Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SH3RF3-AS1 Gene

Subcategory (RNA class) for SH3RF3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SH3RF3-AS1 Gene

  • SH3RF3 Antisense RNA 1 2 3 5
  • SH3RF3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SH3RF3-AS1 Gene

ORGUL Members for SH3RF3-AS1 Gene

Previous GeneCards Identifiers for SH3RF3-AS1 Gene

  • GC02M109745

Summaries for SH3RF3-AS1 Gene

GeneCards Summary for SH3RF3-AS1 Gene

SH3RF3-AS1 (SH3RF3 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SH3RF3-AS1 Gene

Genomics for SH3RF3-AS1 Gene

Regulatory Elements for SH3RF3-AS1 Gene

Enhancers for SH3RF3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F109170 1.4 FANTOM5 Ensembl ENCODE 20 -43.0 -42978 5.1 CTCF TAL1 FEZF1 GATA2 FOS ZSCAN29 ZNF600 MAFK NFE2L2 BHLHE40 SH3RF3-AS1 SH3RF3 PIR41817 GC02M109159
GH02F109163 1 Ensembl ENCODE 18.8 -35.0 -35005 4.2 CTCF JUN FEZF1 EBF1 ZIC2 ZNF121 E2F1 PRDM10 NFE2 FOS SH3RF3-AS1 SH3RF3 GC02M109159 PIR41817
GH02F109184 0.8 Ensembl ENCODE 20.7 -55.6 -55622 2.9 KLF1 JUND BHLHE40 KDM1A FOS MNT NFE2L2 SH3RF3-AS1 SH3RF3 GC02P109192 PIR41817
GH02F109208 1.7 FANTOM5 Ensembl ENCODE 7 -83.6 -83649 10.9 HDGF PKNOX1 WRNIP1 FEZF1 ZNF2 YY1 ZNF207 FOS ZNF263 SP3 BMS1P19 ENSG00000230603 RPL10P5 SH3RF3 SH3RF3-AS1 GCC2 RANBP2 PIR32448 GC02P109192
GH02F109235 1.5 FANTOM5 Ensembl ENCODE 6.7 -110.1 -110082 10.4 HDGF WRNIP1 GLIS2 SCRT2 RCOR1 ETV6 FOS EGR2 ZNF263 CEBPB SH3RF3 SH3RF3-AS1 PIR32448 SNRPGP9
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SH3RF3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SH3RF3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000596182 419 3801 ZNF48 ZNF2 GLIS2 ZNF143 ZNF263 REST MIER3 ZNF610 SMARCA4 ZNF585B

Genomic Location for SH3RF3-AS1 Gene

Chromosome:
2
Start:
109,127,327 bp from pter
End:
109,130,119 bp from pter
Size:
2,793 bases
Orientation:
Minus strand

Genomic View for SH3RF3-AS1 Gene

Genes around SH3RF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SH3RF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SH3RF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SH3RF3-AS1 Gene

Proteins for SH3RF3-AS1 Gene

Post-translational modifications for SH3RF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SH3RF3-AS1 Gene

Domains & Families for SH3RF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SH3RF3-AS1 Gene

Function for SH3RF3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SH3RF3-AS1 Gene

Localization for SH3RF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SH3RF3-AS1 Gene

Pathways & Interactions for SH3RF3-AS1 Gene

SuperPathways for SH3RF3-AS1 Gene

No Data Available

Interacting Proteins for SH3RF3-AS1 Gene

Gene Ontology (GO) - Biological Process for SH3RF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SH3RF3-AS1 Gene

Transcripts for SH3RF3-AS1 Gene

mRNA/cDNA for SH3RF3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SH3RF3-AS1 Gene

No ASD Table

Relevant External Links for SH3RF3-AS1 Gene

GeneLoc Exon Structure for
SH3RF3-AS1
ECgene alternative splicing isoforms for
SH3RF3-AS1

Expression for SH3RF3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SH3RF3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SH3RF3-AS1 Gene

This gene is overexpressed in Artery - Aorta (x4.3) and Artery - Tibial (x4.2).
genes like me logo Genes that share expression patterns with SH3RF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SH3RF3-AS1 Gene

Orthologs for SH3RF3-AS1 Gene

Evolution for SH3RF3-AS1 Gene

ENSEMBL:
Gene Tree for SH3RF3-AS1 (if available)
TreeFam:
Gene Tree for SH3RF3-AS1 (if available)

No data available for Orthologs for SH3RF3-AS1 Gene

Paralogs for SH3RF3-AS1 Gene

No data available for Paralogs for SH3RF3-AS1 Gene

Variants for SH3RF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SH3RF3-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs111657252 -- 109,129,934(+) GCCCC(C/G)GCGGC intron-variant, nc-transcript-variant, reference, missense
rs114112827 -- 109,127,819(+) CTCTA(G/T)CCTGC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs115246865 -- 109,127,943(+) TAGCC(C/T)CAACA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs116528204 -- 109,130,143(+) GGCCA(C/T)GGCAC intron-variant, upstream-variant-2KB
rs11681142 -- 109,128,720(+) CAGTC(A/G)GGATA intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SH3RF3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1149522 OTHER inversion 26484159

Relevant External Links for SH3RF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SH3RF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SH3RF3-AS1 Gene

Disorders for SH3RF3-AS1 Gene

Relevant External Links for SH3RF3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SH3RF3-AS1

No disorders were found for SH3RF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SH3RF3-AS1 Gene

Publications for SH3RF3-AS1 Gene

  1. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 3 64
  2. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 3 64

Products for SH3RF3-AS1 Gene

Sources for SH3RF3-AS1 Gene

Content
Loading form....