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Aliases for SHANK2-AS3 Gene

Subcategory (RNA class) for SHANK2-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SHANK2-AS3 Gene

  • SHANK2 Antisense RNA 3 2 3 5
  • SHANK2 Antisense RNA 3 (Non-Protein Coding) 2 3
  • C11orf76 3 4
  • Chromosome 11 Open Reading Frame 76 2

External Ids for SHANK2-AS3 Gene

Previous HGNC Symbols for SHANK2-AS3 Gene

  • C11orf76

Previous GeneCards Identifiers for SHANK2-AS3 Gene

  • GC11P070709

Summaries for SHANK2-AS3 Gene

GeneCards Summary for SHANK2-AS3 Gene

SHANK2-AS3 (SHANK2 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHANK2-AS3 Gene

Genomics for SHANK2-AS3 Gene

Regulatory Elements for SHANK2-AS3 Gene

Enhancers for SHANK2-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F070825 0.5 Ensembl ENCODE 11.4 -36.2 -36224 1.4 HLF SHANK2-AS3 GC11P070760
GH11F070827 0.2 ENCODE 11.4 -35.5 -35460 0.1 SHANK2-AS3 GC11P070760
GH11F070862 0.4 ENCODE 0.8 -0.5 -490 0.0 PKNOX1 PBX2 ZIC2 SHANK2-AS3 GC11P070760
GH11F070834 0.6 ENCODE 0.3 -28.3 -28320 0.2 TEAD4 SHANK2-AS3 GC11P070760
GH11F070814 0.4 ENCODE 0.2 -47.7 -47720 0.2 CTCF ZNF687 CBX1 TEAD4 ZNF143 SMC3 ZEB2 RAD21 SHANK2-AS3 GC11P070760
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SHANK2-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for SHANK2-AS3 Gene

Chromosome:
11
Start:
70,862,790 bp from pter
End:
70,865,115 bp from pter
Size:
2,326 bases
Orientation:
Plus strand

Genomic View for SHANK2-AS3 Gene

Genes around SHANK2-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHANK2-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHANK2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHANK2-AS3 Gene

Proteins for SHANK2-AS3 Gene

  • Protein details for SHANK2-AS3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BTD1-SHAS3_HUMAN
    Recommended name:
    Putative uncharacterized protein SHANK2-AS3
    Protein Accession:
    Q9BTD1

    Protein attributes for SHANK2-AS3 Gene

    Size:
    123 amino acids
    Molecular mass:
    13317 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH04224.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for SHANK2-AS3 Gene

Post-translational modifications for SHANK2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHANK2-AS3 Gene

Domains & Families for SHANK2-AS3 Gene

Protein Domains for SHANK2-AS3 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SHANK2-AS3: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SHANK2-AS3 Gene

Function for SHANK2-AS3 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHANK2-AS3 Gene

Localization for SHANK2-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SHANK2-AS3 Gene

Pathways & Interactions for SHANK2-AS3 Gene

SuperPathways for SHANK2-AS3 Gene

No Data Available

Interacting Proteins for SHANK2-AS3 Gene

Gene Ontology (GO) - Biological Process for SHANK2-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SHANK2-AS3 Gene

Transcripts for SHANK2-AS3 Gene

mRNA/cDNA for SHANK2-AS3 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SHANK2-AS3 Gene

SHANK2 antisense RNA 3:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SHANK2-AS3 Gene

No ASD Table

Relevant External Links for SHANK2-AS3 Gene

GeneLoc Exon Structure for
SHANK2-AS3
ECgene alternative splicing isoforms for
SHANK2-AS3

Expression for SHANK2-AS3 Gene

mRNA expression in normal human tissues for SHANK2-AS3 Gene

SOURCE GeneReport for Unigene cluster for SHANK2-AS3 Gene:

Hs.326766
genes like me logo Genes that share expression patterns with SHANK2-AS3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SHANK2-AS3 Gene

Orthologs for SHANK2-AS3 Gene

Evolution for SHANK2-AS3 Gene

ENSEMBL:
Gene Tree for SHANK2-AS3 (if available)
TreeFam:
Gene Tree for SHANK2-AS3 (if available)

No data available for Orthologs for SHANK2-AS3 Gene

Paralogs for SHANK2-AS3 Gene

No data available for Paralogs for SHANK2-AS3 Gene

Variants for SHANK2-AS3 Gene

Sequence variations from dbSNP and Humsavar for SHANK2-AS3 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs111278871 -- 70,865,237(+) GTCAG(A/G)CCTGC intron-variant
rs111743909 -- 70,861,135(+) CAGGC(A/C)CAGGT intron-variant, upstream-variant-2KB
rs111963565 -- 70,863,475(+) GACAC(A/G)GATTC intron-variant, nc-transcript-variant
rs112701503 -- 70,864,579(+) TCTAT(C/T)CTTGT intron-variant, nc-transcript-variant
rs113305784 -- 70,863,944(+) AGAAT(A/G)TTTCT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SHANK2-AS3 Gene

Variant ID Type Subtype PubMed ID
esv993927 CNV deletion 20482838
nsv381 CNV insertion 18451855
nsv555399 CNV loss 21841781

Relevant External Links for SHANK2-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHANK2-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SHANK2-AS3 Gene

Disorders for SHANK2-AS3 Gene

Relevant External Links for SHANK2-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SHANK2-AS3

No disorders were found for SHANK2-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHANK2-AS3 Gene

Publications for SHANK2-AS3 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for SHANK2-AS3 Gene

Sources for SHANK2-AS3 Gene

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