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Aliases for SHKBP1 Gene

Aliases for SHKBP1 Gene

  • SH3KBP1 Binding Protein 1 2 3
  • PP203 3
  • Sb1 3

External Ids for SHKBP1 Gene

Previous GeneCards Identifiers for SHKBP1 Gene

  • GC19P045777
  • GC19P041082
  • GC19P037517

Summaries for SHKBP1 Gene

GeneCards Summary for SHKBP1 Gene

SHKBP1 (SH3KBP1 Binding Protein 1) is a Protein Coding gene. An important paralog of this gene is KCTD3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHKBP1 Gene

Genomics for SHKBP1 Gene

Regulatory Elements for SHKBP1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SHKBP1 Gene

Chromosome:
19
Start:
40,576,851 bp from pter
End:
40,591,399 bp from pter
Size:
14,549 bases
Orientation:
Plus strand

Genomic View for SHKBP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SHKBP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHKBP1 Gene

Proteins for SHKBP1 Gene

  • Protein details for SHKBP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBC3-SHKB1_HUMAN
    Recommended name:
    SH3KBP1-binding protein 1
    Protein Accession:
    Q8TBC3
    Secondary Accessions:
    • Q8N2I6
    • Q8WY93
    • Q96IB8

    Protein attributes for SHKBP1 Gene

    Size:
    707 amino acids
    Molecular mass:
    76344 Da
    Quaternary structure:
    • Interacts with SH3KBP1.

    Three dimensional structures from OCA and Proteopedia for SHKBP1 Gene

    Alternative splice isoforms for SHKBP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SHKBP1 Gene

Proteomics data for SHKBP1 Gene at MOPED

Post-translational modifications for SHKBP1 Gene

  • Ubiquitination at Lys 28, Lys 181, Lys 359, and Lys 512
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for SHKBP1 Gene

Domains & Families for SHKBP1 Gene

Gene Families for SHKBP1 Gene

Protein Domains for SHKBP1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TBC3

UniProtKB/Swiss-Prot:

SHKB1_HUMAN :
  • Contains 1 BTB (POZ) domain.
  • Belongs to the KCTD3 family.
  • Contains 8 WD repeats.
Domain:
  • Contains 1 BTB (POZ) domain.
Family:
  • Belongs to the KCTD3 family.
Similarity:
  • Contains 8 WD repeats.
genes like me logo Genes that share domains with SHKBP1: view

Function for SHKBP1 Gene

Gene Ontology (GO) - Molecular Function for SHKBP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SHKBP1: view
genes like me logo Genes that share phenotypes with SHKBP1: view

Animal Model Products

miRNA for SHKBP1 Gene

miRTarBase miRNAs that target SHKBP1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SHKBP1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for SHKBP1 Gene

Localization for SHKBP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SHKBP1 Gene

Pathways & Interactions for SHKBP1 Gene

SuperPathways for SHKBP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SHKBP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0051260 protein homooligomerization IEA --
genes like me logo Genes that share ontologies with SHKBP1: view

No data available for Pathways by source and SIGNOR curated interactions for SHKBP1 Gene

Drugs & Compounds for SHKBP1 Gene

No Compound Related Data Available

Transcripts for SHKBP1 Gene

Unigene Clusters for SHKBP1 Gene

SH3KBP1 binding protein 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SHKBP1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SHKBP1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^
SP1: - - - - -
SP2: - - - - - - -
SP3: - - - -
SP4: - - - -
SP5: - - - -
SP6: - - - -
SP7: - - - - - - - - - - -
SP8:
SP9:
SP10:
SP11: - -
SP12: - - - -
SP13:
SP14:
SP15:
SP16: - - - - -
SP17:

ExUns: 13 ^ 14 ^ 15a · 15b · 15c · 15d ^ 16a · 16b ^ 17 ^ 18 ^ 19a · 19b ^ 20a · 20b · 20c
SP1: - -
SP2: - -
SP3: - -
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10: -
SP11:
SP12:
SP13: - - - - -
SP14: -
SP15: -
SP16:
SP17:

Relevant External Links for SHKBP1 Gene

GeneLoc Exon Structure for
SHKBP1
ECgene alternative splicing isoforms for
SHKBP1

Expression for SHKBP1 Gene

mRNA expression in normal human tissues for SHKBP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SHKBP1 Gene

This gene is overexpressed in Whole Blood (x22.7).

