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Aliases & Descriptions for SIGIRR
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases MGC110992 2 TIR8 1 , 2 , 3
Descriptions Single Ig IL-1R-related molecule 2 , 3 Single immunoglobulin domain-containing IL1R-related protein 3 Toll/interleukin-1 receptor 8 3 single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 2 single immunoglobulin and toll-interleukin 1 receptor domain 1 single immunoglobulin domain IL1R1 related 2
Search outside databases for aliases for SIGIRR genePrevious GC identifers: GC11U990281 GC11P000782
Summaries for SIGIRR (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: SIGIR_HUMAN, Q6IA17 Function : Acts as a negative regulator of the Toll-like and IL-1R receptor signaling pathways.Attenuates the recruitment of receptor-proximal signaling components to the TLR4 receptor,probably through an TIR-TIR domain interaction with TLR4. Through its extracellular domaininterferes with the heterodimerization of Il1R1 and IL1RAP
Gene Wiki entry for SIGIRR
Genomic Location for SIGIRR
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SIGIRR gene Entrez Gene cytogenetic band: 11p15.5 Ensembl cytogenetic band: 11p15.5 HGNC cytogenetic band: 11p15.5 SIGIRR Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M000395:
(about GC identifiers )
Start:
395,716 bp from pter
End:
407,397 bp from pter
Size:
11,682 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000011.8 NT_035113.6 Proteins for SIGIRR
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SIGIR_HUMAN, Q6IA17 (See
protein sequence )Recommended Name: Single Ig IL-1-related receptor Size : 410 amino acids; 45707 Da
Subunit : Interacts with IL1R1, IRAK1, TLR4, TLR5, TLR9 and TRAF6. Upon IL-1 stimulation found in acomplex at least composed of IL1R1, SIGIRR, MYD88, IRAK1 and TRAF6. Upon stimulation with LPCfound in a complex at least composed of TLR4, SIG1IR, MYD88, IRAK1 and TRAF6
Subcellular location : Membrane; Single-pass type III membrane protein (Potential)
Secondary accessions : Q3KQY2 Q6UXI3 Q9H733Alternative splicing : 2 isoforms : Q6IA17-1 Q6IA17-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001128525.1 NP_001128526.1 NP_068577.2 ENSEMBL proteins: ENSP00000371960 ENSP00000380756 ENSP00000333656 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for SIGIRR: Assays for SIGIRR:
Protein
Domains/ Families for SIGIRR(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q6IA17 ProtoNet protein and cluster: Q6IA17
UniProtKB/Swiss-Prot: SIGIR_HUMAN, Q6IA17 Similarity : Belongs to the interleukin-1 receptor familySimilarity : Contains 1 Ig-like C2-type (immunoglobulin-like) domainSimilarity : Contains 1 TIR domain
Gene Function for SIGIRR
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_021805 Applied Biosystems Silencer ® siRNAs for SIGIRR Sigma-Aldrich siRNA and siRNA Panels for SIGIRR Sigma-Aldrich shRNA for SIGIRR Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135053                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135053                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001135053  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_021805 UniProtKB/Swiss-Prot: SIGIR_HUMAN, Q6IA17 Function : Acts as a negative regulator of the Toll-like and IL-1R receptor signaling pathways.Attenuates the recruitment of receptor-proximal signaling components to the TLR4 receptor,probably through an TIR-TIR domain interaction with TLR4. Through its extracellular domaininterferes with the heterodimerization of Il1R1 and IL1RAP
2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Sigirr) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for SIGIRR
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for SIGIRR 5/12 Interacting proteins for SIGIRR (ENSP00000371960 3 Q6IA17 2 ) via UniProtKB, MINT, and/or STRING (see all 12
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
GO ID Qualified GO term Evidence PubMed IDs GO:0001960 negative regulation of cytokine-mediated signaling pathway
ISS -- GO:0006953 acute-phase response
ISS -- GO:0007165 signal transduction
IEA -- GO:0031665 negative regulation of lipopolysaccharide-mediated signaling pathway
TAS 15866876 GO:0043433 negative regulation of transcription factor activity
IMP 12925853
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Drugs & Compounds for SIGIRR (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SIGIRR
Transcripts for SIGIRR(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_021805 Sigma-Aldrich siRNA and siRNA Panels for SIGIRR Sigma-Aldrich shRNA for SIGIRR Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001135053 NM_001135054 NM_021805
REFSEQ mRNAs for SIGIRR gene (3 alternative transcripts): NM_001135053.1 NM_001135054.1 NM_021805.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001135053 NM_001135054 NM_021805
