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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SHISA3 Gene

protein-coding   GIFtS: 41
GCID: GC04P042399

Shisa Family Member 3

(Previous name: shisa homolog 3 (Xenopus laevis))
  Search for SHISA3
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Shisa Family Member 31 2
Shisa Homolog 3 (Xenopus Laevis)1
hShisa32
Protein Shisa-3 Homolog2
Shisa Homolog 32

External Ids:    HGNC: 251591   Entrez Gene: 1525732   Ensembl: ENSG000001783437   UniProtKB: A0PJX43   

Export aliases for SHISA3 gene to outside databases

Previous GC identifers: GC04P042095 GC04P041721


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SHISA3 Gene: 
SHISA3 (shisa family member 3) is a protein-coding gene. Among its related super-pathways are Non-Canonical Wnt Pathway. An important paralog of this gene is SHISA2.

UniProtKB/Swiss-Prot: SHSA3_HUMAN, A0PJX4
Function: Plays an essential role in the maturation of presomitic mesoderm cells by individual attenuation of both
FGF and WNT signaling (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.2  NT_006238.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SHISA3 gene promoter:
         E2F-3a   E2F-4   E2F-5   E2F-2   S8   SRY   E2F-1   E2F   FOXJ2 (long isoform)   FOXJ2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for SHISA3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SHISA3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p13   Ensembl cytogenetic band:  4p13   HGNC cytogenetic band: 4p13

SHISA3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SHISA3 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P042399:  view genomic region     (about GC identifiers)

Start:
42,399,856 bp from pter      End:
42,404,504 bp from pter
Size:
4,649 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: SHSA3_HUMAN, A0PJX4 (See protein sequence)
Recommended Name: Protein shisa-3 homolog precursor  
Size: 238 amino acids; 25832 Da
Subcellular location: Endoplasmic reticulum membrane; Single-pass type I membrane protein (By similarity)
Secondary accessions: A0PJX3 Q96EQ5

Explore the universe of human proteins at neXtProt for SHISA3: NX_A0PJX4

Explore proteomics data for SHISA3 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_A0PJX4

  • SHISA3 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SHISA3 Protein Expression
    REFSEQ proteins: NP_001073974.1  
    ENSEMBL proteins: 
     ENSP00000326445  

    Human Recombinant Protein Products for SHISA3: 
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    Novus Biologicals SHISA3 Lysate
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    Cloud-Clone Corp. Proteins for SHISA3 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005789endoplasmic reticulum membrane IEA--
    GO:0016021integral to membrane IEA--

    SHISA3 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    SHISA: Shisa homologs

    1 InterPro protein domain:
     IPR026910 Shisa

    Graphical View of Domain Structure for InterPro Entry A0PJX4

    ProtoNet protein and cluster: A0PJX4

    UniProtKB/Swiss-Prot: SHSA3_HUMAN, A0PJX4
    Similarity: Belongs to the shisa family


    SHISA3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: SHSA3_HUMAN, A0PJX4
    Function: Plays an essential role in the maturation of presomitic mesoderm cells by individual attenuation of both
    FGF and WNT signaling (By similarity)

    Phenotypes:
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Shisa3):

     normal 

    SHISA3 for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for SHISA3 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for SHISA3

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for SHISA3 
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for SHISA3 About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Canonical Wnt Pathway
    Canonical Wnt Pathway0.53
    Non-Canonical Wnt Pathway0.53


    2 Sino Biological Pathways for SHISA3 
        Canonical Wnt Pathway
    Non-Canonical Wnt Pathway


    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SHISA3

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007275multicellular organismal development IEA--

    SHISA3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SHISA3 (SHSA3)

    Search CenterWatch for drugs/clinical trials and news about SHISA3 / SHSA3

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SHISA3 gene: 
    NM_001080505.1  

    Unigene Cluster for SHISA3:

    Shisa homolog 3 (Xenopus laevis)
    Hs.370904  [show with all ESTs]
    Unigene Representative Sequence: NM_001080505
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000319234(uc003gwp.3)
    miRNA
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    8/10 QIAGEN miScript miRNA Assays for microRNAs that regulate SHISA3 (see all 10):
    hsa-miR-323-3p hsa-miR-4307 hsa-miR-520d-5p hsa-miR-4282 hsa-miR-33a* hsa-miR-129-3p hsa-miR-524-5p hsa-miR-32*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for SHISA3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SHISA3
    Clone
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    DNA2.0 Custom Codon Optimized Gene Synthesis Service for SHISA3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SHISA3
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SHISA3
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SHISA3

    Additional mRNA sequence: 

    BC012029.1 BC127690.1 BC127691.1 

    2 DOTS entries:

    DT.207977  DT.99943302 

    24/30 AceView cDNA sequences (see all 30):

