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Aliases for SIGLEC17P Gene

Aliases for SIGLEC17P Gene

  • Sialic Acid Binding Ig Like Lectin 17, Pseudogene 2 3 5
  • Sialic Acid Binding Ig-Like Lectin, Pseudogene 3 2 3
  • Sialic Acid Binding Ig-Like Lectin 17, Pseudogene 2
  • Silec Pseudogene-2 3
  • SIGLECP2 3
  • SIGLECP3 3
  • HSPC078 3

External Ids for SIGLEC17P Gene

Previous HGNC Symbols for SIGLEC17P Gene

  • SIGLECP3

Previous GeneCards Identifiers for SIGLEC17P Gene

  • GC19P051671

Summaries for SIGLEC17P Gene

GeneCards Summary for SIGLEC17P Gene

SIGLEC17P (Sialic Acid Binding Ig Like Lectin 17, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SIGLEC17P Gene

Genomics for SIGLEC17P Gene

Regulatory Elements for SIGLEC17P Gene

Enhancers for SIGLEC17P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G051136 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12 -26.6 -26628 9.4 TBP PKNOX1 NFRKB YY1 ZNF766 BCLAF1 KDM4B SMAD5 ZBTB11 CEBPB SIGLEC17P CTU1 POLD1 SIGLEC9 ZNF616 KLK14 KLK10 SIGLEC7 SIGLEC10 CD33
GH19G051687 1.8 FANTOM5 ENCODE dbSUPER 10.5 +523.2 523163 6.9 CREB3L1 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC MEF2D ZNF610 ZNF808 ZNF836 ZNF616 ZNF841 ZNF137P ENSG00000268970 ZNF766 ENSG00000269825 ZNF528 ZNF175
GH19G050488 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -676.8 -676816 4.6 HDAC1 PKNOX1 CBX3 KLF17 NFXL1 ZNF48 YY1 EGR1 ZNF366 HSF1 SNORD35A RPS11 SNORD35B POLD1 PTOV1-AS2 PRR12 PNKP NUP62 SIGLEC17P ASPDH
GH19G052137 1.4 FANTOM5 ENCODE 10.5 +972.3 972304 3.3 PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF808 ZNF137P ENSG00000268970 ZNF816 ZNF350 ZNF836 ZNF600 ZNF468 ZNF616 ZNF841
GH19G050649 1.3 Ensembl ENCODE 10.5 -517.5 -517491 0.9 HDGF ATF1 CREB3L1 ARNT YBX1 GLI4 ETS1 ZNF766 ZNF416 ZNF143 ZNF175 POLD1 LRRC4B PTOV1-AS2 PNKP BCL2L12 NUP62 SIGLEC17P ENSG00000268231 ETFB
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SIGLEC17P on UCSC Golden Path with GeneCards custom track

Genomic Location for SIGLEC17P Gene

Chromosome:
19
Start:
51,167,328 bp from pter
End:
51,173,524 bp from pter
Size:
6,197 bases
Orientation:
Plus strand

Genomic View for SIGLEC17P Gene

Genes around SIGLEC17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SIGLEC17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SIGLEC17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIGLEC17P Gene

Proteins for SIGLEC17P Gene

Post-translational modifications for SIGLEC17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SIGLEC17P Gene

Domains & Families for SIGLEC17P Gene

Gene Families for SIGLEC17P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SIGLEC17P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SIGLEC17P Gene

Function for SIGLEC17P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SIGLEC17P Gene

Localization for SIGLEC17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SIGLEC17P Gene

Pathways & Interactions for SIGLEC17P Gene

SuperPathways for SIGLEC17P Gene

No Data Available

Interacting Proteins for SIGLEC17P Gene

Gene Ontology (GO) - Biological Process for SIGLEC17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SIGLEC17P Gene

Transcripts for SIGLEC17P Gene

mRNA/cDNA for SIGLEC17P Gene

(7) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SIGLEC17P Gene

Sialic acid binding Ig-like lectin 17, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SIGLEC17P Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b
SP1: -
SP2: - -
SP3:

Relevant External Links for SIGLEC17P Gene

GeneLoc Exon Structure for
SIGLEC17P
ECgene alternative splicing isoforms for
SIGLEC17P

Expression for SIGLEC17P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SIGLEC17P Gene

mRNA differential expression in normal tissues according to GTEx for SIGLEC17P Gene

This gene is overexpressed in Whole Blood (x7.5) and Spleen (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of SIGLEC17P Gene:

SIGLEC17P

SOURCE GeneReport for Unigene cluster for SIGLEC17P Gene:

Hs.132045
genes like me logo Genes that share expression patterns with SIGLEC17P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SIGLEC17P Gene

Orthologs for SIGLEC17P Gene

Evolution for SIGLEC17P Gene

ENSEMBL:
Gene Tree for SIGLEC17P (if available)
TreeFam:
Gene Tree for SIGLEC17P (if available)

No data available for Orthologs for SIGLEC17P Gene

Paralogs for SIGLEC17P Gene

No data available for Paralogs for SIGLEC17P Gene

Variants for SIGLEC17P Gene

Sequence variations from dbSNP and Humsavar for SIGLEC17P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000405601 -- 51,173,973(+) ACGGG(C/G)AAGGC intron-variant
rs1000956297 -- 51,173,142(+) TCTCC(C/T)TGCAT intron-variant, nc-transcript-variant
rs1001378841 -- 51,168,937(+) CTACC(A/G)TCAGG intron-variant
rs1002791899 -- 51,170,249(+) AGAAA(A/C)AAAGG intron-variant
rs1003194990 -- 51,166,080(+) ACTAC(A/G)GGTGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SIGLEC17P Gene

Variant ID Type Subtype PubMed ID
esv3574598 CNV gain 25503493
nsv1140251 OTHER inversion 24896259

Relevant External Links for SIGLEC17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SIGLEC17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SIGLEC17P Gene

Disorders for SIGLEC17P Gene

Relevant External Links for SIGLEC17P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SIGLEC17P

No disorders were found for SIGLEC17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SIGLEC17P Gene

Publications for SIGLEC17P Gene

  1. Specific inactivation of two immunomodulatory SIGLEC genes during human evolution. (PMID: 22665810) Wang X. … Varki A. (Proc. Natl. Acad. Sci. U.S.A. 2012) 3 64
  2. Genomic organization of the siglec gene locus on chromosome 19q13.4 and cloning of two new siglec pseudogenes. (PMID: 11943481) Yousef G.M. … Diamandis E.P. (Gene 2002) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. A second uniquely human mutation affecting sialic acid biology. (PMID: 11546777) Angata T. … Varki A. (J. Biol. Chem. 2001) 3 64

Products for SIGLEC17P Gene

Sources for SIGLEC17P Gene

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