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Aliases for SHISA2 Gene

Aliases for SHISA2 Gene

  • Shisa Family Member 2 2 3
  • Transmembrane Protein 46 2 3 4
  • C13orf13 3 4
  • TMEM46 3 4
  • Chromosome 13 Open Reading Frame 13 2
  • Shisa Homolog 2 (Xenopus Laevis) 2
  • Protein Shisa-2 Homolog 3
  • Shisa Homolog 2 3
  • BA398O19.2 3
  • PRO28631 3
  • WGAR9166 3
  • HShisa 3

External Ids for SHISA2 Gene

Previous HGNC Symbols for SHISA2 Gene

  • C13orf13
  • TMEM46

Previous GeneCards Identifiers for SHISA2 Gene

  • GC13M025516
  • GC13M026618
  • GC13M007436

Summaries for SHISA2 Gene

GeneCards Summary for SHISA2 Gene

SHISA2 (Shisa Family Member 2) is a Protein Coding gene. An important paralog of this gene is SHISA3.

UniProtKB/Swiss-Prot for SHISA2 Gene

  • Plays an essential role in the maturation of presomitic mesoderm cells by individual attenuation of both FGF and WNT signaling.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHISA2 Gene

Genomics for SHISA2 Gene

Regulatory Elements for SHISA2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SHISA2 Gene

26,044,597 bp from pter
26,051,060 bp from pter
6,464 bases
Minus strand

Genomic View for SHISA2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SHISA2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHISA2 Gene

Proteins for SHISA2 Gene

  • Protein details for SHISA2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein shisa-2 homolog
    Protein Accession:
    Secondary Accessions:
    • B9EH70
    • Q5W0G8

    Protein attributes for SHISA2 Gene

    295 amino acids
    Molecular mass:
    31375 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SHISA2 Gene

Proteomics data for SHISA2 Gene at MOPED

Post-translational modifications for SHISA2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SHISA2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SHISA2 Gene

Domains for SHISA2 Gene

Gene Families for SHISA2 Gene

Protein Domains for SHISA2 Gene


Suggested Antigen Peptide Sequences for SHISA2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the shisa family.
  • Belongs to the shisa family.
genes like me logo Genes that share domains with SHISA2: view

Function for SHISA2 Gene

Molecular function for SHISA2 Gene

UniProtKB/Swiss-Prot Function:
Plays an essential role in the maturation of presomitic mesoderm cells by individual attenuation of both FGF and WNT signaling.

Phenotypes for SHISA2 Gene

genes like me logo Genes that share phenotypes with SHISA2: view

Animal Models for SHISA2 Gene

MGI Knock Outs for SHISA2:

Animal Model Products

miRNA for SHISA2 Gene

miRTarBase miRNAs that target SHISA2

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SHISA2

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Transcription Factor Targeting and HOMER Transcription for SHISA2 Gene

Localization for SHISA2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SHISA2 Gene

Endoplasmic reticulum membrane; Single-pass type I membrane protein.

Subcellular locations from

Jensen Localization Image for SHISA2 Gene COMPARTMENTS Subcellular localization image for SHISA2 gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 3
plasma membrane 2

Gene Ontology (GO) - Cellular Components for SHISA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum --
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SHISA2: view

Pathways for SHISA2 Gene

SuperPathways for SHISA2 Gene

No Data Available

Interacting Proteins for SHISA2 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
Selected Interacting proteins: ENSP00000313079 for SHISA2 Gene via STRING

Gene Ontology (GO) - Biological Process for SHISA2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organismal development IEA --
genes like me logo Genes that share ontologies with SHISA2: view

No data available for Pathways by source for SHISA2 Gene

Transcripts for SHISA2 Gene

mRNA/cDNA for SHISA2 Gene

(5) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SHISA2 Gene

Shisa homolog 2 (Xenopus laevis):
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SHISA2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SHISA2 Gene

No ASD Table

Relevant External Links for SHISA2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SHISA2 Gene

mRNA expression in normal human tissues for SHISA2 Gene

mRNA differential expression in normal tissues according to GTEx for SHISA2 Gene

This gene is overexpressed in Thyroid (10.5) and Muscle - Skeletal (4.7).