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135053                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135053                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001135053  
Additional cDNA sequence: AK025099.1 AK093427.1 AK172830.1 AY358342.1 BC003591.1 BC025953.1 BC106007.1 CR457338.1
14 DOTS entries : DT.100804117 DT.97804929 DT.442024 DT.92425515 DT.100036286 DT.75102267 DT.92425513 DT.100804122 DT.92425514 DT.95300049 DT.120685279 DT.95118220 DT.100804120 DT.97775871
24/154 AceView cDNA sequences (see all 154
):AI741422 AA513675 CB243174 BE869865 CD722327 CN485211 BQ232590 BI769076 N36317 BI517905 AW272801 BX400206 BQ575655 BX382402 CF146731 AA582049 CB243183 AA679554 AK172830 AI052311 BE907720 CB305832 BM924346 BX341382
highest scoring ESTs for SIGIRR :AA085764 AI961068 AK025099 AK093427 AK172830 BC025953 BM924346 BQ073096 CB137003 CB138796
Unigene Cluster for SIGIRR: Single immunoglobulin and toll-interleukin 1 receptor (TIR) domain Hs.501624 [show with all ESTs ] Unigene Representative Sequence: AK093427 GeneLoc Exon Structure 5/21 Alternative Splicing Database (ASD) splice patterns (SP) for SIGIRR (see all 21
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c · 4d · 4e ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c ^ 13 ^ SP1 :     -   -   -   -   -         -   -   -   -                           SP2 :       -   -   -   -         -   -   -   -                           SP3 :                     -   -   -   -                           SP4 :                     -   -   -   -                           SP5 :       -   -   -   -         -   -   -   -   -   -         -              
ExUns: 14a · 14b · 14c · 14d ^ 15a · 15b SP1 :       -       SP2 :       -       SP3 :       -       SP4 :             SP5 :       -      
About this scheme ECgene alternative splicing isoforms for SIGIRR 3 Ensembl transcripts including schematic representations : ENST00000382520
ENST00000397632
ENST00000332725
Expression for SIGIRR
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SIGIRR expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SIGIRR 1 / 2 / 3
7 probe-sets matching SIGIRR gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTGATTCTTCSOURCE GeneReport for Unigene cluster: Hs.501624 UniProtKB/Swiss-Prot: SIGIR_HUMAN, Q6IA17 Tissue specificity : Mainly expressed in epithelial tissues such as kidney, lung and gut
Orthologs for SIGIRR
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SIGIRR gene from 5/6 species (see all 6
)
About this table Species with no ortholog for SIGIRR ENSEMBL Gene Tree for SIGIRR Paralogs for SIGIRR (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SIGIRR gene IL1RAP 2 IL1RL1 2
SNPs/Variants for SIGIRR (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SIGIRR (up to first 250kb)
Disorders & Mutations for SIGIRR
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605478 2 Novoseek disease relationships for SIGIRR gene
About this table Human Genome Epidemiology Navigator: SIGIRR (2 documents)
Medical News for SIGIRR (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SIGIRR (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/15 PubMed articles for SIGIRR gene (see all 15
): Identification and characterization of SIGIRR, a molecule representing a novel subtype of the IL-1R superfamily. (PubMed id 10346978) 1, 2, 3, 4 Thomassen E.... Sims J.E. (1999) Unique pattern of expression and inhibition of IL-1 signaling by the IL-1 receptor family member TIR8/SIGIRR. (PubMed id 14715412) 1, 3, 4 Polentarutti N....Mantovani A. (2003) SIGIRR inhibits interleukin-1 receptor- and toll-like receptor 4- mediated signaling through different mechanisms. (PubMed id 15866876) 1, 3, 4 Qin J.... Li X. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) SIGIRR, a negative regulator of Toll-like receptor-interleukin 1 receptor signaling. (PubMed id 12925853) 3, 4 Wald D.... Li X. (2003) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 3, 4 Clark H.F....Gray A. (2003) Gene polymorphisms of Toll-like and related recognition receptors in relation to the vaginal carriage of Gardnerella vaginalis and Atopobium vaginae. (PubMed id 19200604) 3 Verstraelen H....Temmerman M. (2009) An association study of asthma and related phenotypes with polymorphisms in negative regulator molecules of the TLR signaling pathway. (PubMed id 16432636) 3 Nakashima K....Tamari M. (2006) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 3 Kimura K.... Sugano S. (2006)
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Genome Databases showing SIGIRR
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SIGIRR
(According to HUGE )
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--
Specialized Databases showing SIGIRR (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for SIGIRR (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for SIGIRR:
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