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Aliases for SIGLEC9 Gene

Aliases for SIGLEC9 Gene

  • Sialic Acid Binding Ig-Like Lectin 9 2 3
  • Protein FOAP-9 3 4
  • Siglec-9 3 4
  • CDw329 3 4
  • Sialic Acid-Binding Ig-Like Lectin 9 3
  • CD329 Antigen 4
  • OBBP-LIKE 3
  • FOAP-9 3
  • CD329 3

External Ids for SIGLEC9 Gene

Summaries for SIGLEC9 Gene

GeneCards Summary for SIGLEC9 Gene

SIGLEC9 (Sialic Acid Binding Ig-Like Lectin 9) is a Protein Coding gene. GO annotations related to this gene include carbohydrate binding. An important paralog of this gene is SIGLEC5.

UniProtKB/Swiss-Prot for SIGLEC9 Gene

  • Putative adhesion molecule that mediates sialic-acid dependent binding to cells. Preferentially binds to alpha-2,3- or alpha-2,6-linked sialic acid. The sialic acid recognition site may be masked by cis interactions with sialic acids on the same cell surface

Gene Wiki entry for SIGLEC9 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SIGLEC9 Gene

Genomics for SIGLEC9 Gene

Genomic Location for SIGLEC9 Gene

Start:
51,124,880 bp from pter
End:
51,139,053 bp from pter
Size:
14,174 bases
Orientation:
Plus strand

Genomic View for SIGLEC9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SIGLEC9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIGLEC9 Gene

Regulatory Elements for SIGLEC9 Gene

Proteins for SIGLEC9 Gene

  • Protein details for SIGLEC9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y336-SIGL9_HUMAN
    Recommended name:
    Sialic acid-binding Ig-like lectin 9
    Protein Accession:
    Q9Y336
    Secondary Accessions:
    • Q6GTU4
    • Q9BYI9

    Protein attributes for SIGLEC9 Gene

    Size:
    463 amino acids
    Molecular mass:
    50082 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SIGLEC9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SIGLEC9 Gene

Proteomics data for SIGLEC9 Gene at MOPED

Post-translational modifications for SIGLEC9 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn101, Asn138, Asn161, Asn225, Asn231, Asn238, Asn256, and Asn334

Other Protein References for SIGLEC9 Gene

No data available for DME Specific Peptides for SIGLEC9 Gene

Domains for SIGLEC9 Gene

Gene Families for SIGLEC9 Gene

HGNC:
  • CD :CD molecules
  • VSET :Immunoglobulin superfamily / V-set domain containing
  • IGD :Immunoglobulin superfamily / Immunoglobulin-like domain containing
  • SIGLEC :Sialic acid binding Ig-like lectins

Protein Domains for SIGLEC9 Gene

Suggested Antigen Peptide Sequences for SIGLEC9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y336

UniProtKB/Swiss-Prot:

SIGL9_HUMAN
Domain:
  • Contains 1 copy of a cytoplasmic motif that is referred to as the immunoreceptor tyrosine-based inhibitor motif (ITIM). This motif is involved in modulation of cellular responses. The phosphorylated ITIM motif can bind the SH2 domain of several SH2-containing phosphatases:
    • Q9Y336
  • Contains 2 Ig-like C2-type (immunoglobulin-like) domains.:
    • Q9Y336
  • Contains 1 Ig-like V-type (immunoglobulin-like) domain.:
    • Q9Y336
Family:
  • Belongs to the immunoglobulin superfamily. SIGLEC (sialic acid binding Ig-like lectin) family.:
    • Q9Y336
genes like me logo Genes that share domains with SIGLEC9: view

Function for SIGLEC9 Gene

Molecular function for SIGLEC9 Gene

UniProtKB/Swiss-Prot Function: Putative adhesion molecule that mediates sialic-acid dependent binding to cells. Preferentially binds to alpha-2,3- or alpha-2,6-linked sialic acid. The sialic acid recognition site may be masked by cis interactions with sialic acids on the same cell surface

Gene Ontology (GO) - Molecular Function for SIGLEC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0030246 carbohydrate binding NAS 10801860
genes like me logo Genes that share ontologies with SIGLEC9: view

Phenotypes for SIGLEC9 Gene

genes like me logo Genes that share phenotypes with SIGLEC9: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SIGLEC9 Gene

Localization for SIGLEC9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SIGLEC9 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SIGLEC9 Gene COMPARTMENTS Subcellular localization image for SIGLEC9 gene
Compartment Confidence
plasma membrane 5
extracellular 2
lysosome 1

