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Aliases for SHC2 Gene

Aliases for SHC2 Gene

  • SHC (Src Homology 2 Domain Containing) Transforming Protein 2 2 3
  • SHCB 3 4 6
  • SCK 3 4 6
  • Src Homology 2 Domain-Containing-Transforming Protein C2 3 4
  • Neuronal Shc Adaptor Homolog 2 3
  • SHC-Transforming Protein B 3 4
  • SH2 Domain Protein C2 3 4
  • Protein Sck 3 4
  • SHC-Transforming Protein 2 3
  • SLI 3

External Ids for SHC2 Gene

Previous GeneCards Identifiers for SHC2 Gene

  • GC19U900043
  • GC19M000369
  • GC19M000186

Summaries for SHC2 Gene

GeneCards Summary for SHC2 Gene

SHC2 (SHC (Src Homology 2 Domain Containing) Transforming Protein 2) is a Protein Coding gene. Among its related pathways are Signaling by FGFR and Signaling by FGFR. An important paralog of this gene is SHC1.

UniProtKB/Swiss-Prot for SHC2 Gene

  • Signaling adapter that couples activated growth factor receptors to signaling pathway in neurons. Involved in the signal transduction pathways of neurotrophin-activated Trk receptors in cortical neurons (By similarity).

Gene Wiki entry for SHC2 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHC2 Gene

Genomics for SHC2 Gene

Regulatory Elements for SHC2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SHC2 Gene

Start:
416,583 bp from pter
End:
460,996 bp from pter
Size:
44,414 bases
Orientation:
Minus strand

Genomic View for SHC2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SHC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHC2 Gene

Proteins for SHC2 Gene

  • Protein details for SHC2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P98077-SHC2_HUMAN
    Recommended name:
    SHC-transforming protein 2
    Protein Accession:
    P98077
    Secondary Accessions:
    • O60230
    • Q9NPL5
    • Q9UCX4

    Protein attributes for SHC2 Gene

    Size:
    582 amino acids
    Molecular mass:
    61916 Da
    Quaternary structure:
    • Interacts with the Trk receptors in a phosphotyrosine-dependent manner and MEGF12. Once activated, binds to GRB2.
    Miscellaneous:
    • PubMed:15057824 has shown that SHC2 is poorly phosphorylated by the Trk receptors, in opposite to PubMed:12006576

neXtProt entry for SHC2 Gene

Proteomics data for SHC2 Gene at MOPED

Post-translational modifications for SHC2 Gene

Other Protein References for SHC2 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for SHC2 Gene

Domains for SHC2 Gene

Gene Families for SHC2 Gene

HGNC:
  • SH2D :SH2 domain containing

Suggested Antigen Peptide Sequences for SHC2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P98077

UniProtKB/Swiss-Prot:

SHC2_HUMAN :
  • P98077
Domain:
  • The PID domain mediates binding to the TrkA receptor
  • Contains 1 PID domain.
  • Contains 1 SH2 domain.
genes like me logo Genes that share domains with SHC2: view

Function for SHC2 Gene

Molecular function for SHC2 Gene

UniProtKB/Swiss-Prot Function: Signaling adapter that couples activated growth factor receptors to signaling pathway in neurons. Involved in the signal transduction pathways of neurotrophin-activated Trk receptors in cortical neurons (By similarity).

Gene Ontology (GO) - Molecular Function for SHC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16273093
GO:0019901 protein kinase binding IBA --
GO:0030971 receptor tyrosine kinase binding IBA --
genes like me logo Genes that share ontologies with SHC2: view

Phenotypes for SHC2 Gene

MGI mutant phenotypes for SHC2:
inferred from 1 alleles
genes like me logo Genes that share phenotypes with SHC2: view

Animal Model Products

CRISPR Products

miRNA for SHC2 Gene

miRTarBase miRNAs that target SHC2

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for SHC2 Gene

Localization for SHC2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SHC2 Gene COMPARTMENTS Subcellular localization image for SHC2 gene
Compartment Confidence
cytosol 4
nucleus 2
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for SHC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005829 cytosol TAS --
GO:0005886 plasma membrane IBA --
genes like me logo Genes that share ontologies with SHC2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for SHC2 Gene

Pathways for SHC2 Gene

genes like me logo Genes that share pathways with SHC2: view

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for SHC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000187 activation of MAPK activity IEA --
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IBA --
GO:0007265 Ras protein signal transduction TAS --
GO:0008286 insulin receptor signaling pathway TAS --
GO:0048010 vascular endothelial growth factor receptor signaling pathway TAS --
genes like me logo Genes that share ontologies with SHC2: view

Compounds for SHC2 Gene

(3) Novoseek inferred chemical compound relationships for SHC2 Gene

Compound -log(P) Hits PubMed IDs
phosphotyrosine 70.8 1
tyrosine 47.9 2
vegf 38.7 4
genes like me logo Genes that share compounds with SHC2: view

Transcripts for SHC2 Gene

Unigene Clusters for SHC2 Gene

SHC (Src homology 2 domain containing) transforming protein 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SHC2

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SHC2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SHC2 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c · 8d ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b
SP1: - - - -
SP2: - -
SP3: -
SP4: - - -
SP5: - -
SP6: -
SP7: -
SP8:

Relevant External Links for SHC2 Gene

GeneLoc Exon Structure for
SHC2
ECgene alternative splicing isoforms for
SHC2

Expression for SHC2 Gene

mRNA expression in normal human tissues for SHC2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SHC2 Gene

This gene is overexpressed in Pancreas (5.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SHC2 Gene

SOURCE GeneReport for Unigene cluster for SHC2 Gene Hs.30965

mRNA Expression by UniProt/SwissProt for SHC2 Gene

P98077-SHC2_HUMAN
Tissue specificity: Expressed in brain. Expressed at high level in the hypothalamus and at low level in the caudate nucleus.
genes like me logo Genes that share expressions with SHC2: view

In Situ Assay Products

Orthologs for SHC2 Gene

This gene was present in the common ancestor of animals.

