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Aliases for SHISA3 Gene

Aliases for SHISA3 Gene

  • Shisa Family Member 3 2 3 5
  • Shisa Homolog 3 (Xenopus Laevis) 2
  • Shisa Homolog 3 3
  • HShisa3 3

External Ids for SHISA3 Gene

Previous GeneCards Identifiers for SHISA3 Gene

  • GC04P042095
  • GC04P041721

Summaries for SHISA3 Gene

GeneCards Summary for SHISA3 Gene

SHISA3 (Shisa Family Member 3) is a Protein Coding gene. Among its related pathways are Non-Canonical Wnt Pathway. An important paralog of this gene is SHISA2.

UniProtKB/Swiss-Prot for SHISA3 Gene

  • Plays an essential role in the maturation of presomitic mesoderm cells by individual attenuation of both FGF and WNT signaling.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHISA3 Gene

Genomics for SHISA3 Gene

Regulatory Elements for SHISA3 Gene

Enhancers for SHISA3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SHISA3 on UCSC Golden Path with GeneCards custom track

Promoters for SHISA3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SHISA3 on UCSC Golden Path with GeneCards custom track

Genomic Location for SHISA3 Gene

Chromosome:
4
Start:
42,397,839 bp from pter
End:
42,402,487 bp from pter
Size:
4,649 bases
Orientation:
Plus strand

Genomic View for SHISA3 Gene

Genes around SHISA3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHISA3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHISA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHISA3 Gene

Proteins for SHISA3 Gene

  • Protein details for SHISA3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0PJX4-SHSA3_HUMAN
    Recommended name:
    Protein shisa-3 homolog
    Protein Accession:
    A0PJX4
    Secondary Accessions:
    • A0PJX3
    • Q96EQ5

    Protein attributes for SHISA3 Gene

    Size:
    238 amino acids
    Molecular mass:
    25832 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SHISA3 Gene

Proteomics data for SHISA3 Gene at MOPED

Post-translational modifications for SHISA3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SHISA3 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for SHISA3

No data available for DME Specific Peptides for SHISA3 Gene

Domains & Families for SHISA3 Gene

Gene Families for SHISA3 Gene

Protein Domains for SHISA3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SHISA3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A0PJX4

UniProtKB/Swiss-Prot:

SHSA3_HUMAN :
  • Belongs to the shisa family.
Family:
  • Belongs to the shisa family.
genes like me logo Genes that share domains with SHISA3: view

Function for SHISA3 Gene

Molecular function for SHISA3 Gene

UniProtKB/Swiss-Prot Function:
Plays an essential role in the maturation of presomitic mesoderm cells by individual attenuation of both FGF and WNT signaling.

Phenotypes for SHISA3 Gene

MGI mutant phenotypes for SHISA3:
inferred from 1 alleles
GenomeRNAi human phenotypes for SHISA3:
genes like me logo Genes that share phenotypes with SHISA3: view

Animal Models for SHISA3 Gene

MGI Knock Outs for SHISA3:

Animal Model Products

  • Taconic Biosciences Mouse Models for SHISA3

CRISPR Products

miRNA for SHISA3 Gene

miRTarBase miRNAs that target SHISA3

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SHISA3 Gene

Localization for SHISA3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SHISA3 Gene

Endoplasmic reticulum membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SHISA3 Gene COMPARTMENTS Subcellular localization image for SHISA3 gene
Compartment Confidence
endoplasmic reticulum 3
extracellular 3
plasma membrane 3
cytosol 2

Gene Ontology (GO) - Cellular Components for SHISA3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SHISA3: view

Pathways & Interactions for SHISA3 Gene

SuperPathways for SHISA3 Gene

genes like me logo Genes that share pathways with SHISA3: view

Pathways by source for SHISA3 Gene

2 Sino Biological pathways for SHISA3 Gene

Interacting Proteins for SHISA3 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000326445%0d%0a9606.ENSP00000318914%0d%0a
Selected Interacting proteins: ENSP00000326445 A0PJX4-SHSA3_HUMAN for SHISA3 Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for SHISA3 Gene

None

No data available for SIGNOR curated interactions for SHISA3 Gene

Drugs & Compounds for SHISA3 Gene

No Compound Related Data Available

Transcripts for SHISA3 Gene

mRNA/cDNA for SHISA3 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(30) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SHISA3 Gene

Shisa homolog 3 (Xenopus laevis):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SHISA3 Gene

No ASD Table

Relevant External Links for SHISA3 Gene

GeneLoc Exon Structure for
SHISA3
ECgene alternative splicing isoforms for
SHISA3

Expression for SHISA3 Gene

mRNA expression in normal human tissues for SHISA3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SHISA3 Gene

This gene is overexpressed in Kidney - Cortex (x5.5), Nerve - Tibial (x4.9), and Heart - Atrial Appendage (x4.3).

SOURCE GeneReport for Unigene cluster for SHISA3 Gene Hs.370904

genes like me logo Genes that share expression patterns with SHISA3: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SHISA3 Gene

Orthologs for SHISA3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SHISA3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SHISA3 35
  • 91.22 (n)
  • 95.98 (a)
SHISA3 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SHISA3 35
  • 79.77 (n)
  • 82.08 (a)
SHISA3 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Shisa3 35
  • 87.8 (n)
  • 94.2 (a)
Shisa3 16
Shisa3 36
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SHISA3 35
  • 99.58 (n)
  • 99.16 (a)
SHISA3 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Shisa3 35
  • 87.05 (n)
  • 93.75 (a)
oppossum
(Monodelphis domestica)
Mammalia SHISA3 36
  • 91 (a)
OneToOne
chicken
(Gallus gallus)
Aves SHISA3 35
  • 73.73 (n)
  • 74.19 (a)
SHISA3 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SHISA3 36
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia shisa3 35
  • 71.39 (n)
  • 76.61 (a)
zebrafish
(Danio rerio)
Actinopterygii shisa3 35
  • 64.71 (n)
  • 65.61 (a)
shisa3 36
  • 52 (a)
OneToOne
Species with no ortholog for SHISA3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SHISA3 Gene

ENSEMBL:
Gene Tree for SHISA3 (if available)
TreeFam:
Gene Tree for SHISA3 (if available)

Paralogs for SHISA3 Gene

Paralogs for SHISA3 Gene

(1) SIMAP similar genes for SHISA3 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for SHISA3 Gene

genes like me logo Genes that share paralogs with SHISA3: view

Variants for SHISA3 Gene

Sequence variations from dbSNP and Humsavar for SHISA3 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs11733156 - 42,398,095(+) GGCTG(G/T)CTGCG reference, missense
rs2046633 -- 42,397,000(+) AAACC(A/G)TGTTC upstream-variant-2KB
rs2242335 -- 42,396,886(+) AGCCG(A/G)CGGAA upstream-variant-2KB
rs2242336 -- 42,397,055(+) GTCTG(C/T)GCAAC upstream-variant-2KB
rs2632704 -- 42,396,697(+) CCCTG(A/G)AAATA upstream-variant-2KB

Variation tolerance for SHISA3 Gene

Residual Variation Intolerance Score: 41.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.36; 81.64% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for SHISA3 Gene

Disorders for SHISA3 Gene

Relevant External Links for SHISA3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SHISA3

No disorders were found for SHISA3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHISA3 Gene

Publications for SHISA3 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 67
  2. Mouse homologues of Shisa antagonistic to Wnt and Fgf signalings. (PMID: 17481602) Furushima K. … Aizawa S. (Dev. Biol. 2007) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SHISA3 Gene

Sources for SHISA3 Gene

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