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Aliases for SHMT1P1 Gene

Aliases for SHMT1P1 Gene

  • Serine Hydroxymethyltransferase 1 (Soluble) Pseudogene 1 2 3 5
  • Serine Hydroxymethyltransferase 1 (Soluble) Pseudogene 2
  • SHMT1P 3

External Ids for SHMT1P1 Gene

Previous HGNC Symbols for SHMT1P1 Gene

  • SHMT1P

Previous GeneCards Identifiers for SHMT1P1 Gene

  • GC01M044317
  • GC01M042435

Summaries for SHMT1P1 Gene

GeneCards Summary for SHMT1P1 Gene

SHMT1P1 (Serine Hydroxymethyltransferase 1 (Soluble) Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHMT1P1 Gene

Genomics for SHMT1P1 Gene

Regulatory Elements for SHMT1P1 Gene

Enhancers for SHMT1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G043853 1.4 Ensembl ENCODE dbSUPER 0.7 -1.6 -1600 0.9 NFIB ZNF133 ZNF2 GATA2 ZNF366 ZSCAN5C ZNF391 EGR2 ZNF362 OVOL3 ARTN IPO13 DPH2 LOC101929609 KDM4A-AS1 ST3GAL3 SHMT1P1 GC01M043853
GH01G043847 0.9 Ensembl dbSUPER 0.7 +4.4 4402 0.5 ZNF146 NR2F1 HLF EP300 JUND POLR2A SMARCA4 NR2C1 ARTN ST3GAL3 SHMT1P1 MIR6079
GH01G043843 0.6 ENCODE 0.4 +7.5 7536 1.0 CTCF CEBPG RAD21 ZNF316 ATF3 NR2C1 HNF4A ZBTB33 NR2F6 MAFK ARTN MIR6079 SHMT1P1
GH01G043838 0.4 dbSUPER 0.4 +12.8 12802 2.0 HNF4A EBF1 ARTN IPO13 LOC101929609 ST3GAL3 LOC101929592 MIR6079 SHMT1P1
GH01G043841 0.4 ENCODE 0.4 +10.2 10189 1.5 ZNF707 ARTN LOC101929609 IPO13 LOC101929592 ST3GAL3 KDM4A-AS1 MIR6079 SHMT1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SHMT1P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SHMT1P1 Gene

Chromosome:
1
Start:
43,849,421 bp from pter
End:
43,851,956 bp from pter
Size:
2,536 bases
Orientation:
Minus strand

Genomic View for SHMT1P1 Gene

Genes around SHMT1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHMT1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHMT1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHMT1P1 Gene

Proteins for SHMT1P1 Gene

Post-translational modifications for SHMT1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHMT1P1 Gene

Domains & Families for SHMT1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SHMT1P1 Gene

Function for SHMT1P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHMT1P1 Gene

Localization for SHMT1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SHMT1P1 Gene

Pathways & Interactions for SHMT1P1 Gene

SuperPathways for SHMT1P1 Gene

No Data Available

Interacting Proteins for SHMT1P1 Gene

Gene Ontology (GO) - Biological Process for SHMT1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SHMT1P1 Gene

Drugs & Compounds for SHMT1P1 Gene

No Compound Related Data Available

Transcripts for SHMT1P1 Gene

mRNA/cDNA for SHMT1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SHMT1P1 Gene

No ASD Table

Relevant External Links for SHMT1P1 Gene

GeneLoc Exon Structure for
SHMT1P1
ECgene alternative splicing isoforms for
SHMT1P1

Expression for SHMT1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SHMT1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SHMT1P1 Gene:

SHMT1P1
genes like me logo Genes that share expression patterns with SHMT1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHMT1P1 Gene

Orthologs for SHMT1P1 Gene

Evolution for SHMT1P1 Gene

ENSEMBL:
Gene Tree for SHMT1P1 (if available)
TreeFam:
Gene Tree for SHMT1P1 (if available)

No data available for Orthologs for SHMT1P1 Gene

Paralogs for SHMT1P1 Gene

No data available for Paralogs for SHMT1P1 Gene

Variants for SHMT1P1 Gene

Relevant External Links for SHMT1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHMT1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SHMT1P1 Gene

Disorders for SHMT1P1 Gene

No disorders were found for SHMT1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SHMT1P1 Gene

Publications for SHMT1P1 Gene

  1. Characterisation of a human serine hydroxymethyltransferase pseudogene and its localisation to 1p32.3-33. (PMID: 8786078) Byrne P.C. … Snell K. (Hum. Genet. 1996) 2 3 64
  2. Nucleotide sequence, chromosome localization, and evolutionary conservation of a serine hydroxymethyltransferase-processed pseudogene. (PMID: 9156323) Devor E.J. … Dill-Devor R.M. (Hum. Hered. 1997) 3 64

Products for SHMT1P1 Gene

Sources for SHMT1P1 Gene

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