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Aliases & Descriptions for SH3RF1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 6.3.2.- 3 | | FLJ21602 2 | | KIAA1494 1, 2, 3 | | POSH 1, 2, 3 | | RNF142 1, 2, 3 | | SH3MD2 2, 3 |
| | | Descriptions |
|---|
| Plenty of SH3s 2, 3 | | Protein POSH 3 | | RING finger protein 142 2, 3 | | SH3 domain containing ring finger 1 2 | | SH3 domain-containing RING finger protein 1 3 | | SH3 multiple domains 2 1, 2 | | SH3 multiple domains protein 2 3 | | plenty of SH3 domains 2 |
|
| | Search outside databases for aliases for SH3RF1 gene |
Summaries for SH3RF1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SH3RF1: This gene encodes a protein containing an N-terminus RING-finger, four SH3 domains, and a region implicated in binding of the Rho GTPase Rac. Via the RING-finger, the encoded protein has been shown to function as an ubiquitin-protein ligase involved in protein sorting at the trans-Golgi network. The encoded protein may also act as a scaffold for the c-Jun N-terminal kinase signaling pathway, facilitating the formation of a functional signaling module. [provided by RefSeq] UniProtKB/Swiss-Prot: SH3R1_HUMAN, Q7Z6J0Function: Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitinationGene Wiki entry for SH3RF1 |
Genomic Location for SH3RF1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SH3RF1 gene 
Entrez Gene cytogenetic band: 4q32.3-q33 Ensembl cytogenetic band: 4q33 HGNC cytogenetic band: 4q32.3SH3RF1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04M170251:
(about GC identifiers)
Start:
|
170,251,982 bp from pter |
End:
|
170,428,824 bp from pter |
Size:
|
176,843 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000004.10 NT_022792.17
| Proteins for SH3RF1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SH3R1_HUMAN, Q7Z6J0 (See
protein sequence)Recommended Name: Putative E3 ubiquitin-protein ligase SH3RF1 Size: 888 amino acids; 93129 Da
Subunit: Interacts with Rac; in a GTP-dependent manner (By similarity). Interacts with MAP3K10 and MAP3K11. Interacts with MAPK8IP; this interaction leads to the PJAC complex (POSH-JIP or SH3RF1/MAPK8IP apoptotic complex) with a 1:1 ratio. Interacts with SIAH1. Interacts with HERP1. Probably part of a signaling complex that may contain SH3RF1, MAPK8IP, DLK1, MAP2K4, MAP2K7, MAPK8, MAPK9, AKT1 and AKT2
Subcellular location: Cytoplasm, perinuclear region (By similarity). Cell projection, lamellipodium. Cytoplasm. Golgi apparatus, trans-Golgi network. Note=Colocalizes, with AKT2, in lamellipodia (By similarity). Colocalizes, with HERP1, in trans-Golgi network
Sequence caution: Sequence=AAH33203.1; Type=Frameshift; Positions=182; Sequence=AAH33203.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH53671.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the middle of the protein;
Secondary accessions: Q05BT2 Q8IW46 Q9HAM2 Q9P234Alternative splicing: 2 isoforms: Q7Z6J0-1 Q7Z6J0-3 Post-translational modifications:
Phosphorylated at Ser-304 by AKT1 and AKT2. When phosphorylated, it has reduced ability to bind Rac1
Subject to ubiquitination and proteasomal degradation (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_065921.2
ENSEMBL proteins: ENSP00000284637
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SH3RF1: Assays for SH3RF1: | Protein
Domains/ Families for SH3RF1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q7Z6J0
ProtoNet protein and cluster: Q7Z6J0 1 Blocks protein family: IPB001841 Zn-finger
UniProtKB/Swiss-Prot: SH3R1_HUMAN, Q7Z6J0Domain: The RING finger domain is responsible of ubiquitination and proteasomal degradationSimilarity: Belongs to the SH3RF familySimilarity: Contains 1 RING-type zinc fingerSimilarity: Contains 4 SH3 domains | Gene Function for SH3RF1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_020870
Applied Biosystems Silencer® siRNAs for SH3RF1
Sigma-Aldrich siRNA and siRNA Panels for SH3RF1  Sigma-Aldrich shRNA for SH3RF1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_020870                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020870                                  untagged cDNA clones in CMV expression vector (see all 4): BC053671 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_020870
