SHISA6 Gene
protein-coding GIFtS : 43
GCID: GC17 P011144
shisa homolog 6 (Xenopus laevis)
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Aliasesfor SHISA6 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Shisa Homolog 6 (Xenopus Laevis) 1 2 FLJ454551 Protein Shisa-6 Homolog2
Export aliases for SHISA6 gene to outside databases Previous GC identifers: GC17P011086 GC17P011046
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Summariesfor SHISA6 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor SHISA6 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000017.10 NC_018928.1 NT_010718.16 Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for SHISA6 Other transcription factors Search SABiosciences Chromatin IP Primers for SHISA6 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SHISA6
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17p12 Ensembl cytogenetic band: 17p12 HGNC cytogenetic band: 17p13.1-p12 SHISA6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P011144: view genomic region
(about GC identifiers )
Start:
11,144,580 bp from pter
End:
11,467,380 bp from pter
Size:
322,801 bases
Orientation:
plus strand
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Proteinsfor SHISA6 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SHSA6_HUMAN, Q6ZSJ9 (See
protein sequence )Recommended Name: Protein shisa-6 homolog precursor Size : 500 amino acids; 55764 Da
Subcellular location : Membrane; Single-pass type I membrane protein (Potential)
Sequence caution : Sequence=BAC86949.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=BAG54617.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions : B3KXV5 Q4PL63Alternative splicing : 3 isoforms : Q6ZSJ9-1 Q6ZSJ9-2 Q6ZSJ9-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for SHISA6: NX_Q6ZSJ9 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6ZSJ9 SHISA6 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins (3 alternative transcripts):
NP_001166932.1 NP_001166933.1 NP_997269.2 ENSEMBL proteins: ENSP00000390084 ENSP00000388659 ENSP00000387157 Human Recombinant Protein Products for SHISA6: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0016021 integral to membrane
IEA --
SHISA6 for ontologies About GeneDecksing SHISA6 Antibody Products: Assay Products for SHISA6:
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Protein
Domains / Familiesfor SHISA6 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SHISA6 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q6ZSJ9 ProtoNet protein and cluster: Q6ZSJ9
UniProtKB/Swiss-Prot: SHSA6_HUMAN, Q6ZSJ9 Similarity : Belongs to the shisa family
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Functionfor SHISA6 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Phenotypes: 1 GenomeRNAi human phenotype for SHISA6 :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SHISA6 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SHISA6 (see all 4 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): SHISA6 (NM_207386 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SHISA6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SHISA6
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SHISA6
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Pathways & Interactionsfor SHISA6 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SHISA6
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Drugs & Compoundsfor SHISA6 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SHISA6 Search CenterWatch for drugs/clinical trials and news about SHISA6 / SHSA6
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Transcriptsfor SHISA6 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SHISA6 gene (4 alternative transcripts): NM_175903.2 NM_001173461.1 NM_001173462.1 NM_207386.3 Unigene Cluster for SHISA6:
Shisa homolog 6 (Xenopus laevis) Hs.592124 [show with all ESTs ] Unigene Representative Sequence: NM_207386 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000441885 (uc002gnc.2 ) ENST00000432116 (uc010com.3 ) ENST00000409168 (uc002gna.4 uc010con.3 )ENST00000343478 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SHISA6 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SHISA6 (see all 4 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): SHISA6 (NM_207386 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SHISA6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SHISA6
Additional cDNA sequence: AK094349.1 AK095052.1 AK127379.1 AK128003.1 BC105704.1 BC105705.1 BC105706.1 BC105707.1 DQ070854.1
6 DOTS entries : DT.92043545 DT.101976590
DT.101976589 DT.441340 DT.120996616 DT.40289368 10 AceView cDNA sequences :
NM_207386 AA441990 AK127379 AK128003 AA460977 AI370640 BX109938 AI126777 R46311 AA461286 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for SHISA6 About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b SP1 :               SP2 :       -         SP3 :     -   -        
ECgene alternative splicing isoforms for SHISA6
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Expression for SHISA6 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SHISA6 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TACTGTAAACAbout this image SHISA6 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Eye Inner Nuclear Layer nGnG Amacrine Cells Amacrine, Retina Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
Stem Cell Differentiation: 1 LifeMap Cell Name Category Definitive endoderm-like cells (A scalable, suspensi... )
See SHISA6 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SHISA6 SOURCE GeneReport for Unigene cluster: Hs.592124 UniProtKB/Swiss-Prot: SHSA6_HUMAN, Q6ZSJ9 Tissue specificity : Expressed in the developing ventral mesencephalon SABiosciences Custom PCR Arrays for SHISA6 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SHISA6Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SHISA6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SHISA6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SHISA6 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SHISA6
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Orthologsfor SHISA6 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for SHISA6 gene from 3/9 species (see all 9 ) About this table
ENSEMBL Gene Tree for SHISA6 (if available)TreeFam Gene Tree for SHISA6 (if available)
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Paralogsfor SHISA6 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SHISA6 gene SHISA8 2 SHISA7 2 SHISA9 2 2 SIMAP similar genes for SHISA6 using alignment to 1 protein entry: SHSA6_HUMAN :SHISA9 SHISA7
SHISA6 for paralogs About GeneDecksing
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Genomic Variantsfor SHISA6 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 17 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SHISA6 (11144580 - 11394580 bp, first 250kb of SHISA6)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 7 variations for SHISA6 4 CNVs : 67136 35427 0494 7141 3 Indels : 67137 72792 72793
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SHISA6
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Disorders
/ Diseasesfor SHISA6 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section SHISA6 for disorders About MalaCards
SHISA6 for disorders About GeneDecksing Human Genome Epidemiology (HuGE) Navigator: SHISA6 (1 document)Export disorders for SHISA6 gene to outside databases
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Publicationsfor SHISA6 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SHISA6 gene integrated from 9 sources : (articles sorted by number of sources associating them with SHISA6) Utopia : connect your pdf to the dynamic world of online information
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196) 2 Zody M.C.... Nusbaum C. (2006) Identification of novel genes regulated in the developing human ventral mesencephalon. (PubMed id 16473350) 2 Jorgensen J.R....Wahlberg L.U. (2006) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for SHISA6 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SHISA6 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SHISA6 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SHISA6 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SHISA6 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SHISA6 gene: Search GeneIP for patents involving SHISA6 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SHISA6 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SHISA6 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SHISA6 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SHISA6 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SHISA6 OriGene 3'-UTR Clone for SHISA6 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SHISA6 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SHISA6 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SHISA6 OriGene Custom Protein Services for SHISA6 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SHISA6 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SHISA6 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SHISA6 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SHISA6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SHISA6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SHISA6
Search Tocris compounds for SHISA6
SHISA6 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SHISA6
Search ThermoFisher Antibodies for SHISA6
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SHISA6
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Aliases for SHISA6
Databases for SHISA6
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Domains / Families for SHISA6
Drugs / Compounds for SHISA6
Expression for SHISA6
Function for SHISA6
Genomic Views for SHISA6
Intellectual Property for SHISA6
Orthologs for SHISA6
Paralogs for SHISA6
Pathways / Interactions for SHISA6
Products for SHISA6
Proteins for SHISA6
Publications for SHISA6
Search Box for SHISA6
Summaries for SHISA6
Transcripts for SHISA6
Variants for SHISA6
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