Gene Ontology (GO) - Cellular Components for SIGLEC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane NAS 10801860
genes like me logo Genes that share ontologies with SIGLEC9: view

Pathways for SIGLEC9 Gene

SuperPathways for SIGLEC9 Gene

No Data Available

Interacting Proteins for SIGLEC9 Gene

Gene Ontology (GO) - Biological Process for SIGLEC9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007155 cell adhesion IEA --
GO:0007166 cell surface receptor signaling pathway NAS 10801860
genes like me logo Genes that share ontologies with SIGLEC9: view

No data available for Pathways by source for SIGLEC9 Gene

Transcripts for SIGLEC9 Gene

Unigene Clusters for SIGLEC9 Gene

Sialic acid binding Ig-like lectin 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SIGLEC9 Gene

No ASD Table

Relevant External Links for SIGLEC9 Gene

GeneLoc Exon Structure for
SIGLEC9
ECgene alternative splicing isoforms for
SIGLEC9

Expression for SIGLEC9 Gene

mRNA expression in normal human tissues for SIGLEC9 Gene

mRNA differential expression in normal tissues according to GTEx for SIGLEC9 Gene

This gene is overexpressed in Whole Blood (29.1) and Spleen (4.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SIGLEC9 Gene

SOURCE GeneReport for Unigene cluster for SIGLEC9 Gene Hs.245828

mRNA Expression by UniProt/SwissProt for SIGLEC9 Gene

Q9Y336-SIGL9_HUMAN
Tissue specificity: Expressed by peripheral blood leukocytes (neutrophils and monocytes but not eosinophils). Found in liver, fetal liver, bone marrow, placenta, spleen and in lower levels in skeletal muscle, fetal brain, stomach, lung, thymus, prostate, brain, mammary, adrenal gland, colon, trachea, cerebellum, testis, small intestine and spinal cordon
genes like me logo Genes that share expressions with SIGLEC9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for SIGLEC9 Gene

Orthologs for SIGLEC9 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SIGLEC9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SIGLEC13 36
  • 65 (a)
ManyToMany
SIGLEC9 35
  • 98.16 (n)
  • 96.7 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 65 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 49 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Siglece 35
  • 66.97 (n)
  • 54.63 (a)
Siglece 36
  • 46 (a)
OneToMany
Species with no ortholog for SIGLEC9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SIGLEC9 Gene

ENSEMBL:
Gene Tree for SIGLEC9 (if available)
TreeFam:
Gene Tree for SIGLEC9 (if available)

Paralogs for SIGLEC9 Gene

Selected SIMAP similar genes for SIGLEC9 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SIGLEC9: view

Variants for SIGLEC9 Gene

Sequence variations from dbSNP and Humsavar for SIGLEC9 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs200658 - 51,125,348(+) AGGAA(A/G)TATAA missense, reference
rs273687 - 51,125,616(+) CCCAA(A/C)ATCCT missense, reference
rs273688 - 51,127,228(+) TGCAG(A/C)TGAAT missense, reference
rs273689 -- 51,127,750(+) AAAAA(A/C)CCCAA intron-variant
rs273690 - 51,127,979(+) GGGGG(C/T)GGTCG missense, reference

Structural Variations from Database of Genomic Variants (DGV) for SIGLEC9 Gene

Variant ID Type Subtype PubMed ID
esv34104 CNV Loss 18971310
nsv912292 CNV Loss 21882294

Relevant External Links for SIGLEC9 Gene

HapMap Linkage Disequilibrium report
SIGLEC9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SIGLEC9 Gene

Disorders for SIGLEC9 Gene

Relevant External Links for SIGLEC9

Human Genome Epidemiology (HuGE) Navigator
SIGLEC9
genes like me logo Genes that share disorders with SIGLEC9: view

No data available for UniProtKB/Swiss-Prot for SIGLEC9 Gene

Publications for SIGLEC9 Gene

  1. Siglec-9, a novel sialic acid binding member of the immunoglobulin superfamily expressed broadly on human blood leukocytes. (PMID: 10801862) Zhang J.Q. … Crocker P.R. (J. Biol. Chem. 2000) 3 4 23
  2. Identification and molecular characterization of a novel member of the siglec family (SIGLEC9). (PMID: 10903842) Foussias G. … Diamandis E.P. (Genomics 2000) 2 3 4
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  4. Cloning, characterization, and phylogenetic analysis of siglec-9, a new member of the CD33-related group of siglecs. Evidence for co- evolution with sialic acid synthesis pathways. (PMID: 10801860) Angata T. … Varki A. (J. Biol. Chem. 2000) 3 4
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4

Products for SIGLEC9 Gene

Sources for SIGLEC9 Gene

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