for SIK3 Gene

(2) Drugs for SIK3 Gene - From: ApexBio and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
HG-9-91-01 Pharma Pan-SIK (salt-inducible kinases) inhibitor 0
Magnesium Nutra 0

(1) ApexBio Compounds for SIK3 Gene

Compound Action Cas Number
HG-9-91-01 Pan-SIK (salt-inducible kinases) inhibitor 1456858-58-4
genes like me logo Genes that share compounds with SIK3: view

Drug Products

Transcripts for SIK3 Gene

Unigene Clusters for SIK3 Gene

SIK family kinase 3:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for SIK3 Gene

No ASD Table

Relevant External Links for SIK3 Gene

GeneLoc Exon Structure for
SIK3
ECgene alternative splicing isoforms for
SIK3

Expression for SIK3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SIK3 Gene

Protein differential expression in normal tissues from HIPED for SIK3 Gene

This gene is overexpressed in Lung (13.4), Peripheral blood mononuclear cells (9.0), Frontal cortex (7.1), and Testis (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SIK3 Gene



Protein tissue co-expression partners for SIK3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SIK3 Gene:

SIK3

SOURCE GeneReport for Unigene cluster for SIK3 Gene:

Hs.167451

Evidence on tissue expression from TISSUES for SIK3 Gene

  • Nervous system(4.6)
  • Liver(4.3)
  • Lung(2.5)
genes like me logo Genes that share expression patterns with SIK3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SIK3 Gene

Orthologs for SIK3 Gene

This gene was present in the common ancestor of animals.

Orthologs for SIK3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SIK3 34 35
  • 99.68 (n)
dog
(Canis familiaris)
Mammalia SIK3 34 35
  • 90.32 (n)
cow
(Bos Taurus)
Mammalia SIK3 34 35
  • 89.82 (n)
mouse
(Mus musculus)
Mammalia Sik3 34 16 35
  • 88.25 (n)
rat
(Rattus norvegicus)
Mammalia Sik3 34
  • 88.11 (n)
oppossum
(Monodelphis domestica)
Mammalia SIK3 35
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SIK3 35
  • 78 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 35
  • 79 (a)
OneToMany
LOC777317 34
  • 78.73 (n)
-- 35
  • 78 (a)
OneToMany
-- 35
  • 77 (a)
OneToMany
-- 35
  • 76 (a)
OneToMany
-- 35
  • 76 (a)
OneToMany
-- 35
  • 76 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SIK3 35
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sik3 34
  • 71.49 (n)
zebrafish
(Danio rerio)
Actinopterygii SIK3 35
  • 76 (a)
OneToOne
zgc:66101 34
  • 65.45 (n)
zgc66101 34
fruit fly
(Drosophila melanogaster)
Insecta Sik2 35
  • 29 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea kin-29 35
  • 27 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 52 (a)
OneToOne
Species where no ortholog for SIK3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SIK3 Gene

ENSEMBL:
Gene Tree for SIK3 (if available)
TreeFam:
Gene Tree for SIK3 (if available)

Paralogs for SIK3 Gene

genes like me logo Genes that share paralogs with SIK3: view

Variants for SIK3 Gene

Sequence variations from dbSNP and Humsavar for SIK3 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
VAR_035634 A breast cancer sample
VAR_035635 A breast cancer sample
rs1000002222 -- 117,005,378(+) TCTTC(A/G)CAAAC intron-variant
rs1000012303 -- 116,920,631(+) CACTT(C/G)CTGGA intron-variant
rs1000024841 -- 116,969,191(+) AGGCT(A/G)AGGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SIK3 Gene

Variant ID Type Subtype PubMed ID
dgv2185n54 CNV loss 21841781
dgv245e199 CNV deletion 23128226
dgv245n67 CNV loss 20364138
dgv729n106 CNV tandem duplication 24896259
esv1183056 CNV insertion 17803354
esv24446 CNV loss 19812545
esv2678480 CNV deletion 23128226
esv3303435 CNV mobile element insertion 20981092
esv3323959 CNV insertion 20981092
esv3379224 CNV insertion 20981092
esv3548401 CNV deletion 23714750
esv3627836 CNV loss 21293372
esv3627837 CNV loss 21293372
esv3627841 CNV loss 21293372
esv3627843 CNV loss 21293372
nsv1050142 CNV loss 25217958
nsv1136139 CNV deletion 24896259
nsv1144595 CNV deletion 24896259
nsv507620 OTHER sequence alteration 20534489
nsv556451 CNV loss 21841781
nsv556454 CNV loss 21841781
nsv556455 CNV loss 21841781
nsv7223 OTHER inversion 18451855
nsv832280 CNV gain+loss 17160897
nsv952739 CNV duplication 24416366
nsv983064 CNV duplication 23825009

Variation tolerance for SIK3 Gene

Residual Variation Intolerance Score: 10.5% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SIK3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SIK3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SIK3 Gene

Disorders for SIK3 Gene

Relevant External Links for SIK3

Genetic Association Database (GAD)
SIK3
Human Genome Epidemiology (HuGE) Navigator
SIK3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SIK3

No disorders were found for SIK3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SIK3 Gene

Publications for SIK3 Gene

  1. Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10231032) Nagase T. … Ohara O. (DNA Res. 1999) 2 3 4 64
  2. Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis. (PMID: 22306654) Feenstra B. … Melbye M. (Nat. Genet. 2012) 3 46 64
  3. Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels. (PMID: 21149283) Oexle K. … Meitinger T. (Hum. Mol. Genet. 2011) 3 46 64
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  5. Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides. (PMID: 18193046) Kooner J.S. … Thompson J.F. (Nat. Genet. 2008) 3 46 64

Products for SIK3 Gene

  • Addgene plasmids for SIK3

Sources for SIK3 Gene

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