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Aliases for SHISA8 Gene

Aliases for SHISA8 Gene

  • Shisa Family Member 8 2 3 5
  • C22orf17 3 4
  • Chromosome 22 Open Reading Frame 17 2
  • Shisa Homolog 8 (Xenopus Laevis) 2
  • Shisa Homolog 8 3
  • CTA-250D10.17 3
  • Orf26 3

External Ids for SHISA8 Gene

Previous HGNC Symbols for SHISA8 Gene

  • C22orf17

Previous GeneCards Identifiers for SHISA8 Gene

  • GC22M040636
  • GC22M042305

Summaries for SHISA8 Gene

GeneCards Summary for SHISA8 Gene

SHISA8 (Shisa Family Member 8) is a Protein Coding gene. An important paralog of this gene is SHISA6.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHISA8 Gene

Genomics for SHISA8 Gene

Regulatory Elements for SHISA8 Gene

Enhancers for SHISA8 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SHISA8 on UCSC Golden Path with GeneCards custom track

Genomic Location for SHISA8 Gene

Chromosome:
22
Start:
41,909,533 bp from pter
End:
41,915,093 bp from pter
Size:
5,561 bases
Orientation:
Minus strand

Genomic View for SHISA8 Gene

Genes around SHISA8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHISA8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHISA8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHISA8 Gene

Proteins for SHISA8 Gene

  • Protein details for SHISA8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B8ZZ34-SHSA8_HUMAN
    Recommended name:
    Putative protein shisa-8
    Protein Accession:
    B8ZZ34

    Protein attributes for SHISA8 Gene

    Size:
    492 amino acids
    Molecular mass:
    51412 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAX14868.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAX14868.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for SHISA8 Gene

Proteomics data for SHISA8 Gene at MOPED

Post-translational modifications for SHISA8 Gene

  • Glycosylation at Asn 75
  • Modification sites at PhosphoSitePlus

Other Protein References for SHISA8 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SHISA8 Gene

Domains & Families for SHISA8 Gene

Gene Families for SHISA8 Gene

Protein Domains for SHISA8 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SHISA8 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

B8ZZ34

UniProtKB/Swiss-Prot:

SHSA8_HUMAN :
  • Belongs to the shisa family.
Family:
  • Belongs to the shisa family.
genes like me logo Genes that share domains with SHISA8: view

Function for SHISA8 Gene

Phenotypes for SHISA8 Gene

genes like me logo Genes that share phenotypes with SHISA8: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHISA8 Gene

Localization for SHISA8 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SHISA8 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SHISA8 Gene COMPARTMENTS Subcellular localization image for SHISA8 gene
Compartment Confidence
plasma membrane 4
cytosol 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for SHISA8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0045202 synapse IBA --
genes like me logo Genes that share ontologies with SHISA8: view

Pathways & Interactions for SHISA8 Gene

SuperPathways for SHISA8 Gene

No Data Available

Interacting Proteins for SHISA8 Gene

Gene Ontology (GO) - Biological Process for SHISA8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SHISA8 Gene

Drugs & Compounds for SHISA8 Gene

No Compound Related Data Available

Transcripts for SHISA8 Gene

mRNA/cDNA for SHISA8 Gene

(4) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SHISA8 Gene

Shisa homolog 8 (Xenopus laevis):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SHISA8 Gene

No ASD Table

Relevant External Links for SHISA8 Gene

GeneLoc Exon Structure for
SHISA8
ECgene alternative splicing isoforms for
SHISA8

Expression for SHISA8 Gene

mRNA expression in normal human tissues for SHISA8 Gene

mRNA differential expression in normal tissues according to GTEx for SHISA8 Gene

This gene is overexpressed in Brain - Cerebellum (x18.5), Brain - Cerebellar Hemisphere (x18.3), and Adrenal Gland (x5.0).

Protein differential expression in normal tissues from HIPED for SHISA8 Gene

This gene is overexpressed in Heart (40.4) and Brain (28.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SHISA8 Gene



SOURCE GeneReport for Unigene cluster for SHISA8 Gene Hs.526704

genes like me logo Genes that share expression patterns with SHISA8: view

Protein tissue co-expression partners for SHISA8 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SHISA8 Gene

Orthologs for SHISA8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SHISA8 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia SHISA8 35
  • 85.8 (n)
  • 81.16 (a)
mouse
(Mus musculus)
Mammalia AI848285 35
  • 79.49 (n)
  • 79.24 (a)
Shisa8 16
chimpanzee
(Pan troglodytes)
Mammalia SHISA8 35
  • 95.87 (n)
  • 96.51 (a)
SHISA8 36
  • 92 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Shisa8 35
  • 79.58 (n)
  • 79.49 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia SHISA8 36
  • 55 (a)
OneToOne
chicken
(Gallus gallus)
Aves SHISA8 35
  • 67.74 (n)
  • 61.29 (a)
lizard
(Anolis carolinensis)
Reptilia SHISA8 36
  • 22 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100489046 35
  • 50.66 (n)
  • 45.57 (a)
zebrafish
(Danio rerio)
Actinopterygii SHISA8 (1 of 2) 36
  • 17 (a)
OneToMany
SHISA8 (2 of 2) 36
  • 35 (a)
OneToMany
Species with no ortholog for SHISA8:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SHISA8 Gene

ENSEMBL:
Gene Tree for SHISA8 (if available)
TreeFam:
Gene Tree for SHISA8 (if available)

Paralogs for SHISA8 Gene

Paralogs for SHISA8 Gene

(1) SIMAP similar genes for SHISA8 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SHISA8: view

Variants for SHISA8 Gene

Sequence variations from dbSNP and Humsavar for SHISA8 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs7292594 -- 41,913,568(+) CCTTT(C/G)TACGC intron-variant
rs34098813 -- 41,916,930(+) AAAAA(-/A)CAAAA upstream-variant-2KB
rs34149338 -- 41,910,928(+) ACCCA(-/G)GGGGG intron-variant
rs77288416 -- 41,913,545(+) CACAC(A/G)ACTGT intron-variant
rs35311359 -- 41,912,988(+) ATCAT(-/G)GGGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SHISA8 Gene

Variant ID Type Subtype PubMed ID
nsv508736 CNV Insertion 20534489
dgv4979n71 CNV Loss 21882294
dgv4980n71 CNV Loss 21882294

Relevant External Links for SHISA8 Gene

HapMap Linkage Disequilibrium report
SHISA8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SHISA8 Gene

Disorders for SHISA8 Gene

Relevant External Links for SHISA8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SHISA8

No disorders were found for SHISA8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHISA8 Gene

Publications for SHISA8 Gene

  1. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) (Nature 2014) 3 67

Products for SHISA8 Gene

Sources for SHISA8 Gene

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