SIGLEC9 Gene
protein-coding GIFtS: 52
GCID: GC19P051628
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sialic acid binding Ig-like lectin 9
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Aliases
for SIGLEC9 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Sialic Acid Binding Ig-Like Lectin 91 2 | | OBBP-LIKE2 | | CD3291 2 | | Sialic Acid-Binding Ig-Like Lectin 92 | | Protein FOAP-92 3 | | Siglec-93 | | CDw3292 3 | | Siglec-93 | | FOAP-92 | | CD329 Antigen3 |
Export aliases for SIGLEC9 gene to outside databasesPrevious GC identifers: GC19P052258 GC19P051989 GC19P056304 GC19P056319 GC19P047961 |
Summaries
for SIGLEC9 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: SIGL9_HUMAN, Q9Y336Function: Putative adhesion molecule that mediates sialic-acid dependent binding to cells. Preferentially binds toalpha-2,3- or alpha-2,6-linked sialic acid. The sialic acid recognition site may be masked by cis interactions withsialic acids on the same cell surface
Gene Wiki entry for SIGLEC9
|
Genomic Views
for SIGLEC9 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000019.9 NC_018930.1 NT_011109.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the SIGLEC9 gene promoter:
AP-1 HOXA3 AML1a STAT5A N-Myc PPAR-gamma1 ARP-1 STAT3 PPAR-gamma2 TGIF
Other transcription factors
Search SABiosciences Chromatin IP Primers for SIGLEC9
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SIGLEC9 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19q13.41 Ensembl cytogenetic band: 19q13.41 HGNC cytogenetic band: 19q13.3-q13.4SIGLEC9 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19P051628: view genomic region
(about GC identifiers)
Start:
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51,628,165 bp from pter |
End:
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51,639,520 bp from pter |
Size:
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11,356 bases |
Orientation:
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plus strand |
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Proteins
for SIGLEC9 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: SIGL9_HUMAN, Q9Y336 (See
protein sequence)Recommended Name: Sialic acid-binding Ig-like lectin 9 precursor Size: 463 amino acids; 50082 Da
Subcellular location: Membrane; Single-pass type I membrane protein
Secondary accessions: Q6GTU4 Q9BYI9Explore the universe of human proteins at neXtProt for SIGLEC9: NX_Q9Y336
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9Y336
SIGLEC9 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001185487.1 NP_055256.1
ENSEMBL proteins: ENSP00000413861 ENSP00000250360
Human Recombinant Protein Products for SIGLEC9:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table
SIGLEC9 for ontologies About GeneDecksing
SIGLEC9 Antibody Products:
Assay Products for SIGLEC9: |
Protein
Domains /
Families
for SIGLEC9 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
SIGLEC9 for domains About GeneDecksing
5 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9Y336ProtoNet protein and cluster: Q9Y336 1 Blocks protein family: IPB003599 Immunoglobulin subtype
UniProtKB/Swiss-Prot: SIGL9_HUMAN, Q9Y336Domain: Contains 1 copy of a cytoplasmic motif that is referred to as the immunoreceptor tyrosine-based inhibitor motif(ITIM). This motif is involved in modulation of cellular responses. The phosphorylated ITIM motif can bind the SH2domain of several SH2-containing phosphatasesSimilarity: Belongs to the immunoglobulin superfamily. SIGLEC (sialic acid binding Ig-like lectin) familySimilarity: Contains 2 Ig-like C2-type (immunoglobulin-like) domainsSimilarity: Contains 1 Ig-like V-type (immunoglobulin-like) domain |
Function
for SIGLEC9 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: SIGL9_HUMAN, Q9Y336Function: Putative adhesion molecule that mediates sialic-acid dependent binding to cells. Preferentially binds toalpha-2,3- or alpha-2,6-linked sialic acid. The sialic acid recognition site may be masked by cis interactions withsialic acids on the same cell surface Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table
SIGLEC9 for ontologies About GeneDecksing
Phenotypes:
3 GenomeRNAi human phenotypes for SIGLEC9:
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SIGLEC9 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SIGLEC9
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
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Synthesis Service for SIGLEC9 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SIGLEC9 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SIGLEC9 |
|
Pathways & Interactions
for SIGLEC9 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SIGLEC9
2 Interacting proteins for SIGLEC9 (Q9Y3363) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table
SIGLEC9 for ontologies About GeneDecksing
|
Drugs & Compounds
for SIGLEC9 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for SIGLEC9
Search CenterWatch for drugs/clinical trials and news about SIGLEC9 / SIGL9
|
Transcripts
for SIGLEC9 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for SIGLEC9 gene (2 alternative transcripts): NM_001198558.1 NM_014441.2 Unigene Cluster for SIGLEC9: Sialic acid binding Ig-like lectin 9 Hs.245828 [show with all ESTs]Unigene Representative Sequence: NM_0144412 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000440804(uc010yct.2) ENST00000250360(uc002pvu.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SIGLEC9 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SIGLEC9
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): SIGLEC9 (NM_014441) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SIGLEC9 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SIGLEC9 |
