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Aliases for SHF Gene

Aliases for SHF Gene

  • Src Homology 2 Domain Containing F 2 3 5
  • SH2 Domain-Containing Adapter Protein F 3
  • CTD-2651B20.7 3

External Ids for SHF Gene

Previous GeneCards Identifiers for SHF Gene

  • GC15M043247
  • GC15M045459
  • GC15M022283

Summaries for SHF Gene

GeneCards Summary for SHF Gene

SHF (Src Homology 2 Domain Containing F) is a Protein Coding gene. Among its related pathways are PDGFR-alpha signaling pathway. An important paralog of this gene is SHB.

UniProtKB/Swiss-Prot for SHF Gene

  • Adapter protein which may play a role in the regulation of apoptosis in response to PDGF.

Additional gene information for SHF Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHF Gene

Genomics for SHF Gene

GeneHancer (GH) Regulatory Elements for SHF Gene

Promoters and enhancers for SHF Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I045197 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 554.8 +1.4 1403 4.3 MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 NFYC MEF2D SHF ENSG00000259932 TRH-GTG1-7 TRH-GTG1-9 TRH-GTG1-8 CTDSPL2 SPATA5L1 SPG11 ENSG00000259563 DUOX1
GH15I045185 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 550.4 +13.9 13865 3.1 HDGF PKNOX1 ARID4B SIN3A IRF4 ZNF48 ATF7 RUNX3 RXRA REST SHF DUOX1 DUOXA1 LOC101928414 TRH-GTG1-7 ENSG00000259519
GH15I045180 Promoter/Enhancer 1.3 EPDnew ENCODE dbSUPER 550.3 +20.7 20662 1 SOX13 FOXA2 FOXA3 TEAD3 ZNF316 IKZF1 TRIM24 PRDM1 SHF ENSG00000259539 LOC101928414 ENSG00000259519 TRH-GTG1-7
GH15I045165 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 13.5 +33.5 33477 4.7 HDGF PKNOX1 ATF1 SIN3A FEZF1 YY1 TCF12 POLR2B ZNF766 ZNF207 ENSG00000259539 DUOXA1 CTDSPL2 SPG11 SHF ENSG00000259563 DUOX1 SPATA5L1 SLC28A2 DUOX2
GH15I045161 Enhancer 1.3 Ensembl ENCODE dbSUPER 13.5 +38.4 38435 1.8 HDGF RB1 ARNT ARID4B SIN3A IRF4 RAD21 RFX5 ZNF335 ARID2 DUOXA1 ENSG00000259539 SHF DUOX1 SLC28A2 DUOX2 GC15P045136 GC15P045137 GC15P045139 GC15P045141
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SHF on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SHF gene promoter:

Genomic Locations for SHF Gene

Genomic Locations for SHF Gene
chr15:45,167,214-45,201,329
(GRCh38/hg38)
Size:
34,116 bases
Orientation:
Minus strand
chr15:45,459,412-45,493,373
(GRCh37/hg19)

Genomic View for SHF Gene

Genes around SHF on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHF Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHF Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHF Gene

Proteins for SHF Gene

  • Protein details for SHF Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7M4L6-SHF_HUMAN
    Recommended name:
    SH2 domain-containing adapter protein F
    Protein Accession:
    Q7M4L6
    Secondary Accessions:
    • Q96IE8

    Protein attributes for SHF Gene

    Size:
    423 amino acids
    Molecular mass:
    46768 Da
    Quaternary structure:
    • Interacts with phosphorylated Tyr-720 of PDGFRA via its SH2 domain.
    Miscellaneous:
    • The sequence described in PubMed:11095946 is over-extended by 57 aa at the N-terminus due to the presence of an uncorrected 5 mismatch compared to the reference genome sequence.

    Alternative splice isoforms for SHF Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SHF Gene

Post-translational modifications for SHF Gene

No data available for DME Specific Peptides for SHF Gene

Domains & Families for SHF Gene

Gene Families for SHF Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for SHF Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SHF: view

No data available for UniProtKB/Swiss-Prot for SHF Gene

Function for SHF Gene

Molecular function for SHF Gene

UniProtKB/Swiss-Prot Function:
Adapter protein which may play a role in the regulation of apoptosis in response to PDGF.

Phenotypes From GWAS Catalog for SHF Gene

Gene Ontology (GO) - Molecular Function for SHF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005070 SH3/SH2 adaptor activity IBA --
genes like me logo Genes that share ontologies with SHF: view

Phenotypes for SHF Gene

GenomeRNAi human phenotypes for SHF:
genes like me logo Genes that share phenotypes with SHF: view

Clone Products

  • Addgene plasmids for SHF

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHF Gene

Localization for SHF Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SHF gene
Compartment Confidence
nucleus 3
cytosol 3

Subcellular locations from the

Human Protein Atlas (HPA)

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SHF Gene

Pathways & Interactions for SHF Gene

genes like me logo Genes that share pathways with SHF: view

Pathways by source for SHF Gene

1 BioSystems pathway for SHF Gene

Interacting Proteins for SHF Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000290894%0d%0a9606.ENSP00000257290%0d%0a
Selected Interacting proteins: Q7M4L6-SHF_HUMAN ENSP00000290894 for SHF Gene via IID STRING