UniProtKB/Swiss-Prot: SH3R1_HUMAN, Q7Z6J0Function: Acts as a scaffold protein, contributes to Rac-induced signal transduction such as JNKs (MAPK8 and MAPK9) activation and induces apoptosis. Within a signaling complex, it probably recruits protein kinases such as MAP3K10 or MAP3K11 which are in turn activated leading to the sequential activation of MAP2K4, MAP2K7 and JNKs (MAPK8 and MAPK9) (By similarity). May be involved in targeting of HIV-1 GAG and GAG-POL polyproteins to the plasma membraneFunction: Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes such as UBE2D1 or UBE2N and then transfers it to substrates. In the absence of an external substrate, it can catalyze self-ubiquitinationEnzyme Number (IUBMB): EC 6.3.2.- 4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for SH3RF1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for SH3RF1 
5/6 Interacting proteins for SH3RF1 (Q7Z6J01 ENSP000002846373) via UniProtKB, MINT, and/or STRING (see all 6
)About this table
|
Drugs & Compounds for SH3RF1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SH3RF1
|
Transcripts for SH3RF1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_020870
Sigma-Aldrich siRNA and siRNA Panels for SH3RF1  Sigma-Aldrich shRNA for SH3RF1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_020870 REFSEQ mRNAs for SH3RF1 gene: NM_020870.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_020870               OriGene GFP tagged cDNA clone in CMV expression vector: NM_020870                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020870                                  untagged cDNA clones in CMV expression vector (see all 4): BC053671  Additional cDNA sequence: AB040927.1 AK021429.1 AK025255.1 AK026726.1 BC033203.1 BC041023.1 BC053671.1 7 DOTS entries: DT.308292 DT.100748160 DT.100009539 DT.101978498 DT.75138116 DT.75195914 DT.91995916 24/106 AceView cDNA sequences (see all 106
):NM_020870 CD672041 AL601555 BG166931 N46563 BC041023 BI224417 BI223903 BM836830 BX093287 BX506138 BM722487 CN478827 AA742642 AB040927 BC033203 Z45709 BU619031 BM679006 BI962960 AK026726 AL703694 BF108450 BM827926
highest scoring ESTs for SH3RF1:AA485805 AI686957 AI871278 AK021429 BC053671 BU159796 CB045141 AA044786 AA044809 AA191323 Unigene Cluster for SH3RF1: SH3 domain containing ring finger 1 Hs.301804 [show with all ESTs]Unigene Representative Sequence: BC053671
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for SH3RF1 (see all 7
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | 11 | ^ | 12a | · | 12b | ^ | 13 | ^ | 14a | · | 14b | · | 14c | ^ | 15 | |
| SP1: | |   | - |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SH3RF1
1 Ensembl transcript including schematic representation: ENST00000284637
|
Expression for SH3RF1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SH3RF1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SH3RF1
1 / 2 / 3 8 probe-sets matching SH3RF1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTAATAATTT
SOURCE GeneReport for Unigene cluster: Hs.301804
|
Orthologs for SH3RF1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SH3RF1 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for SH3RF1
ENSEMBL Gene Tree for SH3RF1 | Paralogs for SH3RF1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SH3RF1 gene
- SH3RF22 ENSG000001729852
|
SNPs/Variants for SH3RF1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SH3RF1 (up to first 250kb)
|
Disorders & Mutations for SH3RF1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
| -- |
Medical News for SH3RF1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SH3RF1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/16 PubMed articles for SH3RF1 gene (see all 16
): |
Search for SH3RF1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SH3RF1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SH3RF1
(According to HUGE)
About This Section
| |
Specialized Databases showing SH3RF1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SH3RF1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SH3RF1:

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| | | | Search Tocris compounds for SH3RF1 |
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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