Orthologs for SHC2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SHC2 36
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC533455 35
  • 87.11 (n)
  • 88.92 (a)
SHC2 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC611955 35
  • 87.74 (n)
  • 89.62 (a)
mouse
(Mus musculus)
Mammalia Shc2 35
  • 82.92 (n)
  • 87.32 (a)
Shc2 16
Shc2 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SHC2 36
  • 73 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Shc2 35
  • 83.39 (n)
  • 88.57 (a)
chicken
(Gallus gallus)
Aves SHC2 35
  • 73.39 (n)
  • 72.11 (a)
SHC2 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SHC2 36
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia shc2 35
  • 64.57 (n)
  • 70.61 (a)
zebrafish
(Danio rerio)
Actinopterygii shc2 35
  • 69.12 (n)
  • 72.1 (a)
shc2 36
  • 62 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Shc 36
  • 38 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea shc-1 36
  • 28 (a)
OneToMany
Species with no ortholog for SHC2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SHC2 Gene

ENSEMBL:
Gene Tree for SHC2 (if available)
TreeFam:
Gene Tree for SHC2 (if available)

Paralogs for SHC2 Gene

Paralogs for SHC2 Gene

Selected SIMAP similar genes for SHC2 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with SHC2: view

Variants for SHC2 Gene

Sequence variations from dbSNP and Humsavar for SHC2 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs8902 -- 416,664(-) CCCCA(A/G)TCCTG utr-variant-3-prime
rs13867 -- 417,014(-) GGCCC(A/C/G/T)TGGGT utr-variant-3-prime
rs15971 -- 416,834(-) CAGGA(C/T)ACATG utr-variant-3-prime
rs740871 -- 454,430(+) CAGAG(A/G)CCCCG intron-variant
rs740872 -- 455,285(-) GATGC(C/T)TTTAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SHC2 Gene

Variant ID Type Subtype PubMed ID
nsv428360 CNV Gain 18775914
dgv3498n71 CNV Loss 21882294
nsv910083 CNV Loss 21882294
dgv3499n71 CNV Loss 21882294
dgv3500n71 CNV Loss 21882294
dgv3501n71 CNV Gain 21882294
dgv3502n71 CNV Loss 21882294
dgv3503n71 CNV Loss 21882294
dgv3504n71 CNV Loss 21882294
dgv3505n71 CNV Loss 21882294
nsv910102 CNV Loss 21882294
nsv817810 CNV Loss 17921354
nsv910109 CNV Loss 21882294
nsv509712 CNV Insertion 20534489
esv2671474 CNV Deletion 23128226
nsv470101 CNV Loss 18288195
nsv910112 CNV Loss 21882294
esv2497793 CNV Deletion 19546169
esv1994729 CNV Deletion 18987734
esv26032 CNV Loss 19812545
esv3494 CNV Deletion 18987735
nsv828348 CNV Loss 20364138
esv2661854 CNV Deletion 23128226
esv5410 CNV Deletion 18987735
esv25497 CNV Gain+Loss 19812545
esv2663200 CNV Deletion 23128226
nsv2384 CNV Insertion 18451855
nsv820768 CNV Deletion 20802225
nsv433453 CNV Gain 18776910
esv1627441 CNV Deletion 17803354
nsv514895 CNV Complex 21397061
esv1499855 CNV Insertion 17803354
esv2276998 CNV Deletion 18987734
esv2659523 CNV Deletion 23128226
dgv3506n71 CNV Loss 21882294
dgv3507n71 CNV Loss 21882294
esv2323487 CNV Deletion 18987734
esv4763 CNV Deletion 18987735
esv1557758 CNV Deletion 17803354
nsv138298 CNV Loss 16902084
nsv910117 CNV Gain 21882294
nsv910119 CNV Gain 21882294
dgv3508n71 CNV Loss 21882294
dgv3509n71 CNV Loss 21882294
esv2223344 CNV Deletion 18987734
esv28823 CNV Loss 19812545
esv2669304 CNV Deletion 23128226
esv2659245 CNV Deletion 23128226
esv23197 CNV Gain 19812545
esv2676066 CNV Deletion 23128226
esv2672865 CNV Deletion 23128226

Relevant External Links for SHC2 Gene

HapMap Linkage Disequilibrium report
SHC2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SHC2 Gene

Disorders for SHC2 Gene

No disorders were found for SHC2 Gene.

No data available for UniProtKB/Swiss-Prot for SHC2 Gene

Publications for SHC2 Gene

  1. A family of Shc related proteins with conserved PTB, CH1 and SH2 regions. (PMID: 8760305) Pelicci G. … Pelicci P.-G. (Oncogene 1996) 3 4 23
  2. An alternative to SH2 domains for binding tyrosine-phosphorylated proteins. (PMID: 7527937) Kavanaugh W.M. … Williams L.T. (Science 1994) 2 3 4
  3. N-Shc and Sck, two neuronally expressed Shc adapter homologs. Their differential regional expression in the brain and roles in neurotrophin and Src signaling. (PMID: 9507002) Nakamura T. … Mori N. (J. Biol. Chem. 1998) 2 3 4
  4. The Shc-related adaptor protein, Sck, forms a complex with the vascular-endothelial-growth-factor receptor KDR in transfected cells. (PMID: 10749680) Warner A.J. … Prigent S.A. (Biochem. J. 2000) 3 23
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4

Products for SHC2 Gene

Sources for SHC2 Gene

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