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Aliases for SHANK2-AS1 Gene

Subcategory (RNA class) for SHANK2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SHANK2-AS1 Gene

  • SHANK2 Antisense RNA 1 2 3 5
  • SHANK2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SHANK2-AS1 Gene

Previous GeneCards Identifiers for SHANK2-AS1 Gene

  • GC00U933960
  • GC11P070478

Summaries for SHANK2-AS1 Gene

GeneCards Summary for SHANK2-AS1 Gene

SHANK2-AS1 (SHANK2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SHANK2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHANK2-AS1 Gene

Genomics for SHANK2-AS1 Gene

Regulatory Elements for SHANK2-AS1 Gene

Enhancers for SHANK2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H070625 0.5 FANTOM5 0.7 -5.0 -4991 0 MXI1 RFX1 SHANK2-AS2 SHANK2 GC11P070622 SHANK2-AS1
GH11H070638 0.8 ENCODE 0.4 +7.3 7337 0 ELF3 SOX13 TFAP4 FOXA2 SAP130 MLX RAD21 RARA NR2F6 SOX5 SHANK2-AS1 SHANK2-AS2
GH11H070628 0.4 ENCODE 0.7 -2.0 -1984 0 KLF1 ZNF341 SHANK2 SHANK2-AS1 GC11P070622
GH11H070641 0.4 ENCODE 0.4 +10.5 10497 0 RCOR1 SHANK2-AS2 SHANK2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SHANK2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SHANK2-AS1 Gene

Chromosome:
11
Start:
70,631,094 bp from pter
End:
70,635,490 bp from pter
Size:
4,397 bases
Orientation:
Plus strand

Genomic View for SHANK2-AS1 Gene

Genes around SHANK2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHANK2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHANK2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHANK2-AS1 Gene

Proteins for SHANK2-AS1 Gene

Post-translational modifications for SHANK2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHANK2-AS1 Gene

Domains & Families for SHANK2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SHANK2-AS1 Gene

Function for SHANK2-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SHANK2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHANK2-AS1 Gene

Localization for SHANK2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SHANK2-AS1 Gene

Pathways & Interactions for SHANK2-AS1 Gene

SuperPathways for SHANK2-AS1 Gene

No Data Available

Interacting Proteins for SHANK2-AS1 Gene

Gene Ontology (GO) - Biological Process for SHANK2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SHANK2-AS1 Gene

Drugs & Compounds for SHANK2-AS1 Gene

No Compound Related Data Available

Transcripts for SHANK2-AS1 Gene

mRNA/cDNA for SHANK2-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SHANK2-AS1 Gene

SHANK2 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SHANK2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SHANK2-AS1 Gene

No ASD Table

Relevant External Links for SHANK2-AS1 Gene

GeneLoc Exon Structure for
SHANK2-AS1
ECgene alternative splicing isoforms for
SHANK2-AS1

Expression for SHANK2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SHANK2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SHANK2-AS1 Gene

This gene is overexpressed in Testis (x21.4), Brain - Cortex (x4.8), Brain - Frontal Cortex (BA9) (x4.3), and Pituitary (x4.2).

SOURCE GeneReport for Unigene cluster for SHANK2-AS1 Gene:

Hs.656610
genes like me logo Genes that share expression patterns with SHANK2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHANK2-AS1 Gene

Orthologs for SHANK2-AS1 Gene

Evolution for SHANK2-AS1 Gene

ENSEMBL:
Gene Tree for SHANK2-AS1 (if available)
TreeFam:
Gene Tree for SHANK2-AS1 (if available)

No data available for Orthologs for SHANK2-AS1 Gene

Paralogs for SHANK2-AS1 Gene

No data available for Paralogs for SHANK2-AS1 Gene

Variants for SHANK2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SHANK2-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000541566 -- 70,630,923(+) CCTGC(A/G)CATCC intron-variant, upstream-variant-2KB
rs1000660633 -- 70,635,131(+) CTGTG(A/G)AACAT intron-variant, nc-transcript-variant
rs1000930255 -- 70,631,133(+) ACCGC(A/G)AAACG intron-variant, nc-transcript-variant
rs1001267199 -- 70,633,860(+) CCCAA(C/T)ATTAA intron-variant, nc-transcript-variant
rs1003366364 -- 70,632,515(+) TCAAC(C/T)AGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SHANK2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv818850 CNV loss 17921354

Relevant External Links for SHANK2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHANK2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SHANK2-AS1 Gene

Disorders for SHANK2-AS1 Gene

Relevant External Links for SHANK2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SHANK2-AS1

No disorders were found for SHANK2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHANK2-AS1 Gene

Publications for SHANK2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for SHANK2-AS1 Gene

Sources for SHANK2-AS1 Gene

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