Gene Ontology (GO) - Biological Process for SHF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IEA --
GO:0007165 signal transduction IBA --
GO:0009967 positive regulation of signal transduction IEA --
genes like me logo Genes that share ontologies with SHF: view

No data available for SIGNOR curated interactions for SHF Gene

Drugs & Compounds for SHF Gene

No Compound Related Data Available

Transcripts for SHF Gene

Unigene Clusters for SHF Gene

Src homology 2 domain containing F:
Representative Sequences:

Clone Products

  • Addgene plasmids for SHF

Alternative Splicing Database (ASD) splice patterns (SP) for SHF Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c · 8d · 8e · 8f · 8g ^ 9 ^ 10a · 10b
SP1: - - - - - -
SP2: -
SP3: - - -
SP4: - - - - - - -
SP5:
SP6: - - - - - -
SP7: - - -
SP8: - - - - -

Relevant External Links for SHF Gene

GeneLoc Exon Structure for
SHF
ECgene alternative splicing isoforms for
SHF

Expression for SHF Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SHF Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SHF Gene

This gene is overexpressed in Brain - Cerebellum (x10.4) and Brain - Cerebellar Hemisphere (x10.0).

Protein differential expression in normal tissues from HIPED for SHF Gene

This gene is overexpressed in Heart (46.1) and Fetal Brain (22.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SHF Gene



Protein tissue co-expression partners for SHF Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SHF Gene:

SHF

SOURCE GeneReport for Unigene cluster for SHF Gene:

Hs.310399

mRNA Expression by UniProt/SwissProt for SHF Gene:

Q7M4L6-SHF_HUMAN
Tissue specificity: Expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine and colon.

Evidence on tissue expression from TISSUES for SHF Gene

  • Nervous system(2.8)
genes like me logo Genes that share expression patterns with SHF: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for SHF Gene

Orthologs for SHF Gene

This gene was present in the common ancestor of animals.

Orthologs for SHF Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SHF 33 34
  • 99.29 (n)
cow
(Bos Taurus)
Mammalia SHF 33 34
  • 94.52 (n)
dog
(Canis familiaris)
Mammalia SHF 33 34
  • 94.41 (n)
rat
(Rattus norvegicus)
Mammalia Shf 33
  • 93.12 (n)
mouse
(Mus musculus)
Mammalia Shf 33 16 34
  • 92.72 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SHF 34
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SHF 34
  • 78 (a)
OneToOne
chicken
(Gallus gallus)
Aves SHF 33 34
  • 71.77 (n)
lizard
(Anolis carolinensis)
Reptilia SHF 34
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia shf 33
  • 70.23 (n)
zebrafish
(Danio rerio)
Actinopterygii SHF 34
  • 76 (a)
OneToOne
si:ch73-116f3.3 33
  • 66.04 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG43921 34
  • 6 (a)
OneToMany
Species where no ortholog for SHF was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SHF Gene

ENSEMBL:
Gene Tree for SHF (if available)
TreeFam:
Gene Tree for SHF (if available)

Paralogs for SHF Gene

Paralogs for SHF Gene

genes like me logo Genes that share paralogs with SHF: view

Variants for SHF Gene

Sequence variations from dbSNP and Humsavar for SHF Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000086737 -- 45,189,769(-) T/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000323140 -- 45,170,444(-) T/C 3_prime_UTR_variant, genic_downstream_transcript_variant, intron_variant
rs1000454346 -- 45,196,878(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000455294 -- 45,177,431(-) T/G intron_variant
rs1000574303 -- 45,195,299(-) T/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SHF Gene

Variant ID Type Subtype PubMed ID
dgv738e212 CNV loss 25503493
esv3581685 CNV loss 25503493
nsv1071210 CNV deletion 25765185
nsv518213 CNV gain 19592680
nsv569312 CNV loss 21841781
nsv569315 CNV gain 21841781

Variation tolerance for SHF Gene

Residual Variation Intolerance Score: 69.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.45; 71.49% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SHF Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHF

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SHF Gene

Disorders for SHF Gene

Additional Disease Information for SHF

No disorders were found for SHF Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHF Gene

Publications for SHF Gene

  1. Shf, a Shb-like adapter protein, is involved in PDGF-alpha-receptor regulation of apoptosis. (PMID: 11095946) Lindholm CK … Welsh M (Biochemical and biophysical research communications 2000) 2 3 4 58
  2. Novel adaptor protein Shf interacts with ALK receptor and negatively regulates its downstream signals in neuroblastoma. (PMID: 23360421) Takagi D … Nakagawara A (Cancer science 2013) 3 58
  3. Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia. (PMID: 22229870) Karns R … Deka R (Annals of human genetics 2012) 44 58
  4. A genome-wide association study identifies a novel major locus for glycemic control in type 1 diabetes, as measured by both A1C and glucose. (PMID: 19875614) Paterson AD … Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Research Group (Diabetes 2010) 44 58
  5. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody MC … Nusbaum C (Nature 2006) 4 58

Products for SHF Gene

  • Addgene plasmids for SHF

Sources for SHF Gene

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