SIGLEC17P Gene
pseudogene GIFtS: 28
GCID: GC19P051671
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sialic acid binding Ig-like lectin 17, pseudogene(Previous names: sialic acid binding Ig-like lectin, pseudogene 3 )
(Previous symbol: SIGLECP3)
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Aliases
for SIGLEC17P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| Sialic Acid Binding Ig-Like Lectin 17, Pseudogene1 2 | | SIGLECP31 2 | | Sialic Acid Binding Ig-Like Lectin, Pseudogene 31 | | HSPC0782 | | SIGLECP22 |
| External Ids: | HGNC: 156041 | Entrez Gene: 2843672 | Ensembl: ENSG000001711017 | UniProtKB: B4DW224 | | ORGUL members: | |
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| NONCODE:n405637 | |
Export aliases for SIGLEC17P gene to outside databases
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Summaries
for SIGLEC17P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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-- |
Genomic Views
for SIGLEC17P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000019.9 NC_018930.1 NT_011109.16
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for SIGLEC17P
Other transcription factors
Search SABiosciences Chromatin IP Primers for SIGLEC17P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SIGLEC17P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19q13.3 Ensembl cytogenetic band: 19q13.41 HGNC cytogenetic band: 19q13.41SIGLEC17P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19P051671: view genomic region
(about GC identifiers)
Start:
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51,670,585 bp from pter |
End:
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51,676,780 bp from pter |
Size:
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6,196 bases |
Orientation:
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plus strand |
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Proteins
for SIGLEC17P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB/TrEMBL: B4DW22 (See
protein sequence)Recommended Name: cDNA FLJ56974, moderately similar to Myeloid cell surface antigen CD33 Size: 277 amino acids; 30634 Da
Secondary accessions: C4AMA5SIGLEC17P Protein expression data from MOPED and PaxDb: About this image 
ENSEMBL proteins: ENSP00000303760 ENSP00000341295
Human Recombinant Protein Products:
SIGLEC17P Antibody Products:
Assay Products for SIGLEC17P: |
Protein
Domains /
Families
for SIGLEC17P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
SIGLEC17P for domains About GeneDecksing
5 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry B4DW22ProtoNet protein and cluster: B4DW22 |
Function
for SIGLEC17P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SIGLEC17P |
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Pathways & Interactions
for SIGLEC17P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SIGLEC17P
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Drugs & Compounds
for SIGLEC17P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for SIGLEC17P
Search CenterWatch for drugs/clinical trials and news about SIGLEC17P 
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Transcripts
for SIGLEC17P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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Unigene Cluster for SIGLEC17P: Sialic acid binding Ig-like lectin 17, pseudogene Hs.132045 [show with all ESTs]Unigene Representative Sequence: NR_0475292 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000305812 ENST00000341811(uc010ycu.2 uc010ycv.2 uc002pvy.4 uc002pvz.4)
Additional cDNA sequence: AF161341.1 AK301336.1 BC041072.1 BC050999.1 NR_047529.1 NR_047530.1 NR_047531.1 2 DOTS entries: DT.97836697 DT.100742348 12 AceView cDNA sequences: BC035688 BM564074 BM920861 AF161341 AI801574 BM564076 AF150143 BQ072659 BC041072 AI040646 BC050999 AV742547
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for SIGLEC17P About this scheme
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b |
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| SP1: | | | | | | | | | | | - | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | - | | | | - | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for SIGLEC17P
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Expression
for SIGLEC17P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --
See SIGLEC17P Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SIGLEC17P
SOURCE GeneReport for Unigene cluster: Hs.132045
SABiosciences Custom PCR Arrays for SIGLEC17P
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SIGLEC17P
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat SIGLEC17P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SIGLEC17P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SIGLEC17P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SIGLEC17P |
Orthologs
for SIGLEC17P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for SIGLEC17P (if available)
TreeFam Gene Tree for SIGLEC17P (if available) |
Paralogs
for SIGLEC17P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for SIGLEC17P gene
- CD332 SIGLEC82 SIGLEC52 SIGLEC162 SIGLEC112 SIGLEC62 SIGLEC142 SIGLEC122
- MAG2 SIGLEC102 SIGLEC72 SIGLEC92
SIGLEC17P for paralogs About GeneDecksing
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Genomic Variants
for SIGLEC17P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 19 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for SIGLEC17P (51670585 - 51676780 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for SIGLEC17P: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for SIGLEC17P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for SIGLEC17P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for SIGLEC17P gene integrated from 9 sources:
(articles sorted by number of sources associating them with SIGLEC17P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Specific inactivation of two immunomodulatory SIGLEC g enes during human evolution. (PubMed id 22665810)1 Wang X....Varki A. (2012)
- Genomic organization of the siglec gene locus on chromosome 19q13.4 and cloning of two new siglec pseudogenes. (PubMed id 11943481)1 Yousef G.M.... Diamandis E.P. (2002)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- A second uniquely human mutation affecting sialic acid biology. (PubMed id 11546777)1 Angata T.... Varki A. (2001)
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External Searches for SIGLEC17P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing SIGLEC17P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing SIGLEC17P gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SIGLEC17P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for SIGLEC17P | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for SIGLEC17P gene:
Search GeneIP for patents involving SIGLEC17P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for SIGLEC17P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SIGLEC17P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SIGLEC17P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SIGLEC17P | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SIGLEC17P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SIGLEC17P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SIGLEC17P |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SIGLEC17P |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat SIGLEC17P |
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