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Aliases for SH3TC1 Gene

Aliases for SH3TC1 Gene

  • SH3 Domain And Tetratricopeptide Repeats 1 2 3

External Ids for SH3TC1 Gene

Previous GeneCards Identifiers for SH3TC1 Gene

  • GC04P008393
  • GC04P008319
  • GC04P008251
  • GC04P008201
  • GC04P008120

Summaries for SH3TC1 Gene

GeneCards Summary for SH3TC1 Gene

SH3TC1 (SH3 Domain And Tetratricopeptide Repeats 1) is a Protein Coding gene. An important paralog of this gene is SH3TC2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3TC1 Gene

Genomics for SH3TC1 Gene

Regulatory Elements for SH3TC1 Gene

Genomic Location for SH3TC1 Gene

Start:
8,182,072 bp from pter
End:
8,241,803 bp from pter
Size:
59,732 bases
Orientation:
Plus strand

Genomic View for SH3TC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SH3TC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3TC1 Gene

Proteins for SH3TC1 Gene

  • Protein details for SH3TC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TE82-S3TC1_HUMAN
    Recommended name:
    SH3 domain and tetratricopeptide repeat-containing protein 1
    Protein Accession:
    Q8TE82
    Secondary Accessions:
    • Q4W5G5

    Protein attributes for SH3TC1 Gene

    Size:
    1336 amino acids
    Molecular mass:
    146961 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SH3TC1 Gene

Proteomics data for SH3TC1 Gene at MOPED

Post-translational modifications for SH3TC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SH3TC1 Gene

Domains for SH3TC1 Gene

Gene Families for SH3TC1 Gene

HGNC:
  • TTC :Tetratricopeptide (TTC) repeat domain containing

Protein Domains for SH3TC1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TE82

UniProtKB/Swiss-Prot:

S3TC1_HUMAN :
  • Q8TE82
Domain:
  • Contains 1 SH3 domain.
Similarity:
  • Contains 9 TPR repeats.
genes like me logo Genes that share domains with SH3TC1: view

Function for SH3TC1 Gene

Gene Ontology (GO) - Molecular Function for SH3TC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SH3TC1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SH3TC1 Gene

Localization for SH3TC1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SH3TC1 Gene COMPARTMENTS Subcellular localization image for SH3TC1 gene
Compartment Confidence
cytosol 2
nucleus 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for SH3TC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with SH3TC1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for SH3TC1 Gene

Pathways for SH3TC1 Gene

SuperPathways for SH3TC1 Gene

No Data Available

Interacting Proteins for SH3TC1 Gene

Gene Ontology (GO) - Biological Process for SH3TC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with SH3TC1: view

No data available for Pathways by source for SH3TC1 Gene

Transcripts for SH3TC1 Gene

Unigene Clusters for SH3TC1 Gene

SH3 domain and tetratricopeptide repeats 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SH3TC1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SH3TC1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SH3TC1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c · 13d ^ 14a · 14b ^ 15 ^ 16a ·
SP1: - - - - - - - -
SP2: - - - - - - -
SP3: - - - - - - -
SP4:
SP5: - - -
SP6: -
SP7: - - -
SP8: - - - - - -
SP9:
SP10:
SP11: - -
SP12:
SP13:
SP14:
SP15:
SP16: -
SP17: - -
SP18:
SP19:
SP20:
SP21:
SP22: -

ExUns: 16b ^ 17a · 17b · 17c · 17d ^ 18 ^ 19a · 19b · 19c ^ 20 ^ 21a · 21b ^ 22 ^ 23 ^ 24a · 24b · 24c ^ 25a · 25b ^ 26a · 26b · 26c ^ 27a · 27b ^ 28 ^ 29a ·
SP1: - - - - - - - - - - - - -
SP2: - - - - - - - - - - - - -
SP3: - - - - - - - -
SP4: - - - -
SP5:
SP6:
SP7:
SP8:
SP9: - - - - - - - - -
SP10: - - - - -
SP11:
SP12: - - - - - - -
SP13: - - - - - -
SP14: - - - - - -
SP15: - - - - -
SP16: -
SP17:
SP18: - - - - - -
SP19: - - -
SP20:
SP21: -
SP22:

Relevant External Links for SH3TC1 Gene

GeneLoc Exon Structure for
SH3TC1
ECgene alternative splicing isoforms for
SH3TC1

Expression for SH3TC1 Gene

mRNA expression in normal human tissues for SH3TC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SH3TC1 Gene

This gene is overexpressed in Whole Blood (5.2) and Kidney - Cortex (4.8).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for SH3TC1 Gene

SOURCE GeneReport for Unigene cluster for SH3TC1 Gene Hs.479116

genes like me logo Genes that share expressions with SH3TC1: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SH3TC1 Gene

Orthologs for SH3TC1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SH3TC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SH3TC1 35
  • 98.04 (n)
  • 98.25 (a)
SH3TC1 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SH3TC1 35
  • 80.36 (n)
  • 73.36 (a)
SH3TC1 36
  • 72 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SH3TC1 35
  • 82.41 (n)
  • 78.11 (a)
SH3TC1 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sh3tc1 35
  • 78.07 (n)
  • 74.31 (a)
Sh3tc1 16
Sh3tc1 36
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SH3TC1 36
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SH3TC1 36
  • 49 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sh3tc1 35
  • 77.68 (n)
  • 74.39 (a)
chicken
(Gallus gallus)
Aves SH3TC1 35
  • 57.44 (n)
  • 55.35 (a)
SH3TC1 36
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SH3TC1 36
  • 48 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sh3tc1 35
  • 56.38 (n)
  • 52.84 (a)
zebrafish
(Danio rerio)
Actinopterygii CR382383.3 36
  • 26 (a)
OneToMany
sh3tc1 35
  • 52.53 (n)
  • 43.99 (a)
SH3TC1 (1 of 2) 36
  • 48 (a)
OneToMany
Species with no ortholog for SH3TC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SH3TC1 Gene

ENSEMBL:
Gene Tree for SH3TC1 (if available)
TreeFam:
Gene Tree for SH3TC1 (if available)

Paralogs for SH3TC1 Gene

Paralogs for SH3TC1 Gene

genes like me logo Genes that share paralogs with SH3TC1: view

Variants for SH3TC1 Gene

Sequence variations from dbSNP and Humsavar for SH3TC1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs8153 -- 8,241,013(+) CTCCT(C/G)GTGTC utr-variant-3-prime, nc-transcript-variant
rs11603 -- 8,236,424(-) CCCAG(A/G)GTGAT reference, synonymous-codon, downstream-variant-500B, nc-transcript-variant
rs753958 -- 8,200,103(-) AAAAG(G/T)TCGGA intron-variant
rs753959 -- 8,200,078(-) AGACA(G/T)GGCAG intron-variant
rs875884 -- 8,223,580(-) GCACG(A/G)CCTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SH3TC1 Gene

Variant ID Type Subtype PubMed ID
esv34196 OTHER Inversion 12058347
nsv878591 CNV Loss 21882294
nsv878593 CNV Loss 21882294
nsv461216 CNV Loss 19166990
dgv5454n71 CNV Loss 21882294
dgv5455n71 CNV Loss 21882294
nsv470012 CNV Loss 18288195
dgv5456n71 CNV Loss 21882294
nsv829853 CNV Gain+Loss 17160897
dgv5457n71 CNV Loss 21882294
esv2658523 CNV Deletion 23128226
nsv4220 CNV Insertion 18451855
dgv862e201 CNV Deletion 23290073
dgv863e201 CNV Deletion 23290073

Relevant External Links for SH3TC1 Gene

HapMap Linkage Disequilibrium report
SH3TC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SH3TC1 Gene

Disorders for SH3TC1 Gene

Relevant External Links for SH3TC1

Genetic Association Database (GAD)
SH3TC1
Human Genome Epidemiology (HuGE) Navigator
SH3TC1
genes like me logo Genes that share disorders with SH3TC1: view

No data available for UniProtKB/Swiss-Prot for SH3TC1 Gene

Publications for SH3TC1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 3 48
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
  5. The consensus coding sequences of human breast and colorectal cancers. (PMID: 16959974) Sjoeblom T. … Velculescu V.E. (Science 2006) 4

Products for SH3TC1 Gene

Sources for SH3TC1 Gene

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