Protein differential expression in normal tissues from HIPED for SHKBP1 Gene

This gene is overexpressed in Breast (58.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SHKBP1 Gene



SOURCE GeneReport for Unigene cluster for SHKBP1 Gene Hs.26506

genes like me logo Genes that share expression patterns with SHKBP1: view

Protein tissue co-expression partners for SHKBP1 Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SHKBP1 Gene

Orthologs for SHKBP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for SHKBP1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SHKBP1 35
  • 90.53 (n)
  • 95.74 (a)
SHKBP1 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SHKBP1 35
  • 90.6 (n)
  • 95.58 (a)
SHKBP1 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Shkbp1 35
  • 85.8 (n)
  • 93.18 (a)
Shkbp1 16
Shkbp1 36
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SHKBP1 35
  • 99.22 (n)
  • 99.56 (a)
SHKBP1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Shkbp1 35
  • 85.32 (n)
  • 92.33 (a)
oppossum
(Monodelphis domestica)
Mammalia SHKBP1 36
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SHKBP1 36
  • 54 (a)
OneToOne
chicken
(Gallus gallus)
Aves SHKBP1 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SHKBP1 36
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100486587 35
  • 68.6 (n)
  • 75.27 (a)
zebrafish
(Danio rerio)
Actinopterygii shkbp1 35
  • 69.43 (n)
  • 74.85 (a)
SHKBP1 36
  • 55 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG9467 36
  • 46 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea T23B12.6 36
  • 44 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 58 (a)
OneToMany
Species with no ortholog for SHKBP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SHKBP1 Gene

ENSEMBL:
Gene Tree for SHKBP1 (if available)
TreeFam:
Gene Tree for SHKBP1 (if available)

Paralogs for SHKBP1 Gene

Paralogs for SHKBP1 Gene

genes like me logo Genes that share paralogs with SHKBP1: view

Variants for SHKBP1 Gene

Sequence variations from dbSNP and Humsavar for SHKBP1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs366973 -- 40,585,175(+) gatgt(C/G)agttc intron-variant
rs372038 -- 40,582,095(-) aaaaa(C/T)ataaa intron-variant
rs392726 -- 40,589,912(-) CCCCC(A/G)TGCAG intron-variant
rs393569 -- 40,588,932(-) GGTTG(C/T)GGCAG intron-variant
rs394115 -- 40,581,851(+) CAGAC(C/T)GTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SHKBP1 Gene

Variant ID Type Subtype PubMed ID
dgv3869n71 CNV Loss 21882294
dgv3870n71 CNV Loss 21882294
nsv911718 CNV Loss 21882294
dgv3871n71 CNV Loss 21882294
nsv911724 CNV Loss 21882294
nsv911725 CNV Loss 21882294
nsv911726 CNV Loss 21882294
esv2718566 CNV Deletion 23290073

Variation tolerance for SHKBP1 Gene

Residual Variation Intolerance Score: 31.27% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.31; 41.19% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SHKBP1 Gene

HapMap Linkage Disequilibrium report
SHKBP1
Human Gene Mutation Database (HGMD)
SHKBP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SHKBP1 Gene

Disorders for SHKBP1 Gene

Relevant External Links for SHKBP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SHKBP1
genes like me logo Genes that share disorders with SHKBP1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHKBP1 Gene

Publications for SHKBP1 Gene

  1. SETA is a multifunctional adapter protein with three SH3 domains that binds Grb2, Cbl, and the novel SB1 proteins. (PMID: 11152963) Borinstein S.C. … Bogler O. (Cell. Signal. 2000) 2 67
  2. Genetic variant in the BCL11A (rs1427407), but not HBS1-MYB (rs6934903) loci associate with fetal hemoglobin levels in Indian sickle cell disease patients. (PMID: 25457385) Bhanushali A.A. … Das B.R. (Blood Cells Mol. Dis. 2015) 67
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  4. Luzp4 defines a new mRNA export pathway in cancer cells. (PMID: 25662211) Viphakone N. … Wilson S.A. (Nucleic Acids Res. 2015) 67
  5. Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions. (PMID: 24255178) Couzens A.L. … Gingras A.C. (Sci Signal 2013) 67

Products for SHKBP1 Gene

Sources for SHKBP1 Gene

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