    AW241377 BE350501 CB410420 BU682769 CR624275 AA573206 AI540415 BI759667 
    BC012029 BG284787 BG779845 BX354731 BX354732 AA131359 BG179496 AI522318 
    BU858908 AI735586 BG254440 BE326906 BX328985 AI376670 BF668303 BX328986 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SHISA3 expression in normal human tissues (normalized intensities)      SHISA3 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AACTCTAAAA
    SHISA3 Expression
    About this image


    SHISA3 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/15 selected tissues (see all 15) fully expand
     
     Neural Tube (Nervous System)    fully expand to see all 4 entries
             Mesencephalic Ventricular Zone
             brain/midbrain/lateral wall   
     
     Kidney (Urinary System)    fully expand to see all 2 entries
             Metanephric Mesenchyme Cells Metanephric Mesenchyme
             Metanephros
     
     Gut Tube (Gastrointestinal Tract)    fully expand to see all 2 entries
             Foregut
             Definitive endoderm-like cells ( A scalable, suspension protocol for derivation of...
     
     Heart (Cardiovascular System)    fully expand to see all 2 entries
             Beating cell clusters ( Spontaneous differentiation of cardiomyocytes and further...
             Human Cardiac Fibroblasts-adult ventrical (HCF-av)   
     
     Smooth Muscle (Muscoskeletal System)    fully expand to see all 2 entries
             Human Intestinal Smooth Muscle Cells (HISMC)   

    See SHISA3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SHISA3

    SOURCE GeneReport for Unigene cluster: Hs.370904
        SABiosciences Custom PCR Arrays for SHISA3
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SHISA3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for SHISA3 gene from 4/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Shisa31 , 5 shisa homolog 3 (Xenopus laevis)1, 5 87.11(n)1
    92.86(a)1
      5 (36.15 cM)5
    3300961  NM_001033415.31  NP_001028587.11 
     676078835 
    chicken
    (Gallus gallus)
    Aves LOC1008573191 protein shisa-3 homolog 69.74(n)
    71.05(a)
      100857319  XM_003641241.1  XP_003641289.1 
    lizard
    (Anolis carolinensis)
    Reptilia SHISA36
    shisa homolog 3 (Xenopus laevis)
    61(a)
    1 ↔ 1
    5(101291366-101296093)
    zebrafish
    (Danio rerio)
    Actinopterygii shisa36
    shisa26
    shisa homolog 2 (Xenopus laevis)
    54(a)
    27(a)
    1 ↔ 1
    possible ortholog
    14(48138708-48144926)
    5(23850898-23853557)


    ENSEMBL Gene Tree for SHISA3 (if available)
    TreeFam Gene Tree for SHISA3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SHISA3 gene
    SHISA22  
    1 SIMAP similar gene for SHISA3 using alignment to 1 protein entry:     SHSA3_HUMAN:
    SHISA2

    SHISA3 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for SHISA3
    PGOHUM00000241812


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/176 SNPs in SHISA3 are shown (see all 176)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1442839831,2
    --42397868(+) TAGCAA/GTAAAC 1 -- us2k10--------
    rs1487810541,2
    --42397950(+) CTGTAA/GTTGCT 1 -- us2k10--------
    rs1894597621,2
    --42397954(+) AATTGC/TTCAGG 1 -- us2k10--------
    rs669446681,2
    C--42398032(+) AGACCT/-TTTTT 1 -- us2k11Minor allele frequency- -:0.50NA 2
    rs124994831,2
    H--42398071(+) AATTTC/GTGCAA 1 -- us2k10--------
    rs1437804421,2
    C--42398166(+) CTTAAG/TAGCTT 1 -- us2k10--------
    rs579551631,2
    C,F--42398279(+) ATAACT/AAAATG 1 -- us2k12Minor allele frequency- A:0.12WA 120
    rs609560191,2
    C,F--42398334(+) TTGGAA/GTATAC 1 -- us2k13Minor allele frequency- G:0.12WA CSA 122
    rs105614461,2
    C--42398352(+) TAGAT-/A/AA/ 
    AAA
    /AAAA
    AAAAA
    2 -- us2k1 cds12NA CSA 4
    rs573942501,2
    C--42398352(+) TAGAT-/AAAAAAAA 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for SHISA3 (42399856 - 42404504 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for SHISA3: --
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing SHISA3
    DNA2.0 Custom Variant and Variant Library Synthesis for SHISA3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SHISA3 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with SHISA3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Mouse homologues of Shisa antagonistic to Wnt and Fgf signalings. (PubMed id 17481602)1 Furushima K....Aizawa S. (2007)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    4. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 152573 HGNC: 25159 AceView: LOC152573 Ensembl:ENSG00000178343 euGenes: HUgn152573
    ECgene: SHISA3 H-InvDB: SHISA3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SHISA3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SHISA3 gene:
    Search GeneIP for patents involving SHISA3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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