Additional cDNA sequence: AB026265.1 AF227924.1 AF247180.1 AK297043.1 AK315272.1 AY358913.1 BC035365.1 2 DOTS entries: DT.40300295 DT.95369040 24/26 AceView cDNA sequences (see all 26): AA936059 BU622649 AW139840 AF227924 BG483747 NM_014441 CA430269 AY358913 CB156435 BP347306 BI909956 AF247180 BU688064 BC035365 BI548551 CB529980 AW137995 BI822560 AW131386 AB026265 BX345663 CD691800 BI907683 BG540675
GeneLoc Exon Structure
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Expression
for SIGLEC9 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| SIGLEC9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: ACTGTCTTCC
About this image
See SIGLEC9 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SIGLEC9
SOURCE GeneReport for Unigene cluster: Hs.245828
UniProtKB/Swiss-Prot: SIGL9_HUMAN, Q9Y336Tissue specificity: Expressed by peripheral blood leukocytes (neutrophils and monocytes but not eosinophils). Found inliver, fetal liver, bone marrow, placenta, spleen and in lower levels in skeletal muscle, fetal brain, stomach, lung,thymus, prostate, brain, mammary, adrenal gland, colon, trachea, cerebellum, testis, small intestine and spinal cordon
SABiosciences Custom PCR Arrays for SIGLEC9
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SIGLEC9
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat SIGLEC9 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SIGLEC9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SIGLEC9 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SIGLEC9 |
Orthologs
for SIGLEC9 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for SIGLEC9 gene from 2/5 species (see all 5) About this table
ENSEMBL Gene Tree for SIGLEC9 (if available)
TreeFam Gene Tree for SIGLEC9 (if available) |
Paralogs
for SIGLEC9 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for SIGLEC9 gene
- CD332 SIGLEC17P2 SIGLEC82 SIGLEC52 SIGLEC162 SIGLEC112 SIGLEC62 SIGLEC142
- SIGLEC122 MAG2 SIGLEC102 SIGLEC72
9 SIMAP similar genes for SIGLEC9 using alignment to 2 protein entries: SIGL9_HUMAN (see all proteins):SIGLEC7 SIGLEC12 SIGLEC8 SIGLEC6 SIGLEC14 SIGLEC11
CD33 SIGLEC10 SIGLEC5
SIGLEC9 for paralogs About GeneDecksing
|
Genomic Variants
for SIGLEC9 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 19 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for SIGLEC9 (51628165 - 51639520 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for SIGLEC9
1 CNV: 48034 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SIGLEC9 |
|
Disorders
/ Diseases
for SIGLEC9 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
SIGLEC9 for disorders About GeneDecksing
OMIM gene information: 605640
OMIM disorders: --
8  diseases for SIGLEC9: About MalaCardsacute myeloid leukemia myeloid leukemia hepatitis b pneumonia
leukemia hepatitis prostatitis septic shock
Human Genome Epidemiology (HuGE) Navigator: SIGLEC9 (1 document)
Export disorders for SIGLEC9 gene to outside databases
|
Publications
for SIGLEC9 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for SIGLEC9 gene, integrated from 9 sources (see all 27):
(articles sorted by number of sources associating them with SIGLEC9) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Identification and molecular characterization of a novel member of the siglec family (SIGLEC9). (PubMed id 10903842)1, 2, 3 Foussias G.... Diamandis E.P. (2000)
- Siglec-9, a novel sialic acid binding member of the immunoglobulin superfamily expressed broadly on human blood leukocytes. (PubMed id 10801862)1, 2, 9 Zhang J.Q.... Crocker P.R. (2000)
- The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)1, 2 Grimwood J.... Lucas S.M. (2004)
- The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
- Cloning, characterization, and phylogenetic analysis of siglec-9, a new member of the CD33-related group of siglecs. Evidence for co- evolution with sialic acid synthesis pathways. (PubMed id 10801860)1, 2 Angata T. and Varki A. (2000)
- A novel function of Siglec-9 A391C polymorphism on T cell receptor signaling. (PubMed id 20733319)1 Cheong K.A....Lee A.Y. (2011)
- Siglec-9 is a novel leukocyte ligand for vascular adh esion protein-1 and can be used in PET imaging of inflammation and cancer. (PubMed id 21821708)1 Aalto K....Jalkanen S. (2011)
- New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)1 Davila S....Seielstad M. (2010)
- Identification of Siglec-9 as the receptor for MUC16 on human NK cells, B cells, and monocytes. (PubMed id 20497550)1 Belisle J.A....Patankar M.S. (2010)
- Immunomodulation of monocyte-derived dendritic cells through ligation of tumor-produced mucins to Siglec-9. (PubMed id 20971061)1 Ohta M....Nakada H. (2010)
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External Searches for SIGLEC9 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing SIGLEC9 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing SIGLEC9 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SIGLEC9 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for SIGLEC9 | Pharmacogenomics, SNPs, Pathways | | ATLAS Chromosomes in Cancer entry for SIGLEC9 | Genetics and Cytogenetics in Oncology and Haematology | | Functional Glycomics Gateway - Glycan Binding | http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Itlect_275 |
|
| | |
About This Section
| Patent Information for SIGLEC9 gene:
Search GeneIP for patents involving SIGLEC9
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for SIGLEC9 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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variant library, vector shuttling | | | OriGene Custom Antibody Services for SIGLEC9 | | OriGene Custom Protein Services for SIGLEC9 | | | OriGene Custom Immunoassay Development | | |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SIGLEC9 |
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