Protein differential expression in normal tissues for SHISA2 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SHISA2 Gene

SOURCE GeneReport for Unigene cluster for SHISA2 Gene Hs.433791

genes like me logo Genes that share expressions with SHISA2: view

Expression partners for SHISA2 Gene

* - Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SHISA2 Gene

Orthologs for SHISA2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SHISA2 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SHISA2 35
  • 88.72 (n)
  • 94.62 (a)
  • 92 (a)
(Canis familiaris)
Mammalia SHISA2 35
  • 91.32 (n)
  • 95.09 (a)
  • 92 (a)
(Mus musculus)
Mammalia Shisa2 35
  • 86.89 (n)
  • 92.54 (a)
Shisa2 16
Shisa2 36
  • 93 (a)
(Pan troglodytes)
Mammalia SHISA2 35
  • 99.21 (n)
  • 99.66 (a)
  • 100 (a)
(Rattus norvegicus)
Mammalia Shisa2 35
  • 87.01 (n)
  • 92.54 (a)
(Monodelphis domestica)
Mammalia SHISA2 36
  • 91 (a)
(Ornithorhynchus anatinus)
Mammalia SHISA2 36
  • 95 (a)
(Gallus gallus)
Aves SHISA2 35
  • 82.38 (n)
  • 88.51 (a)
  • 87 (a)
(Anolis carolinensis)
Reptilia SHISA2 36
  • 81 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia shisa2 35
  • 75.8 (n)
  • 85.1 (a)
African clawed frog
(Xenopus laevis)
Amphibia MGC68837 35
(Danio rerio)
Actinopterygii LOC100537021 35
  • 66.25 (n)
  • 69.04 (a)
  • 56 (a)
Species with no ortholog for SHISA2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SHISA2 Gene

Gene Tree for SHISA2 (if available)
Gene Tree for SHISA2 (if available)

Paralogs for SHISA2 Gene

Paralogs for SHISA2 Gene

(1) SIMAP similar genes for SHISA2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SHISA2: view

Variants for SHISA2 Gene

Sequence variations from dbSNP and Humsavar for SHISA2 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs1055252 -- 26,044,784(-) CAAAT(C/T)GCTGT utr-variant-3-prime
rs3088377 -- 26,052,491(+) TGTGT(C/T)TGGTG upstream-variant-2KB
rs4769452 -- 26,050,997(+) CGGAC(A/G)GCGCG utr-variant-5-prime
rs4770907 -- 26,049,671(+) TCTCT(C/T)ACGAG intron-variant
rs4770908 -- 26,049,749(+) TCAGG(A/G)TGCTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SHISA2 Gene

Variant ID Type Subtype PubMed ID
nsv435952 OTHER Inversion 17901297
esv2747161 CNV Deletion 23290073
nsv832569 CNV Loss 17160897

Relevant External Links for SHISA2 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SHISA2 Gene

Disorders for SHISA2 Gene

Relevant External Links for SHISA2

Genetic Association Database (GAD)

No disorders were found for SHISA2 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for SHISA2 Gene

Publications for SHISA2 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  2. Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PMID: 15340161) Zhang Z. … Henzel W.J. (Protein Sci. 2004) 3 4
  3. Mouse homologues of Shisa antagonistic to Wnt and Fgf signalings. (PMID: 17481602) Furushima K. … Aizawa S. (Dev. Biol. 2007) 3
  4. Genome-scale RNAi screen for host factors required for HIV replication. (PMID: 18976975) Zhou H. … Espeseth A.S. (Cell Host Microbe 2008) 3
  5. Proteomics strategy to identify substrates of LNX, a PDZ domain-containing E3 ubiquitin ligase. (PMID: 22889411) Guo Z. … Gao Y. (J. Proteome Res. 2012) 3

Products for SHISA2 Gene

Sources for SHISA2 Gene

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