SHANK2-AS3 Gene
RNA gene GIFtS: 27
GCID: GC11P070709
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SHANK2 antisense RNA 3(Previous names: chromosome 11 open reading frame 76, SHANK2 antisense RNA...)
(Previous symbol: C11orf76)
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Aliases
for SHANK2-AS3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): antisense
Quality score for this RNA gene is 3
| Aliases |
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| SHANK2 Antisense RNA 31 2 | | C11orf761 2 3 | | Chromosome 11 Open Reading Frame 761 | | SHANK2 Antisense RNA 3 (Non-Protein Coding)1 |
Export aliases for SHANK2-AS3 gene to outside databases |
Summaries
for SHANK2-AS3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for SHANK2-AS3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000011.9 NT_167190.1 NC_018922.1
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for SHANK2-AS3
Other transcription factors
Search SABiosciences Chromatin IP Primers for SHANK2-AS3
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SHANK2-AS3 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 11q13.4 Ensembl cytogenetic band: 11q13.4 HGNC cytogenetic band: 11q13.4SHANK2-AS3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P070709: view genomic region
(about GC identifiers)
Start:
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70,708,895 bp from pter |
End:
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70,711,220 bp from pter |
Size:
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2,326 bases |
Orientation:
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plus strand |
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Proteins
for SHANK2-AS3 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: SHAS3_HUMAN, Q9BTD1 (See
protein sequence)Recommended Name: Putative uncharacterized protein SHANK2-AS3 Size: 123 amino acids; 13317 Da
Caution: Product of a dubious CDS prediction
Sequence caution: Sequence=AAH04224.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Explore the universe of human proteins at neXtProt for SHANK2-AS3: NX_Q9BTD1
SHANK2-AS3 Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products:
SHANK2-AS3 Antibody Products:
Assay Products for SHANK2-AS3: |
Protein
Domains /
Families
for SHANK2-AS3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q9BTD1 |
Function
for SHANK2-AS3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SHANK2-AS3
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SHANK2-AS3
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for SHANK2-AS3 | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SHANK2-AS3 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SHANK2-AS3 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SHANK2-AS3 |
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Pathways & Interactions
for SHANK2-AS3 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SHANK2-AS3
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Drugs & Compounds
for SHANK2-AS3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for SHANK2-AS3
Search CenterWatch for drugs/clinical trials and news about SHANK2-AS3
|
Transcripts
for SHANK2-AS3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for SHANK2-AS3 gene: NM_145308.2 Unigene Cluster for SHANK2-AS3: SHANK2 antisense RNA 3 Hs.326766 [show with all ESTs]Unigene Representative Sequence: BC0042241 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000307548(uc009yso.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SHANK2-AS3
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SHANK2-AS3
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for SHANK2-AS3 | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SHANK2-AS3 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SHANK2-AS3 |
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SHANK2-AS3
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat SHANK2-AS3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SHANK2-AS3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SHANK2-AS3 |
Additional cDNA sequence: BC004224.2 NR_073536.1 1 DOTS entry: DT.91806877 5 AceView cDNA sequences: NM_145308 BC004224 BX283738 BE264934 BQ338929
GeneLoc Exon Structure
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Expression
for SHANK2-AS3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for SHANK2-AS3:none
SHANK2-AS3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
Genevestigator expression for SHANK2-AS3
SOURCE GeneReport for Unigene cluster: Hs.326766
SABiosciences Custom PCR Arrays for SHANK2-AS3
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SHANK2-AS3
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat SHANK2-AS3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SHANK2-AS3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SHANK2-AS3 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SHANK2-AS3 |
Orthologs
for SHANK2-AS3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for SHANK2-AS3 (if available)
TreeFam Gene Tree for SHANK2-AS3 (if available) |
Paralogs
for SHANK2-AS3 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for SHANK2-AS3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for SHANK2-AS3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for SHANK2-AS3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for SHANK2-AS3 gene integrated from 9 sources:
(articles sorted by number of sources associating them with SHANK2-AS3) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
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External Searches for SHANK2-AS3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing SHANK2-AS3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing SHANK2-AS3 gene
(According to HUGE)
About This Section
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Specialized Databases showing SHANK2-AS3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for SHANK2-AS3 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for SHANK2-AS3 gene:
Search GeneIP for patents involving SHANK2-AS3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for SHANK2-AS3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for SHANK2-AS3 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SHANK2-AS3 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SHANK2-AS3 | | | OriGene Protein Over-expression Lysate for SHANK2-AS3 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for SHANK2-AS3 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SHANK2-AS3 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SHANK2-AS3 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for SHANK2-AS3 | | OriGene Custom Protein Services for SHANK2-AS3 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SHANK2-AS3 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SHANK2-AS3 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SHANK2-AS3 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SHANK2-AS3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SHANK2-AS3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SHANK2-AS3 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SHANK2-AS3 |
|  |  |  | | | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SHANK2-AS3 |
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